TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 14 - 183 | 1.8e-52 | TIR domain |
| TIR_2 | PF13676 | 15 - 127 | 7.6e-16 | TIR domain |
| NB-ARC | PF00931 | 194 - 358 | 3.1e-15 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 428 - 496 | 1e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 764 - 847 | 8.6e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 1042 - 1194 | 4.6e-17 | C-JID domain |
| WRKY | PF03106 | 1383 - 1440 | 1.4e-17 | WRKY DNA -binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3270 |
| AarI | CACCTGC | 1 cut(s) | 591 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4403 |
| Acc36I | ACCTGC | 1 cut(s) | 591 |
| AccB1I | GGYRCC | 1 cut(s) | 1999 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3040 |
| AccBSI | CCGCTC | 2 cut(s) | 119, 1729 |
| AccI | GTMKAC | 2 cut(s) | 129, 4321 |
| AccII | CGCG | 4 cut(s) | 233, 387, 1134, 3239 |
| AccIII | TCCGGA | 2 cut(s) | 1482, 2479 |
| AciI | CCGC | 8 cut(s) | 119, 429, 651, 1134, 1729, 3188, 3239, 3558 |
| AclI | AACGTT | 2 cut(s) | 1114, 3820 |
| AcoI | YGGCCR | 4 cut(s) | 1721, 1913, 2699, 4371 |
| AcuI | CTGAAG | 3 cut(s) | 1635, 1994, 2783 |
| AcyI | GRCGYC | 2 cut(s) | 912, 2000 |
| AdeI | CACNNNGTG | 2 cut(s) | 246, 1249 |
| AfeI | AGCGCT | 1 cut(s) | 4558 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 397, 675, 1671, 1730, 3040, 3092, 3926, 4148 |
| AflII | CTTAAG | 2 cut(s) | 1973, 2114 |
| AflIII | ACRYGT | 3 cut(s) | 1603, 3390, 4316 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 1786, 2621, 4137 |
| AjnI | CCWGG | 8 cut(s) | 270, 674, 1862, 3127, 3991, 4120, 4186, 4454 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 922, 954, 1737, 1769 |
| Alw21I | GWGCWC | 3 cut(s) | 1168, 2108, 3665 |
| Alw26I | GTCTC | 5 cut(s) | 1794, 2056, 2629, 2997, 4124 |
| Alw44I | GTGCAC | 1 cut(s) | 2104 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2490 |
| Ama87I | CYCGRG | 6 cut(s) | 72, 1439, 2198, 3520, 4005, 4629 |
| Aor13HI | TCCGGA | 2 cut(s) | 1482, 2479 |
| Aor51HI | AGCGCT | 1 cut(s) | 4558 |
| ApaI | GGGCCC | 2 cut(s) | 1692, 4006 |
| ApaLI | GTGCAC | 1 cut(s) | 2104 |
| ApeKI | GCWGC | 7 cut(s) | 101, 459, 1928, 2175, 2457, 2849, 4242 |
| AseI | ATTAAT | 1 cut(s) | 3429 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1350, 1524, 2424 |
| AspA2I | CCTAGG | 1 cut(s) | 4579 |
| AspLEI | GCGC | 7 cut(s) | 613, 2002, 2953, 3015, 3239, 4223, 4559 |
| AsuC2I | CCSGG | 1 cut(s) | 2621 |
| AsuHPI | GGTGA | 5 cut(s) | 274, 541, 773, 4174, 4404 |
| AvaI | CYCGRG | 6 cut(s) | 72, 1439, 2198, 3520, 4005, 4629 |
| AvaII | GGWCC | 5 cut(s) | 4, 1780, 3917, 4575, 4626 |
| AvrII | CCTAGG | 1 cut(s) | 4579 |
| AxyI | CCTNAGG | 1 cut(s) | 3090 |
| BaeGI | GKGCMC | 3 cut(s) | 1692, 2108, 4006 |
| BalI | TGGCCA | 3 cut(s) | 1915, 2701, 4373 |
| BanI | GGYRCC | 1 cut(s) | 1999 |
| BanII | GRGCYC | 5 cut(s) | 1168, 1440, 1692, 3255, 4006 |
| BbsI | GAAGAC | 4 cut(s) | 37, 2114, 2468, 4315 |
| Bbv12I | GWGCWC | 3 cut(s) | 1168, 2108, 3665 |
| BbvI | GCAGC | 7 cut(s) | 113, 446, 1915, 2162, 2444, 2861, 4229 |
| BceAI | ACGGC | 5 cut(s) | 128, 1831, 2297, 2438, 2445 |
| BciT130I | CCWGG | 8 cut(s) | 272, 676, 1864, 3129, 3993, 4122, 4188, 4456 |
| BciVI | GTATCC | 1 cut(s) | 1525 |
| BcnI | CCSGG | 1 cut(s) | 2621 |
| BcoDI | GTCTC | 5 cut(s) | 1794, 2056, 2629, 2997, 4124 |
| BfaI | CTAG | 5 cut(s) | 975, 1274, 1301, 4325, 4580 |
| BfmI | CTRYAG | 2 cut(s) | 1457, 2847 |
| BfoI | RGCGCY | 3 cut(s) | 2003, 3016, 4560 |
| BfrI | CTTAAG | 2 cut(s) | 1973, 2114 |
| BfuAI | ACCTGC | 1 cut(s) | 591 |
| BfuI | GTATCC | 1 cut(s) | 1525 |
| BisI | GCNGC | 8 cut(s) | 102, 460, 652, 1929, 2176, 2458, 2850, 4243 |
| BlnI | CCTAGG | 1 cut(s) | 4579 |
| BlsI | GCNGC | 8 cut(s) | 103, 461, 653, 1930, 2177, 2459, 2851, 4244 |
| BmcAI | AGTACT | 1 cut(s) | 990 |
| Bme1390I | CCNGG | 9 cut(s) | 272, 676, 1864, 2621, 3129, 3993, 4122, 4188, 4456 |
| Bme18I | GGWCC | 5 cut(s) | 4, 1780, 3917, 4575, 4626 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 1786, 2621, 4137 |
| BmeT110I | CYCGRG | 6 cut(s) | 72, 1439, 2198, 3520, 4005, 4629 |
| BmrFI | CCNGG | 9 cut(s) | 272, 676, 1864, 2621, 3129, 3993, 4122, 4188, 4456 |
| BmrI | ACTGGG | 2 cut(s) | 2873, 3407 |
| BmuI | ACTGGG | 2 cut(s) | 2873, 3407 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1887 |
| BpiI | GAAGAC | 4 cut(s) | 37, 2114, 2468, 4315 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1740, 1772 |
| BpmI | CTGGAG | 1 cut(s) | 442 |
| BpuEI | CTTGAG | 4 cut(s) | 2110, 2138, 2207, 2348 |
| BpuMI | CCSGG | 1 cut(s) | 2621 |
| Bsa29I | ATCGAT | 1 cut(s) | 3006 |
| BsaAI | YACGTR | 3 cut(s) | 857, 1238, 2447 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1946, 3006, 4653 |
| BsaHI | GRCGYC | 2 cut(s) | 912, 2000 |
| BsaI | GGTCTC | 1 cut(s) | 2629 |
| BsaWI | WCCGGW | 2 cut(s) | 1482, 2479 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2363, 2393, 3426, 3456, 4335, 4365, 4434, 4464 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 397, 675, 1671, 1730, 3040, 3092, 3926, 4148 |
| Bse118I | RCCGGY | 1 cut(s) | 4463 |
| Bse1I | ACTGG | 5 cut(s) | 264, 2608, 2868, 3402, 4438 |
| Bse21I | CCTNAGG | 1 cut(s) | 3090 |
| Bse3DI | GCAATG | 9 cut(s) | 186, 576, 669, 1205, 2459, 2665, 2781, 3313, 4345 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1946, 3006, 4653 |
| BseAI | TCCGGA | 2 cut(s) | 1482, 2479 |
| BseBI | CCWGG | 8 cut(s) | 272, 676, 1864, 3129, 3993, 4122, 4188, 4456 |
| BseCI | ATCGAT | 1 cut(s) | 3006 |
| BseJI | GATNNNNATC | 3 cut(s) | 1946, 3006, 4653 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 397, 675, 1671, 1730, 3040, 3092, 3926, 4148 |
| BseMI | GCAATG | 9 cut(s) | 186, 576, 669, 1205, 2459, 2665, 2781, 3313, 4345 |
| BseNI | ACTGG | 5 cut(s) | 264, 2608, 2868, 3402, 4438 |
| BseRI | GAGGAG | 6 cut(s) | 3075, 3078, 3518, 3725, 3728, 4215 |
| BseSI | GKGCMC | 3 cut(s) | 1692, 2108, 4006 |
| BseXI | GCAGC | 7 cut(s) | 113, 446, 1915, 2162, 2444, 2861, 4229 |
| BseYI | CCCAGC | 1 cut(s) | 3909 |
| BsgI | GTGCAG | 2 cut(s) | 434, 1975 |
| Bsh1236I | CGCG | 4 cut(s) | 233, 387, 1134, 3239 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3010 |
| BshNI | GGYRCC | 1 cut(s) | 1999 |
| BshVI | ATCGAT | 1 cut(s) | 3006 |
| BsiEI | CGRYCG | 1 cut(s) | 3010 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1168, 2108, 3665 |
| BsiHKCI | CYCGRG | 6 cut(s) | 72, 1439, 2198, 3520, 4005, 4629 |
| BsiSI | CCGG | 7 cut(s) | 1483, 1587, 1724, 2172, 2480, 2621, 4464 |
| BslFI | GGGAC | 7 cut(s) | 609, 1746, 1793, 3170, 3184, 3926, 4597 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 397, 675, 1671, 1730, 3040, 3092, 3926, 4148 |
| BsmAI | GTCTC | 5 cut(s) | 1794, 2056, 2629, 2997, 4124 |
| BsmFI | GGGAC | 7 cut(s) | 609, 1746, 1793, 3170, 3184, 3926, 4597 |
| BsmI | GAATGC | 3 cut(s) | 281, 1332, 3512 |
| Bso31I | GGTCTC | 1 cut(s) | 2629 |
| BsoBI | CYCGRG | 6 cut(s) | 72, 1439, 2198, 3520, 4005, 4629 |
| Bsp120I | GGGCCC | 2 cut(s) | 1688, 4002 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1168, 1440, 1692, 2108, 3255, 3665, 4006 |
| Bsp13I | TCCGGA | 2 cut(s) | 1482, 2479 |
| Bsp1407I | TGTACA | 2 cut(s) | 2033, 3980 |
| Bsp19I | CCATGG | 2 cut(s) | 3410, 4368 |
| BspACI | CCGC | 8 cut(s) | 119, 429, 651, 1134, 1729, 3188, 3239, 3558 |
| BspDI | ATCGAT | 1 cut(s) | 3006 |
| BspEI | TCCGGA | 2 cut(s) | 1482, 2479 |
| BspFNI | CGCG | 4 cut(s) | 233, 387, 1134, 3239 |
| BspHI | TCATGA | 1 cut(s) | 747 |
| BspMAI | CTGCAG | 1 cut(s) | 2851 |
| BspMI | ACCTGC | 1 cut(s) | 591 |
| BspQI | GCTCTTC | 1 cut(s) | 4547 |
| BspT107I | GGYRCC | 1 cut(s) | 1999 |
| BspTI | CTTAAG | 2 cut(s) | 1973, 2114 |
| BspTNI | GGTCTC | 1 cut(s) | 2629 |
| BsrBI | CCGCTC | 2 cut(s) | 119, 1729 |
| BsrDI | GCAATG | 9 cut(s) | 186, 576, 669, 1205, 2459, 2665, 2781, 3313, 4345 |
| BsrFI | RCCGGY | 1 cut(s) | 4463 |
| BsrGI | TGTACA | 2 cut(s) | 2033, 3980 |
| BsrI | ACTGG | 5 cut(s) | 264, 2608, 2868, 3402, 4438 |
| BssAI | RCCGGY | 1 cut(s) | 4463 |
| BssNAI | GTATAC | 1 cut(s) | 4322 |
| BssNI | GRCGYC | 2 cut(s) | 912, 2000 |
| BssT1I | CCWWGG | 9 cut(s) | 900, 1496, 1744, 1923, 3410, 3883, 3937, 4368, 4579 |
| Bst1107I | GTATAC | 1 cut(s) | 4322 |
| Bst2UI | CCWGG | 8 cut(s) | 272, 676, 1864, 3129, 3993, 4122, 4188, 4456 |
| Bst4CI | ACNGT | 9 cut(s) | 716, 1361, 1739, 2030, 2486, 2728, 2991, 3184, 3326 |
| Bst6I | CTCTTC | 9 cut(s) | 22, 1058, 1086, 3129, 3797, 4092, 4547, 4565, 4586 |
| BstACI | GRCGYC | 2 cut(s) | 912, 2000 |
| BstAFI | CTTAAG | 2 cut(s) | 1973, 2114 |
| BstAUI | TGTACA | 2 cut(s) | 2033, 3980 |
| BstBAI | YACGTR | 3 cut(s) | 857, 1238, 2447 |
| BstC8I | GCNNGC | 7 cut(s) | 117, 1132, 1378, 2843, 2847, 4465, 4510 |
| BstDSI | CCRYGG | 2 cut(s) | 3410, 4368 |
| BstEII | GGTNACC | 2 cut(s) | 1739, 1826 |
| BstFNI | CGCG | 4 cut(s) | 233, 387, 1134, 3239 |
| BstH2I | RGCGCY | 3 cut(s) | 2003, 3016, 4560 |
| BstHHI | GCGC | 7 cut(s) | 613, 2002, 2953, 3015, 3239, 4223, 4559 |
| BstMAI | GTCTC | 5 cut(s) | 1794, 2056, 2629, 2997, 4124 |
| BstMCI | CGRYCG | 1 cut(s) | 3010 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 87, 2463, 2972, 3236, 4379 |
| BstNI | CCWGG | 8 cut(s) | 272, 676, 1864, 3129, 3993, 4122, 4188, 4456 |
| BstNSI | RCATGY | 6 cut(s) | 611, 1314, 1607, 1888, 3394, 4320 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1887 |
| BstPI | GGTNACC | 2 cut(s) | 1739, 1826 |
| BstSCI | CCNGG | 9 cut(s) | 270, 674, 1862, 2619, 3127, 3991, 4120, 4186, 4454 |
| BstSFI | CTRYAG | 2 cut(s) | 1457, 2847 |
| BstSLI | GKGCMC | 3 cut(s) | 1692, 2108, 4006 |
| BstSNI | TACGTA | 2 cut(s) | 857, 2447 |
| BstUI | CGCG | 4 cut(s) | 233, 387, 1134, 3239 |
| BstV1I | GCAGC | 7 cut(s) | 113, 446, 1915, 2162, 2444, 2861, 4229 |
| BstV2I | GAAGAC | 4 cut(s) | 37, 2114, 2468, 4315 |
| BstX2I | RGATCY | 8 cut(s) | 172, 267, 325, 537, 1408, 1443, 3889, 3943 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3201 |
| BstYI | RGATCY | 8 cut(s) | 172, 267, 325, 537, 1408, 1443, 3889, 3943 |
| BstZ17I | GTATAC | 1 cut(s) | 4322 |
| Bsu15I | ATCGAT | 1 cut(s) | 3006 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3090 |
| BsuI | GTATCC | 1 cut(s) | 1525 |
| BsuTUI | ATCGAT | 1 cut(s) | 3006 |
| BtgI | CCRYGG | 2 cut(s) | 3410, 4368 |
| BtsI | GCAGTG | 4 cut(s) | 1387, 2254, 2395, 3682 |
| BtsIMutI | CAGTG | 9 cut(s) | 1387, 1992, 2106, 2254, 2395, 3167, 3459, 3682, 4431 |
| BveI | ACCTGC | 1 cut(s) | 591 |
| Cac8I | GCNNGC | 7 cut(s) | 117, 1132, 1378, 2843, 2847, 4465, 4510 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2490 |
| CciI | TCATGA | 1 cut(s) | 747 |
| CfoI | GCGC | 7 cut(s) | 613, 2002, 2953, 3015, 3239, 4223, 4559 |
| Cfr10I | RCCGGY | 1 cut(s) | 4463 |
| ClaI | ATCGAT | 1 cut(s) | 3006 |
| CseI | GACGC | 3 cut(s) | 920, 1049, 1877 |
| CsiI | ACCWGGT | 1 cut(s) | 4120 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 457, 492, 2025, 2060 |
| DinI | GGCGCC | 1 cut(s) | 2001 |
| DraI | TTTAAA | 4 cut(s) | 435, 2097, 2571, 2610 |
| DraIII | CACNNNGTG | 2 cut(s) | 246, 1249 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4403 |
| DriI | GACNNNNNGTC | 3 cut(s) | 1786, 2621, 4137 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4403 |
| EaeI | YGGCCR | 4 cut(s) | 1721, 1913, 2699, 4371 |
| Eam1104I | CTCTTC | 9 cut(s) | 22, 1058, 1086, 3129, 3797, 4092, 4547, 4565, 4586 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 1786, 2621, 4137 |
| EarI | CTCTTC | 9 cut(s) | 22, 1058, 1086, 3129, 3797, 4092, 4547, 4565, 4586 |
| Ecl136II | GAGCTC | 1 cut(s) | 1166 |
| Eco105I | TACGTA | 2 cut(s) | 857, 2447 |
| Eco130I | CCWWGG | 9 cut(s) | 900, 1496, 1744, 1923, 3410, 3883, 3937, 4368, 4579 |
| Eco147I | AGGCCT | 1 cut(s) | 2079 |
| Eco24I | GRGCYC | 5 cut(s) | 1168, 1440, 1692, 3255, 4006 |
| Eco31I | GGTCTC | 1 cut(s) | 2629 |
| Eco32I | GATATC | 2 cut(s) | 1477, 3004 |
| Eco47I | GGWCC | 5 cut(s) | 4, 1780, 3917, 4575, 4626 |
| Eco47III | AGCGCT | 1 cut(s) | 4558 |
| Eco53kI | GAGCTC | 1 cut(s) | 1166 |
| Eco57I | CTGAAG | 3 cut(s) | 1635, 1994, 2783 |
| Eco81I | CCTNAGG | 1 cut(s) | 3090 |
| Eco88I | CYCGRG | 6 cut(s) | 72, 1439, 2198, 3520, 4005, 4629 |
| Eco91I | GGTNACC | 2 cut(s) | 1739, 1826 |
| EcoICRI | GAGCTC | 1 cut(s) | 1166 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1689, 1780, 2683, 4575, 4626 |
| EcoO65I | GGTNACC | 2 cut(s) | 1739, 1826 |
| EcoRII | CCWGG | 8 cut(s) | 270, 674, 1862, 3127, 3991, 4120, 4186, 4454 |
| EcoRV | GATATC | 2 cut(s) | 1477, 3004 |
| EcoT14I | CCWWGG | 9 cut(s) | 900, 1496, 1744, 1923, 3410, 3883, 3937, 4368, 4579 |
| EcoT38I | GRGCYC | 5 cut(s) | 1168, 1440, 1692, 3255, 4006 |
| EgeI | GGCGCC | 1 cut(s) | 2001 |
| EheI | GGCGCC | 1 cut(s) | 2001 |
| ErhI | CCWWGG | 9 cut(s) | 900, 1496, 1744, 1923, 3410, 3883, 3937, 4368, 4579 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 117, 149, 4272, 4304 |
| FaqI | GGGAC | 7 cut(s) | 609, 1746, 1793, 3170, 3184, 3926, 4597 |
| FauI | CCCGC | 2 cut(s) | 1722, 3195 |
| FauNDI | CATATG | 1 cut(s) | 2139 |
| FblI | GTMKAC | 2 cut(s) | 129, 4321 |
| Fnu4HI | GCNGC | 8 cut(s) | 102, 460, 652, 1929, 2176, 2458, 2850, 4243 |
| FriOI | GRGCYC | 5 cut(s) | 1168, 1440, 1692, 3255, 4006 |
| Fsp4HI | GCNGC | 8 cut(s) | 102, 460, 652, 1929, 2176, 2458, 2850, 4243 |
| FspBI | CTAG | 5 cut(s) | 975, 1274, 1301, 4325, 4580 |
| GlaI | GCGC | 7 cut(s) | 612, 2001, 2952, 3014, 3238, 4222, 4558 |
| GluI | GCNGC | 8 cut(s) | 102, 460, 652, 1929, 2176, 2458, 2850, 4243 |
| GsaI | CCCAGC | 1 cut(s) | 3913 |
| GsuI | CTGGAG | 1 cut(s) | 442 |
| HaeII | RGCGCY | 3 cut(s) | 2003, 3016, 4560 |
| HapII | CCGG | 7 cut(s) | 1483, 1587, 1724, 2172, 2480, 2621, 4464 |
| HgaI | GACGC | 3 cut(s) | 920, 1049, 1877 |
| HhaI | GCGC | 7 cut(s) | 613, 2002, 2953, 3015, 3239, 4223, 4559 |
| Hin1I | GRCGYC | 2 cut(s) | 912, 2000 |
| Hin6I | GCGC | 7 cut(s) | 611, 2000, 2951, 3013, 3237, 4221, 4557 |
| HinP1I | GCGC | 7 cut(s) | 611, 2000, 2951, 3013, 3237, 4221, 4557 |
| HincII | GTYRAC | 3 cut(s) | 1876, 3028, 4098 |
| HindII | GTYRAC | 3 cut(s) | 1876, 3028, 4098 |
| HindIII | AAGCTT | 3 cut(s) | 1261, 1617, 2006 |
| HpaI | GTTAAC | 1 cut(s) | 3028 |
| HpaII | CCGG | 7 cut(s) | 1483, 1587, 1724, 2172, 2480, 2621, 4464 |
| HphI | GGTGA | 5 cut(s) | 274, 541, 773, 4174, 4404 |
| Hpy99I | CGWCG | 1 cut(s) | 164 |
| HpyCH4III | ACNGT | 9 cut(s) | 716, 1361, 1739, 2030, 2486, 2728, 2991, 3184, 3326 |
| HpyCH4IV | ACGT | 8 cut(s) | 621, 856, 1114, 1183, 1237, 2446, 2592, 3820 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 87, 2463, 2972, 3236, 4379 |
| HpySE526I | ACGT | 8 cut(s) | 621, 856, 1114, 1183, 1237, 2446, 2592, 3820 |
| Hsp92I | GRCGYC | 2 cut(s) | 912, 2000 |
| HspAI | GCGC | 7 cut(s) | 611, 2000, 2951, 3013, 3237, 4221, 4557 |
| KasI | GGCGCC | 1 cut(s) | 1999 |
| Kpn2I | TCCGGA | 2 cut(s) | 1482, 2479 |
| KroI | GCCGGC | 1 cut(s) | 4463 |
| KroNI | GCCGGC | 1 cut(s) | 4465 |
| KspAI | GTTAAC | 1 cut(s) | 3028 |
| LguI | GCTCTTC | 1 cut(s) | 4547 |
| Lsp1109I | GCAGC | 7 cut(s) | 113, 446, 1915, 2162, 2444, 2861, 4229 |
| MabI | ACCWGGT | 1 cut(s) | 4120 |
| MaeI | CTAG | 5 cut(s) | 975, 1274, 1301, 4325, 4580 |
| MaeII | ACGT | 8 cut(s) | 621, 856, 1114, 1183, 1237, 2446, 2592, 3820 |
| MbiI | CCGCTC | 2 cut(s) | 119, 1729 |
| MfeI | CAATTG | 4 cut(s) | 2274, 2415, 2636, 2709 |
| MflI | RGATCY | 8 cut(s) | 172, 267, 325, 537, 1408, 1443, 3889, 3943 |
| MhlI | GDGCHC | 7 cut(s) | 1168, 1440, 1692, 2108, 3255, 3665, 4006 |
| MlsI | TGGCCA | 3 cut(s) | 1915, 2701, 4373 |
| MluNI | TGGCCA | 3 cut(s) | 1915, 2701, 4373 |
| Mly113I | GGCGCC | 1 cut(s) | 2000 |
| MlyI | GAGTC | 5 cut(s) | 1510, 2128, 2610, 2911, 4215 |
| MmeI | TCCRAC | 9 cut(s) | 357, 613, 825, 1188, 1410, 1689, 3803, 4058, 4216 |
| Mox20I | TGGCCA | 3 cut(s) | 1915, 2701, 4373 |
| MroI | TCCGGA | 2 cut(s) | 1482, 2479 |
| MroNI | GCCGGC | 1 cut(s) | 4463 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1350, 1524, 2424 |
| MscI | TGGCCA | 3 cut(s) | 1915, 2701, 4373 |
| MslI | CAYNNNNRTG | 7 cut(s) | 585, 1076, 1173, 1192, 1608, 1773, 2138 |
| Msp20I | TGGCCA | 3 cut(s) | 1915, 2701, 4373 |
| MspCI | CTTAAG | 2 cut(s) | 1973, 2114 |
| MspI | CCGG | 7 cut(s) | 1483, 1587, 1724, 2172, 2480, 2621, 4464 |
| MspR9I | CCNGG | 9 cut(s) | 272, 676, 1864, 2621, 3129, 3993, 4122, 4188, 4456 |
| MunI | CAATTG | 4 cut(s) | 2274, 2415, 2636, 2709 |
| Mva1269I | GAATGC | 3 cut(s) | 281, 1332, 3512 |
| MvaI | CCWGG | 8 cut(s) | 272, 676, 1864, 3129, 3993, 4122, 4188, 4456 |
| MvnI | CGCG | 4 cut(s) | 233, 387, 1134, 3239 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 87, 2463, 2972, 3236, 4379 |
| NaeI | GCCGGC | 1 cut(s) | 4465 |
| NarI | GGCGCC | 1 cut(s) | 2000 |
| NciI | CCSGG | 1 cut(s) | 2621 |
| NcoI | CCATGG | 2 cut(s) | 3410, 4368 |
| NdeI | CATATG | 1 cut(s) | 2139 |
| NgoMIV | GCCGGC | 1 cut(s) | 4463 |
| NmeAIII | GCCGAG | 1 cut(s) | 3644 |
| NmuCI | GTSAC | 4 cut(s) | 1889, 3536, 3683, 3695 |
| NspI | RCATGY | 6 cut(s) | 611, 1314, 1607, 1888, 3394, 4320 |
| PaeR7I | CTCGAG | 2 cut(s) | 72, 1439 |
| PagI | TCATGA | 1 cut(s) | 747 |
| PaqCI | CACCTGC | 1 cut(s) | 591 |
| PceI | AGGCCT | 1 cut(s) | 2079 |
| PciI | ACATGT | 3 cut(s) | 1603, 3390, 4316 |
| PciSI | GCTCTTC | 1 cut(s) | 4547 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1180 |
| PctI | GAATGC | 3 cut(s) | 281, 1332, 3512 |
| PdiI | GCCGGC | 1 cut(s) | 4465 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1350, 1524, 2424 |
| PflFI | GACNNNGTC | 1 cut(s) | 623 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3040 |
| PfoI | TCCNGGA | 2 cut(s) | 270, 3127 |
| PkrI | GCNGC | 8 cut(s) | 103, 461, 653, 1930, 2177, 2459, 2851, 4244 |
| Ple19I | CGATCG | 1 cut(s) | 3010 |
| PleI | GAGTC | 5 cut(s) | 1509, 2127, 2610, 2910, 4214 |
| PluTI | GGCGCC | 1 cut(s) | 2003 |
| PpsI | GAGTC | 5 cut(s) | 1509, 2127, 2610, 2910, 4214 |
| Ppu21I | YACGTR | 3 cut(s) | 857, 1238, 2447 |
| PpuMI | RGGWCCY | 3 cut(s) | 1780, 4575, 4626 |
| PscI | ACATGT | 3 cut(s) | 1603, 3390, 4316 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1887 |
| PshBI | ATTAAT | 1 cut(s) | 3429 |
| PsiI | TTATAA | 1 cut(s) | 3270 |
| Psp124BI | GAGCTC | 1 cut(s) | 1168 |
| Psp1406I | AACGTT | 2 cut(s) | 1114, 3820 |
| Psp5II | RGGWCCY | 3 cut(s) | 1780, 4575, 4626 |
| Psp6I | CCWGG | 8 cut(s) | 270, 674, 1862, 3127, 3991, 4120, 4186, 4454 |
| PspEI | GGTNACC | 2 cut(s) | 1739, 1826 |
| PspFI | CCCAGC | 1 cut(s) | 3909 |
| PspGI | CCWGG | 8 cut(s) | 270, 674, 1862, 3127, 3991, 4120, 4186, 4454 |
| PspOMI | GGGCCC | 2 cut(s) | 1688, 4002 |
| PspPPI | RGGWCCY | 3 cut(s) | 1780, 4575, 4626 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3612, 3644 |
| PstI | CTGCAG | 1 cut(s) | 2851 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2490 |
| PsuI | RGATCY | 8 cut(s) | 172, 267, 325, 537, 1408, 1443, 3889, 3943 |
| PsyI | GACNNNGTC | 1 cut(s) | 623 |
| PvuI | CGATCG | 1 cut(s) | 3010 |
| RseI | CAYNNNNRTG | 7 cut(s) | 585, 1076, 1173, 1192, 1608, 1773, 2138 |
| SacI | GAGCTC | 1 cut(s) | 1168 |
| SapI | GCTCTTC | 1 cut(s) | 4547 |
| SatI | GCNGC | 8 cut(s) | 102, 460, 652, 1929, 2176, 2458, 2850, 4243 |
| ScaI | AGTACT | 1 cut(s) | 990 |
| SchI | GAGTC | 5 cut(s) | 1510, 2128, 2610, 2911, 4215 |
| ScrFI | CCNGG | 9 cut(s) | 272, 676, 1864, 2621, 3129, 3993, 4122, 4188, 4456 |
| SduI | GDGCHC | 7 cut(s) | 1168, 1440, 1692, 2108, 3255, 3665, 4006 |
| SexAI | ACCWGGT | 1 cut(s) | 4120 |
| SfcI | CTRYAG | 2 cut(s) | 1457, 2847 |
| SfoI | GGCGCC | 1 cut(s) | 2001 |
| Sfr274I | CTCGAG | 2 cut(s) | 72, 1439 |
| SinI | GGWCC | 5 cut(s) | 4, 1780, 3917, 4575, 4626 |
| SlaI | CTCGAG | 2 cut(s) | 72, 1439 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 585, 1076, 1173, 1192, 1608, 1773, 2138 |
| SmlI | CTYRAG | 8 cut(s) | 72, 1439, 1973, 2089, 2114, 2153, 2186, 2327 |
| SmoI | CTYRAG | 8 cut(s) | 72, 1439, 1973, 2089, 2114, 2153, 2186, 2327 |
| SnaBI | TACGTA | 2 cut(s) | 857, 2447 |
| SseBI | AGGCCT | 1 cut(s) | 2079 |
| SsiI | CCGC | 8 cut(s) | 119, 429, 651, 1134, 1729, 3188, 3239, 3558 |
| SspDI | GGCGCC | 1 cut(s) | 1999 |
| SspI | AATATT | 2 cut(s) | 1296, 3362 |
| SspMI | CTAG | 5 cut(s) | 975, 1274, 1301, 4325, 4580 |
| SstI | GAGCTC | 1 cut(s) | 1168 |
| StuI | AGGCCT | 1 cut(s) | 2079 |
| StyD4I | CCNGG | 9 cut(s) | 270, 674, 1862, 2619, 3127, 3991, 4120, 4186, 4454 |
| StyI | CCWWGG | 9 cut(s) | 900, 1496, 1744, 1923, 3410, 3883, 3937, 4368, 4579 |
| TaaI | ACNGT | 9 cut(s) | 716, 1361, 1739, 2030, 2486, 2728, 2991, 3184, 3326 |
| TaiI | ACGT | 8 cut(s) | 624, 859, 1117, 1186, 1240, 2449, 2595, 3823 |
| TatI | WGTACW | 6 cut(s) | 988, 2033, 2723, 3628, 3980, 4261 |
| TauI | GCSGC | 1 cut(s) | 654 |
| TscAI | CASTG | 9 cut(s) | 1387, 1999, 2113, 2254, 2395, 3167, 3466, 3682, 4438 |
| TseFI | GTSAC | 4 cut(s) | 1889, 3536, 3683, 3695 |
| TseI | GCWGC | 7 cut(s) | 101, 459, 1928, 2175, 2457, 2849, 4242 |
| Tsp45I | GTSAC | 4 cut(s) | 1889, 3536, 3683, 3695 |
| TspGWI | ACGGA | 5 cut(s) | 784, 2384, 3166, 3930, 4193 |
| TspRI | CASTG | 9 cut(s) | 1387, 1999, 2113, 2254, 2395, 3167, 3466, 3682, 4438 |
| Tth111I | GACNNNGTC | 1 cut(s) | 623 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3040 |
| Vha464I | CTTAAG | 2 cut(s) | 1973, 2114 |
| VneI | GTGCAC | 1 cut(s) | 2104 |
| VpaK11BI | GGWCC | 5 cut(s) | 4, 1780, 3917, 4575, 4626 |
| VspI | ATTAAT | 1 cut(s) | 3429 |
| XbaI | TCTAGA | 1 cut(s) | 1300 |
| XceI | RCATGY | 6 cut(s) | 611, 1314, 1607, 1888, 3394, 4320 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2860 |
| XhoI | CTCGAG | 2 cut(s) | 72, 1439 |
| XmaJI | CCTAGG | 1 cut(s) | 4579 |
| XmiI | GTMKAC | 2 cut(s) | 129, 4321 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1350, 1524, 2424 |
| XspI | CTAG | 5 cut(s) | 975, 1274, 1301, 4325, 4580 |
| ZrmI | AGTACT | 1 cut(s) | 990 |