TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 32 - 174 | 2.2e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 146 - 230 | 8.4e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 174 - 246 | 4.1e-10 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 211 - 273 | 8.4e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 424 - 582 | 2.8e-16 | C-JID domain |
| WRKY | PF03106 | 681 - 740 | 1.2e-06 | WRKY DNA -binding domain |
| WRKY | PF03106 | 766 - 823 | 2e-17 | WRKY DNA -binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2552 |
| Acc16I | TGCGCA | 1 cut(s) | 1098 |
| AccB1I | GGYRCC | 1 cut(s) | 145 |
| AccII | CGCG | 3 cut(s) | 27, 1521, 2136 |
| AciI | CCGC | 4 cut(s) | 1386, 1519, 2112, 2136 |
| AcoI | YGGCCR | 2 cut(s) | 845, 2520 |
| AcsI | RAATTY | 7 cut(s) | 14, 293, 703, 712, 958, 1284, 1571 |
| AcuI | CTGAAG | 4 cut(s) | 140, 929, 1001, 2304 |
| AcyI | GRCGYC | 1 cut(s) | 146 |
| AfeI | AGCGCT | 1 cut(s) | 2417 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1237, 1238, 2090, 2297 |
| AflII | CTTAAG | 2 cut(s) | 119, 260 |
| AflIII | ACRYGT | 2 cut(s) | 1542, 2465 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2286 |
| AjnI | CCWGG | 4 cut(s) | 1273, 1404, 2037, 2335 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1270, 1302 |
| Alw21I | GWGCWC | 1 cut(s) | 680 |
| Alw26I | GTCTC | 4 cut(s) | 1042, 1143, 1203, 2273 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 636 |
| Ama87I | CYCGRG | 2 cut(s) | 344, 485 |
| Aor51HI | AGCGCT | 1 cut(s) | 2417 |
| AoxI | GGCC | 6 cut(s) | 223, 768, 845, 1617, 2145, 2520 |
| ApeKI | GCWGC | 6 cut(s) | 74, 321, 462, 995, 1827, 2391 |
| ApoI | RAATTY | 7 cut(s) | 14, 293, 703, 712, 958, 1284, 1571 |
| AseI | ATTAAT | 2 cut(s) | 39, 1581 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 429, 570, 1026 |
| AspLEI | GCGC | 6 cut(s) | 27, 29, 148, 1099, 2372, 2418 |
| AspS9I | GGNCC | 4 cut(s) | 2035, 2058, 2145, 2288 |
| AsuC2I | CCSGG | 1 cut(s) | 767 |
| AsuHPI | GGTGA | 4 cut(s) | 1808, 2323, 2553, 2562 |
| AvaI | CYCGRG | 2 cut(s) | 344, 485 |
| AvaII | GGWCC | 3 cut(s) | 2035, 2058, 2288 |
| AxyI | CCTNAGG | 1 cut(s) | 1236 |
| BaeGI | GKGCMC | 1 cut(s) | 511 |
| BalI | TGGCCA | 2 cut(s) | 847, 2522 |
| BanI | GGYRCC | 1 cut(s) | 145 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1303, 1335, 1653, 1685 |
| BbsI | GAAGAC | 4 cut(s) | 260, 614, 1311, 1668 |
| Bbv12I | GWGCWC | 1 cut(s) | 680 |
| BbvI | GCAGC | 6 cut(s) | 61, 308, 449, 1007, 1814, 2378 |
| BccI | CCATC | 9 cut(s) | 211, 421, 524, 562, 856, 1311, 1773, 2039, 2291 |
| BceAI | ACGGC | 4 cut(s) | 443, 475, 584, 1040 |
| BciT130I | CCWGG | 4 cut(s) | 1275, 1406, 2039, 2337 |
| BciVI | GTATCC | 1 cut(s) | 739 |
| BclI | TGATCA | 1 cut(s) | 2640 |
| BcnI | CCSGG | 1 cut(s) | 767 |
| BcoDI | GTCTC | 4 cut(s) | 1042, 1143, 1203, 2273 |
| BfaI | CTAG | 1 cut(s) | 2474 |
| BfmI | CTRYAG | 1 cut(s) | 993 |
| BfoI | RGCGCY | 2 cut(s) | 149, 2419 |
| BfrI | CTTAAG | 2 cut(s) | 119, 260 |
| BfuI | GTATCC | 1 cut(s) | 739 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1824 |
| BisI | GCNGC | 7 cut(s) | 75, 322, 463, 996, 1828, 2137, 2392 |
| BlpI | GCTNAGC | 1 cut(s) | 1831 |
| BlsI | GCNGC | 7 cut(s) | 76, 323, 464, 997, 1829, 2138, 2393 |
| Bme1390I | CCNGG | 5 cut(s) | 767, 1275, 1406, 2039, 2337 |
| Bme18I | GGWCC | 3 cut(s) | 2035, 2058, 2288 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2286 |
| BmeT110I | CYCGRG | 2 cut(s) | 344, 485 |
| BmgT120I | GGNCC | 4 cut(s) | 2035, 2058, 2145, 2288 |
| BmiI | GGNNCC | 4 cut(s) | 147, 1782, 1817, 2036 |
| BmrFI | CCNGG | 5 cut(s) | 767, 1275, 1406, 2039, 2337 |
| BmrI | ACTGGG | 1 cut(s) | 1019 |
| BmuI | ACTGGG | 1 cut(s) | 1019 |
| BpiI | GAAGAC | 4 cut(s) | 260, 614, 1311, 1668 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1814, 1846, 1966, 1998 |
| Bpu10I | CCTNAGC | 1 cut(s) | 380 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1831 |
| BpuEI | CTTGAG | 5 cut(s) | 256, 284, 353, 494, 1841 |
| BpuMI | CCSGG | 1 cut(s) | 767 |
| Bsa29I | ATCGAT | 1 cut(s) | 854 |
| BsaBI | GATNNNNATC | 1 cut(s) | 92 |
| BsaHI | GRCGYC | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 4 cut(s) | 1404, 1405, 1562, 2517 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1237, 1238, 2090, 2297 |
| Bse1I | ACTGG | 5 cut(s) | 754, 1014, 1529, 2060, 2573 |
| Bse21I | CCTNAGG | 1 cut(s) | 1236 |
| Bse3DI | GCAATG | 3 cut(s) | 927, 1462, 2494 |
| Bse8I | GATNNNNATC | 1 cut(s) | 92 |
| BseBI | CCWGG | 4 cut(s) | 1275, 1406, 2039, 2337 |
| BseCI | ATCGAT | 1 cut(s) | 854 |
| BseDI | CCNNGG | 4 cut(s) | 1404, 1405, 1562, 2517 |
| BseGI | GGATG | 7 cut(s) | 203, 413, 554, 928, 1299, 1756, 2047 |
| BseJI | GATNNNNATC | 1 cut(s) | 92 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1237, 1238, 2090, 2297 |
| BseMI | GCAATG | 3 cut(s) | 927, 1462, 2494 |
| BseMII | CTCAG | 7 cut(s) | 132, 690, 1043, 1250, 1605, 1797, 1845 |
| BseNI | ACTGG | 5 cut(s) | 754, 1014, 1529, 2060, 2573 |
| BsePI | GCGCGC | 1 cut(s) | 25 |
| BseRI | GAGGAG | 4 cut(s) | 1224, 1892, 1895, 2364 |
| BseSI | GKGCMC | 1 cut(s) | 511 |
| BseXI | GCAGC | 6 cut(s) | 61, 308, 449, 1007, 1814, 2378 |
| BseYI | CCCAGC | 2 cut(s) | 1332, 1682 |
| BsgI | GTGCAG | 2 cut(s) | 121, 589 |
| Bsh1236I | CGCG | 3 cut(s) | 27, 1521, 2136 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1156 |
| BshFI | GGCC | 6 cut(s) | 225, 770, 847, 1619, 2147, 2522 |
| BshNI | GGYRCC | 1 cut(s) | 145 |
| BshVI | ATCGAT | 1 cut(s) | 854 |
| BsiEI | CGRYCG | 1 cut(s) | 1156 |
| BsiHKAI | GWGCWC | 1 cut(s) | 680 |
| BsiHKCI | CYCGRG | 2 cut(s) | 344, 485 |
| BsiSI | CCGG | 2 cut(s) | 318, 767 |
| BslFI | GGGAC | 3 cut(s) | 450, 591, 2048 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1237, 1238, 2090, 2297 |
| BsmAI | GTCTC | 4 cut(s) | 1042, 1143, 1203, 2273 |
| BsmFI | GGGAC | 3 cut(s) | 450, 591, 2048 |
| BsnI | GGCC | 6 cut(s) | 225, 770, 847, 1619, 2147, 2522 |
| BsoBI | CYCGRG | 2 cut(s) | 344, 485 |
| Bsp1286I | GDGCHC | 2 cut(s) | 511, 680 |
| Bsp1407I | TGTACA | 3 cut(s) | 179, 2123, 2468 |
| Bsp143I | GATC | 8 cut(s) | 388, 451, 862, 1055, 1459, 1809, 2162, 2640 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1831 |
| Bsp19I | CCATGG | 1 cut(s) | 1562 |
| BspACI | CCGC | 4 cut(s) | 1386, 1519, 2112, 2136 |
| BspANI | GGCC | 6 cut(s) | 225, 770, 847, 1619, 2147, 2522 |
| BspCNI | CTCAG | 7 cut(s) | 133, 691, 1044, 1249, 1606, 1798, 1844 |
| BspDI | ATCGAT | 1 cut(s) | 854 |
| BspFNI | CGCG | 3 cut(s) | 27, 1521, 2136 |
| BspHI | TCATGA | 2 cut(s) | 1948, 2542 |
| BspLI | GGNNCC | 4 cut(s) | 147, 1782, 1817, 2036 |
| BspMAI | CTGCAG | 1 cut(s) | 997 |
| BspQI | GCTCTTC | 1 cut(s) | 977 |
| BspT107I | GGYRCC | 1 cut(s) | 145 |
| BspTI | CTTAAG | 2 cut(s) | 119, 260 |
| BsrDI | GCAATG | 3 cut(s) | 927, 1462, 2494 |
| BsrGI | TGTACA | 3 cut(s) | 179, 2123, 2468 |
| BsrI | ACTGG | 5 cut(s) | 754, 1014, 1529, 2060, 2573 |
| BssECI | CCNNGG | 4 cut(s) | 1404, 1405, 1562, 2517 |
| BssHII | GCGCGC | 1 cut(s) | 25 |
| BssMI | GATC | 8 cut(s) | 388, 451, 862, 1055, 1459, 1809, 2162, 2640 |
| BssNI | GRCGYC | 1 cut(s) | 146 |
| BssT1I | CCWWGG | 1 cut(s) | 1562 |
| Bst2UI | CCWGG | 4 cut(s) | 1275, 1406, 2039, 2337 |
| Bst4CI | ACNGT | 7 cut(s) | 804, 874, 1137, 1428, 1475, 1511, 1646 |
| Bst6I | CTCTTC | 3 cut(s) | 977, 1967, 2235 |
| BstACI | GRCGYC | 1 cut(s) | 146 |
| BstAFI | CTTAAG | 2 cut(s) | 119, 260 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 50 |
| BstAUI | TGTACA | 3 cut(s) | 179, 2123, 2468 |
| BstC8I | GCNNGC | 5 cut(s) | 27, 72, 989, 993, 2659 |
| BstDEI | CTNAG | 9 cut(s) | 141, 380, 699, 1018, 1052, 1236, 1614, 1806, 1831 |
| BstDSI | CCRYGG | 2 cut(s) | 1562, 2517 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2088 |
| BstF5I | GGATG | 7 cut(s) | 203, 413, 554, 928, 1299, 1756, 2047 |
| BstFNI | CGCG | 3 cut(s) | 27, 1521, 2136 |
| BstH2I | RGCGCY | 2 cut(s) | 149, 2419 |
| BstHHI | GCGC | 6 cut(s) | 27, 29, 148, 1099, 2372, 2418 |
| BstKTI | GATC | 8 cut(s) | 391, 454, 865, 1058, 1462, 1812, 2165, 2643 |
| BstMAI | GTCTC | 4 cut(s) | 1042, 1143, 1203, 2273 |
| BstMBI | GATC | 8 cut(s) | 388, 451, 862, 1055, 1459, 1809, 2162, 2640 |
| BstMCI | CGRYCG | 1 cut(s) | 1156 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 50, 1118, 1824 |
| BstNI | CCWGG | 4 cut(s) | 1275, 1406, 2039, 2337 |
| BstNSI | RCATGY | 4 cut(s) | 48, 70, 1546, 2469 |
| BstSCI | CCNGG | 5 cut(s) | 765, 1273, 1404, 2037, 2335 |
| BstSFI | CTRYAG | 1 cut(s) | 993 |
| BstSLI | GKGCMC | 1 cut(s) | 511 |
| BstUI | CGCG | 3 cut(s) | 27, 1521, 2136 |
| BstV1I | GCAGC | 6 cut(s) | 61, 308, 449, 1007, 1814, 2378 |
| BstV2I | GAAGAC | 4 cut(s) | 260, 614, 1311, 1668 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1347 |
| Bsu15I | ATCGAT | 1 cut(s) | 854 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1236 |
| BsuI | GTATCC | 1 cut(s) | 739 |
| BsuRI | GGCC | 6 cut(s) | 225, 770, 847, 1619, 2147, 2522 |
| BsuTUI | ATCGAT | 1 cut(s) | 854 |
| BtgI | CCRYGG | 2 cut(s) | 1562, 2517 |
| BtsCI | GGATG | 7 cut(s) | 203, 413, 554, 928, 1299, 1756, 2047 |
| BtsI | GCAGTG | 3 cut(s) | 393, 541, 1849 |
| BtsIMutI | CAGTG | 7 cut(s) | 138, 252, 393, 541, 1611, 1642, 1849 |
| Cac8I | GCNNGC | 5 cut(s) | 27, 72, 989, 993, 2659 |
| CaiI | CAGNNNCTG | 1 cut(s) | 636 |
| CciI | TCATGA | 2 cut(s) | 1948, 2542 |
| CfoI | GCGC | 6 cut(s) | 27, 29, 148, 1099, 2372, 2418 |
| Cfr13I | GGNCC | 4 cut(s) | 2035, 2058, 2145, 2288 |
| ClaI | ATCGAT | 1 cut(s) | 854 |
| CseI | GACGC | 1 cut(s) | 2142 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 171, 206 |
| DdeI | CTNAG | 9 cut(s) | 141, 380, 699, 1018, 1052, 1236, 1614, 1806, 1831 |
| DinI | GGCGCC | 1 cut(s) | 147 |
| DpnI | GATC | 8 cut(s) | 390, 453, 864, 1057, 1461, 1811, 2164, 2642 |
| DpnII | GATC | 8 cut(s) | 388, 451, 862, 1055, 1459, 1809, 2162, 2640 |
| DraI | TTTAAA | 1 cut(s) | 717 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2552 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2286 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2552 |
| EaeI | YGGCCR | 2 cut(s) | 845, 2520 |
| Eam1104I | CTCTTC | 3 cut(s) | 977, 1967, 2235 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2286 |
| EarI | CTCTTC | 3 cut(s) | 977, 1967, 2235 |
| Eco130I | CCWWGG | 1 cut(s) | 1562 |
| Eco147I | AGGCCT | 1 cut(s) | 225 |
| Eco32I | GATATC | 1 cut(s) | 1150 |
| Eco47I | GGWCC | 3 cut(s) | 2035, 2058, 2288 |
| Eco47III | AGCGCT | 1 cut(s) | 2417 |
| Eco57I | CTGAAG | 4 cut(s) | 140, 929, 1001, 2304 |
| Eco81I | CCTNAGG | 1 cut(s) | 1236 |
| Eco88I | CYCGRG | 2 cut(s) | 344, 485 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2088 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2035, 2288 |
| EcoRII | CCWGG | 4 cut(s) | 1273, 1404, 2037, 2335 |
| EcoRV | GATATC | 1 cut(s) | 1150 |
| EcoT14I | CCWWGG | 1 cut(s) | 1562 |
| EcoT22I | ATGCAT | 1 cut(s) | 46 |
| EgeI | GGCGCC | 1 cut(s) | 147 |
| EheI | GGCGCC | 1 cut(s) | 147 |
| ErhI | CCWWGG | 1 cut(s) | 1562 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 819, 851, 2421, 2453 |
| FaqI | GGGAC | 3 cut(s) | 450, 591, 2048 |
| FauI | CCCGC | 2 cut(s) | 1379, 2105 |
| FauNDI | CATATG | 1 cut(s) | 285 |
| FbaI | TGATCA | 1 cut(s) | 2640 |
| Fnu4HI | GCNGC | 7 cut(s) | 75, 322, 463, 996, 1828, 2137, 2392 |
| FokI | GGATG | 7 cut(s) | 190, 400, 541, 935, 1286, 1763, 2054 |
| Fsp4HI | GCNGC | 7 cut(s) | 75, 322, 463, 996, 1828, 2137, 2392 |
| FspAI | RTGCGCAY | 1 cut(s) | 1098 |
| FspBI | CTAG | 1 cut(s) | 2474 |
| FspI | TGCGCA | 1 cut(s) | 1098 |
| GlaI | GCGC | 6 cut(s) | 26, 28, 147, 1098, 2371, 2417 |
| GluI | GCNGC | 7 cut(s) | 75, 322, 463, 996, 1828, 2137, 2392 |
| GsaI | CCCAGC | 2 cut(s) | 1336, 1686 |
| HaeII | RGCGCY | 2 cut(s) | 149, 2419 |
| HaeIII | GGCC | 6 cut(s) | 225, 770, 847, 1619, 2147, 2522 |
| HapII | CCGG | 2 cut(s) | 318, 767 |
| HgaI | GACGC | 1 cut(s) | 2142 |
| HhaI | GCGC | 6 cut(s) | 27, 29, 148, 1099, 2372, 2418 |
| Hin1I | GRCGYC | 1 cut(s) | 146 |
| Hin6I | GCGC | 6 cut(s) | 25, 27, 146, 1097, 2370, 2416 |
| HinP1I | GCGC | 6 cut(s) | 25, 27, 146, 1097, 2370, 2416 |
| HincII | GTYRAC | 1 cut(s) | 2247 |
| HindII | GTYRAC | 1 cut(s) | 2247 |
| HindIII | AAGCTT | 2 cut(s) | 152, 788 |
| HinfI | GANTC | 6 cut(s) | 265, 762, 1003, 1728, 1961, 2355 |
| HpaII | CCGG | 2 cut(s) | 318, 767 |
| HphI | GGTGA | 4 cut(s) | 1808, 2323, 2553, 2562 |
| Hpy166II | GTNNAC | 4 cut(s) | 731, 2126, 2247, 2471 |
| Hpy8I | GTNNAC | 4 cut(s) | 731, 2126, 2247, 2471 |
| Hpy99I | CGWCG | 1 cut(s) | 2136 |
| HpyAV | CCTTC | 8 cut(s) | 665, 904, 1459, 1907, 2279, 2301, 2451, 2490 |
| HpyCH4III | ACNGT | 7 cut(s) | 804, 874, 1137, 1428, 1475, 1511, 1646 |
| HpyCH4IV | ACGT | 1 cut(s) | 2677 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 50, 1118, 1824 |
| HpyF3I | CTNAG | 9 cut(s) | 141, 380, 699, 1018, 1052, 1236, 1614, 1806, 1831 |
| HpySE526I | ACGT | 1 cut(s) | 2677 |
| Hsp92I | GRCGYC | 1 cut(s) | 146 |
| HspAI | GCGC | 6 cut(s) | 25, 27, 146, 1097, 2370, 2416 |
| KasI | GGCGCC | 1 cut(s) | 145 |
| Ksp22I | TGATCA | 1 cut(s) | 2640 |
| Kzo9I | GATC | 8 cut(s) | 388, 451, 862, 1055, 1459, 1809, 2162, 2640 |
| LguI | GCTCTTC | 1 cut(s) | 977 |
| LmnI | GCTCC | 7 cut(s) | 376, 517, 1815, 1882, 2339, 2377, 2423 |
| Lsp1109I | GCAGC | 6 cut(s) | 61, 308, 449, 1007, 1814, 2378 |
| MaeI | CTAG | 1 cut(s) | 2474 |
| MaeII | ACGT | 1 cut(s) | 2677 |
| MalI | GATC | 8 cut(s) | 390, 453, 864, 1057, 1461, 1811, 2164, 2642 |
| MboI | GATC | 8 cut(s) | 388, 451, 862, 1055, 1459, 1809, 2162, 2640 |
| MfeI | CAATTG | 3 cut(s) | 420, 561, 1031 |
| MhlI | GDGCHC | 2 cut(s) | 511, 680 |
| MlsI | TGGCCA | 2 cut(s) | 847, 2522 |
| MluNI | TGGCCA | 2 cut(s) | 847, 2522 |
| Mly113I | GGCGCC | 1 cut(s) | 146 |
| MlyI | GAGTC | 3 cut(s) | 274, 756, 2364 |
| MmeI | TCCRAC | 4 cut(s) | 1881, 1973, 2201, 2365 |
| Mox20I | TGGCCA | 2 cut(s) | 847, 2522 |
| Mph1103I | ATGCAT | 1 cut(s) | 46 |
| MroXI | GAANNNNTTC | 3 cut(s) | 429, 570, 1026 |
| MscI | TGGCCA | 2 cut(s) | 847, 2522 |
| MslI | CAYNNNNRTG | 2 cut(s) | 284, 1547 |
| Msp20I | TGGCCA | 2 cut(s) | 847, 2522 |
| MspA1I | CMGCKG | 2 cut(s) | 1186, 1835 |
| MspCI | CTTAAG | 2 cut(s) | 119, 260 |
| MspI | CCGG | 2 cut(s) | 318, 767 |
| MspR9I | CCNGG | 5 cut(s) | 767, 1275, 1406, 2039, 2337 |
| MunI | CAATTG | 3 cut(s) | 420, 561, 1031 |
| MvaI | CCWGG | 4 cut(s) | 1275, 1406, 2039, 2337 |
| MvnI | CGCG | 3 cut(s) | 27, 1521, 2136 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 50, 1118, 1824 |
| NarI | GGCGCC | 1 cut(s) | 146 |
| NciI | CCSGG | 1 cut(s) | 767 |
| NcoI | CCATGG | 1 cut(s) | 1562 |
| NdeI | CATATG | 1 cut(s) | 285 |
| NdeII | GATC | 8 cut(s) | 388, 451, 862, 1055, 1459, 1809, 2162, 2640 |
| NlaIV | GGNNCC | 4 cut(s) | 147, 1782, 1817, 2036 |
| NmuCI | GTSAC | 4 cut(s) | 62, 1697, 1850, 1862 |
| NsbI | TGCGCA | 1 cut(s) | 1098 |
| NsiI | ATGCAT | 1 cut(s) | 46 |
| NspI | RCATGY | 4 cut(s) | 48, 70, 1546, 2469 |
| PagI | TCATGA | 2 cut(s) | 1948, 2542 |
| PasI | CCCWGGG | 1 cut(s) | 1405 |
| PauI | GCGCGC | 1 cut(s) | 25 |
| PceI | AGGCCT | 1 cut(s) | 225 |
| PciI | ACATGT | 2 cut(s) | 1542, 2465 |
| PciSI | GCTCTTC | 1 cut(s) | 977 |
| PdmI | GAANNNNTTC | 3 cut(s) | 429, 570, 1026 |
| PfeI | GAWTC | 3 cut(s) | 1003, 1728, 1961 |
| PfoI | TCCNGGA | 1 cut(s) | 1273 |
| PkrI | GCNGC | 7 cut(s) | 76, 323, 464, 997, 1829, 2138, 2393 |
| PleI | GAGTC | 3 cut(s) | 273, 756, 2363 |
| PluTI | GGCGCC | 1 cut(s) | 149 |
| PpsI | GAGTC | 3 cut(s) | 273, 756, 2363 |
| PpuMI | RGGWCCY | 2 cut(s) | 2035, 2288 |
| PscI | ACATGT | 2 cut(s) | 1542, 2465 |
| PshBI | ATTAAT | 2 cut(s) | 39, 1581 |
| Psp5II | RGGWCCY | 2 cut(s) | 2035, 2288 |
| Psp6I | CCWGG | 4 cut(s) | 1273, 1404, 2037, 2335 |
| PspFI | CCCAGC | 2 cut(s) | 1332, 1682 |
| PspGI | CCWGG | 4 cut(s) | 1273, 1404, 2037, 2335 |
| PspN4I | GGNNCC | 4 cut(s) | 147, 1782, 1817, 2036 |
| PspPI | GGNCC | 4 cut(s) | 2035, 2058, 2145, 2288 |
| PspPPI | RGGWCCY | 2 cut(s) | 2035, 2288 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1773, 1805 |
| PstI | CTGCAG | 1 cut(s) | 997 |
| PstNI | CAGNNNCTG | 1 cut(s) | 636 |
| PteI | GCGCGC | 1 cut(s) | 25 |
| PvuII | CAGCTG | 2 cut(s) | 1186, 1835 |
| RseI | CAYNNNNRTG | 2 cut(s) | 284, 1547 |
| SapI | GCTCTTC | 1 cut(s) | 977 |
| SatI | GCNGC | 7 cut(s) | 75, 322, 463, 996, 1828, 2137, 2392 |
| Sau3AI | GATC | 8 cut(s) | 388, 451, 862, 1055, 1459, 1809, 2162, 2640 |
| Sau96I | GGNCC | 4 cut(s) | 2035, 2058, 2145, 2288 |
| SchI | GAGTC | 3 cut(s) | 274, 756, 2364 |
| ScrFI | CCNGG | 5 cut(s) | 767, 1275, 1406, 2039, 2337 |
| SduI | GDGCHC | 2 cut(s) | 511, 680 |
| SfcI | CTRYAG | 1 cut(s) | 993 |
| SfoI | GGCGCC | 1 cut(s) | 147 |
| SinI | GGWCC | 3 cut(s) | 2035, 2058, 2288 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 284, 1547 |
| SmlI | CTYRAG | 7 cut(s) | 119, 235, 260, 299, 332, 473, 1820 |
| SmoI | CTYRAG | 7 cut(s) | 119, 235, 260, 299, 332, 473, 1820 |
| SseBI | AGGCCT | 1 cut(s) | 225 |
| SsiI | CCGC | 4 cut(s) | 1386, 1519, 2112, 2136 |
| SspDI | GGCGCC | 1 cut(s) | 145 |
| SspI | AATATT | 1 cut(s) | 1498 |
| SspMI | CTAG | 1 cut(s) | 2474 |
| StuI | AGGCCT | 1 cut(s) | 225 |
| StyD4I | CCNGG | 5 cut(s) | 765, 1273, 1404, 2037, 2335 |
| StyI | CCWWGG | 1 cut(s) | 1562 |
| TaaI | ACNGT | 7 cut(s) | 804, 874, 1137, 1428, 1475, 1511, 1646 |
| TaiI | ACGT | 1 cut(s) | 2680 |
| TaqII | GACCGA | 1 cut(s) | 1142 |
| TatI | WGTACW | 5 cut(s) | 179, 869, 2123, 2410, 2468 |
| TauI | GCSGC | 1 cut(s) | 2139 |
| TfiI | GAWTC | 3 cut(s) | 1003, 1728, 1961 |
| TscAI | CASTG | 7 cut(s) | 145, 259, 400, 541, 1618, 1649, 1849 |
| TseFI | GTSAC | 4 cut(s) | 62, 1697, 1850, 1862 |
| TseI | GCWGC | 6 cut(s) | 74, 321, 462, 995, 1827, 2391 |
| Tsp45I | GTSAC | 4 cut(s) | 62, 1697, 1850, 1862 |
| TspGWI | ACGGA | 3 cut(s) | 1312, 2114, 2506 |
| TspRI | CASTG | 7 cut(s) | 145, 259, 400, 541, 1618, 1649, 1849 |
| Vha464I | CTTAAG | 2 cut(s) | 119, 260 |
| VpaK11BI | GGWCC | 3 cut(s) | 2035, 2058, 2288 |
| VspI | ATTAAT | 2 cut(s) | 39, 1581 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2088 |
| XapI | RAATTY | 7 cut(s) | 14, 293, 703, 712, 958, 1284, 1571 |
| XceI | RCATGY | 4 cut(s) | 48, 70, 1546, 2469 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1006, 1772 |
| XmnI | GAANNNNTTC | 3 cut(s) | 429, 570, 1026 |
| XspI | CTAG | 1 cut(s) | 2474 |
| Zsp2I | ATGCAT | 1 cut(s) | 46 |