RchiOBHm_Chr1g0335971

Leucine-rich repeats, outliers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000067
Physical Location & Seq
Reverse (-)
27680169 .. 27682093
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56400

Sequence Viewer

Length: 1836 bp
ATGAAGGAGTTGAGAAAACTTTACTTAGATGAGACTGCAATTATAGAAATGCCCTCGTCAATTAATGATCTTTCCGGGCTGCATGCTTTGAGCCTCGCTGGTTGCAGAGAACTCAGGAGTCTTCCGAGCAGCATTCACATGAAATCTCTGGAATATGTTTGTCTATCTGGCTGCTCGAAACTTACGGAGTTTCCAGAGATTTCAGAAGTAATGAAGGTGCTAAGGGTGCTTAGATTAGACGGGACAGCAATTAAAGAACTACCCTCATCTATTAATAACCTTACTGGGCTTGAGGAGTTGAGTATGAGAAACTGCAGAAGCCTTGTCTGTCTTCCCGACAATATCTGCAATTTGGCATGCCTTCATTATCTCAATCTGACTGAGTGCTCTAACCTTTCAAAGTTGCCTGAGAACTTTGGGAATTTGACATTCTTGGGTAGAAAGGAGAAATATGCGGTGACAGCCTTACATAGATATTATGAACTCTGTCTTGGACTAGAGGGAGGTGATGAGGAAGACAGATGCATTGAACTGGAGGGAAGTGGAATAAAACAACTTCCATTTTCTATCTCGTGTATGGAATCATTATCATGTAATGGATGTAAAGAAATGACGGCGCCCTTTTCCTCGTGGCCAACATGGAACCACCAAAATCCTACGTACTCTCTTCTGGGTAAACTTAATTTAAGCGACTGCAATCTCTTGGAATTATCGGATGGTATTGCTCATTTATCTTCATTGGAAACATTAATACTGCGCAGAAACAAGAATTTGGAAAGTTTACCTGCAGCAATGAATCGCTTGGGTTGTTTAGAACGGCTCTATCTGGAAGGTTGCAAGAGACTGAAATCAATACCAGAGCTTTCATCAAGTATATTAGAAATAAAGGCCGAGAATTGCACATCTTTGGAGACAGTTTCAACACCACAGCTTCCGTGTGGTGAACAGATTTTCTTCAGATTTTTTAATTGCTTCAAGCTGGTGAATACCAATCTATTTATAGATAATGTGGAAACTGCTACTGATAATCAGGAGAATGATTCTGTTTTTGGTCGTTATTACCATATGACTATGTCTCTTCCTGGAAGTGATATTCCAGATTGGTTCAACCATCAGAGTAGAGGGTCTTCCGTAACTGTGCAGTTACCACCCAATTGGCTCGCAAACAAGTTTCTGGGGTTCGCTATATGCGCCATCAGTAACTTGCGGGGTGCTGATAATAGAAAAAATCTTACATCTGCTTCCTGTTGCTGTACCTTACAAGCAAATGATGGTCAGGACAATTTCTCCTATTTTCCTTTGTTCCATTTTCTAGATGGAACGGACGTGCCCCTTGAGTCGGATCATATGTTCCTCGGATATACAAATTCCCGAACTTTAAGAGAGTCGTCCTGTAAACGCAAATACACTGAGGCCAGATTTAGGATAGTGGTAGGGCCTGATTCAACGACATTGGAAGATTGCACTTGGATCAAAAGTTGCGGGGTTCGGTTATTCCCCATGAGTCCACCATTCTCTGTGGACCTTATTTGCAATTTGGAAAATAGAGAAACAGAGATAAGTAGTAGTGCTCAGGAGGGAACACTAGAGAGAGGGAAAGAGAAGATGGCGGTGGAGGTGCAAGAAGAGGGGGAGGAGTGCTCAGGAGGTCCCATATGCTGCTTCTCGTTGAGTGGGTGCACTATTTCGTTGAGAAAGAGAAGAGAGAGAAAAATAGGAAGAGGGATAGGGCGTCAGAGGAAGCGGATGTCTCAGGGGAAGGGGAACTCCTCACATTGTCTCTCTAGGTATCTATCATCATTACAACTTTCCATATATACTCCATTTGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8

Protein Analysis

611

Amino Acids

68.48

Weight (kDa)

5.9

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 47 - 133 2.5e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 69 - 146 9.4e-11 Leucine-rich repeat region
LRR_8 PF13855 224 - 279 3.6e-06 Leucine rich repeat
LRR_14 PF23598 227 - 289 5.6e-06 Leucine-rich repeat region
C-JID PF20160 360 - 499 4.1e-21 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 758
Acc36I ACCTGC 1 cut(s) 793
AccB1I GGYRCC 1 cut(s) 616
AciI CCGC 5 cut(s) 455, 1207, 1482, 1610, 1744
AclWI GGATC 2 cut(s) 1350, 1478
AcoI YGGCCR 1 cut(s) 632
AcsI RAATTY 4 cut(s) 421, 769, 1366, 1830
AcuI CTGAAG 1 cut(s) 940
AcyI GRCGYC 2 cut(s) 617, 1732
AfaI GTAC 2 cut(s) 662, 1255
AfiI CCNNNNNNNGG 2 cut(s) 1339, 1422
AgsI TTSAA 7 cut(s) 399, 530, 921, 976, 1108, 1446, 1829
AjiI CACGTC 1 cut(s) 1327
AjnI CCWGG 1 cut(s) 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AloI GAACNNNNNNTCC 2 cut(s) 1334, 1366
AluBI AGCT 3 cut(s) 862, 931, 979
AluI AGCT 3 cut(s) 862, 931, 979
Alw21I GWGCWC 4 cut(s) 389, 1573, 1643, 1682
Alw26I GTCTC 6 cut(s) 26, 835, 905, 1080, 1755, 1784
Alw44I GTGCAC 1 cut(s) 1678
AlwI GGATC 2 cut(s) 1350, 1478
AoxI GGCC 4 cut(s) 632, 888, 1413, 1436
ApaLI GTGCAC 1 cut(s) 1678
ApeKI GCWGC 5 cut(s) 79, 129, 171, 788, 1659
ApoI RAATTY 4 cut(s) 421, 769, 1366, 1830
AseI ATTAAT 3 cut(s) 63, 273, 749
AspLEI GCGC 3 cut(s) 619, 759, 1193
AspS9I GGNCC 3 cut(s) 1436, 1522, 1649
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 4 cut(s) 469, 518, 953, 994
AvaII GGWCC 2 cut(s) 1522, 1649
BaeGI GKGCMC 2 cut(s) 1332, 1682
BalI TGGCCA 1 cut(s) 634
BanI GGYRCC 1 cut(s) 616
BarI GAAGNNNNNNTAC 2 cut(s) 1111, 1143
BauI CACGAG 2 cut(s) 571, 628
BbsI GAAGAC 4 cut(s) 113, 323, 522, 1119
Bbv12I GWGCWC 4 cut(s) 389, 1573, 1643, 1682
BbvI GCAGC 5 cut(s) 66, 141, 158, 800, 1646
BccI CCATC 6 cut(s) 710, 1119, 1202, 1265, 1310, 1600
BceAI ACGGC 2 cut(s) 630, 833
BciT130I CCWGG 1 cut(s) 1083
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 6 cut(s) 26, 835, 905, 1080, 1755, 1784
BfaI CTAG 4 cut(s) 497, 1313, 1586, 1785
BfmI CTRYAG 2 cut(s) 313, 786
BfoI RGCGCY 1 cut(s) 620
BfuAI ACCTGC 1 cut(s) 793
BisI GCNGC 5 cut(s) 80, 130, 172, 789, 1660
BlsI GCNGC 5 cut(s) 81, 131, 173, 790, 1661
Bme1390I CCNGG 2 cut(s) 76, 1083
Bme18I GGWCC 2 cut(s) 1522, 1649
BmgBI CACGTC 1 cut(s) 1327
BmgT120I GGNCC 3 cut(s) 1436, 1522, 1649
BmiI GGNNCC 3 cut(s) 618, 644, 1651
BmrFI CCNGG 2 cut(s) 76, 1083
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 512
BmuI ACTGGG 1 cut(s) 294
BpiI GAAGAC 4 cut(s) 113, 323, 522, 1119
BplI GAGNNNNNCTC 2 cut(s) 1625, 1657
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 3 cut(s) 221, 1572, 1642
BpuEI CTTGAG 2 cut(s) 311, 1355
BpuMI CCSGG 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 660
BsaHI GRCGYC 2 cut(s) 617, 1732
BsaJI CCNNGG 1 cut(s) 1354
BsaXI ACNNNNNCTCC 2 cut(s) 1271, 1301
Bsc4I CCNNNNNNNGG 2 cut(s) 1339, 1422
Bse1I ACTGG 2 cut(s) 289, 537
Bse3DI GCAATG 1 cut(s) 798
BseBI CCWGG 1 cut(s) 1083
BseDI CCNNGG 1 cut(s) 1354
BseGI GGATG 3 cut(s) 605, 721, 1752
BseLI CCNNNNNNNGG 2 cut(s) 1339, 1422
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 7 cut(s) 127, 372, 399, 1401, 1586, 1656, 1766
BseNI ACTGG 2 cut(s) 289, 537
BseRI GAGGAG 3 cut(s) 308, 1649, 1759
BseSI GKGCMC 2 cut(s) 1332, 1682
BseXI GCAGC 5 cut(s) 66, 141, 158, 800, 1646
BsgI GTGCAG 1 cut(s) 1160
BshFI GGCC 4 cut(s) 634, 890, 1415, 1438
BshNI GGYRCC 1 cut(s) 616
BsiHKAI GWGCWC 4 cut(s) 389, 1573, 1643, 1682
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 2 cut(s) 256, 1635
BslI CCNNNNNNNGG 2 cut(s) 1339, 1422
BsmAI GTCTC 6 cut(s) 26, 835, 905, 1080, 1755, 1784
BsmFI GGGAC 2 cut(s) 256, 1635
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 4 cut(s) 634, 890, 1415, 1438
Bsp1286I GDGCHC 5 cut(s) 389, 1332, 1573, 1643, 1682
Bsp143I GATC 3 cut(s) 67, 1342, 1470
BspACI CCGC 5 cut(s) 455, 1207, 1482, 1610, 1744
BspANI GGCC 4 cut(s) 634, 890, 1415, 1438
BspCNI CTCAG 7 cut(s) 126, 373, 400, 1402, 1585, 1655, 1765
BspLI GGNNCC 3 cut(s) 618, 644, 1651
BspMAI CTGCAG 2 cut(s) 317, 790
BspMI ACCTGC 1 cut(s) 793
BspPI GGATC 2 cut(s) 1350, 1478
BspT107I GGYRCC 1 cut(s) 616
BsrDI GCAATG 1 cut(s) 798
BsrI ACTGG 2 cut(s) 289, 537
BssECI CCNNGG 1 cut(s) 1354
BssMI GATC 3 cut(s) 67, 1342, 1470
BssNI GRCGYC 2 cut(s) 617, 1732
BssSI CACGAG 2 cut(s) 571, 628
Bst2BI CACGAG 2 cut(s) 571, 628
Bst2UI CCWGG 1 cut(s) 1083
Bst4CI ACNGT 2 cut(s) 916, 1138
Bst6I CTCTTC 5 cut(s) 672, 1083, 1620, 1696, 1714
BstACI GRCGYC 2 cut(s) 617, 1732
BstBAI YACGTR 1 cut(s) 660
BstC8I GCNNGC 3 cut(s) 84, 358, 1161
BstF5I GGATG 3 cut(s) 605, 721, 1752
BstH2I RGCGCY 1 cut(s) 620
BstHHI GCGC 3 cut(s) 619, 759, 1193
BstKTI GATC 3 cut(s) 70, 1345, 1473
BstMAI GTCTC 6 cut(s) 26, 835, 905, 1080, 1755, 1784
BstMBI GATC 3 cut(s) 67, 1342, 1470
BstMWI GCNNNNNNNGC 3 cut(s) 226, 461, 1190
BstNI CCWGG 1 cut(s) 1083
BstNSI RCATGY 2 cut(s) 86, 360
BstSCI CCNGG 2 cut(s) 74, 1081
BstSFI CTRYAG 2 cut(s) 313, 786
BstSLI GKGCMC 2 cut(s) 1332, 1682
BstSNI TACGTA 1 cut(s) 660
BstV1I GCAGC 5 cut(s) 66, 141, 158, 800, 1646
BstV2I GAAGAC 4 cut(s) 113, 323, 522, 1119
BstXI CCANNNNNNTGG 1 cut(s) 1155
BsuRI GGCC 4 cut(s) 634, 890, 1415, 1438
BtrI CACGTC 1 cut(s) 1327
BtsCI GGATG 3 cut(s) 605, 721, 1752
BtsIMutI CAGTG 1 cut(s) 1407
BveI ACCTGC 1 cut(s) 793
Cac8I GCNNGC 3 cut(s) 84, 358, 1161
CfoI GCGC 3 cut(s) 619, 759, 1193
Cfr13I GGNCC 3 cut(s) 1436, 1522, 1649
CseI GACGC 1 cut(s) 1721
Csp6I GTAC 2 cut(s) 661, 1254
CviAII CATG 6 cut(s) 83, 139, 357, 591, 639, 1501
CviQI GTAC 2 cut(s) 661, 1254
DinI GGCGCC 1 cut(s) 618
DpnI GATC 3 cut(s) 69, 1344, 1472
DpnII GATC 3 cut(s) 67, 1342, 1470
EaeI YGGCCR 1 cut(s) 632
Eam1104I CTCTTC 5 cut(s) 672, 1083, 1620, 1696, 1714
EarI CTCTTC 5 cut(s) 672, 1083, 1620, 1696, 1714
Eco105I TACGTA 1 cut(s) 660
Eco47I GGWCC 2 cut(s) 1522, 1649
Eco57I CTGAAG 1 cut(s) 940
EcoO109I RGGNCCY 2 cut(s) 1436, 1649
EcoRII CCWGG 1 cut(s) 1081
EcoT22I ATGCAT 1 cut(s) 527
EgeI GGCGCC 1 cut(s) 618
EheI GGCGCC 1 cut(s) 618
FaeI CATG 6 cut(s) 86, 142, 360, 594, 642, 1504
FaqI GGGAC 2 cut(s) 256, 1635
FatI CATG 6 cut(s) 82, 138, 356, 590, 638, 1500
FauI CCCGC 2 cut(s) 1200, 1475
FauNDI CATATG 3 cut(s) 1065, 1347, 1655
Fnu4HI GCNGC 5 cut(s) 80, 130, 172, 789, 1660
FokI GGATG 3 cut(s) 612, 728, 1759
Fsp4HI GCNGC 5 cut(s) 80, 130, 172, 789, 1660
FspBI CTAG 4 cut(s) 497, 1313, 1586, 1785
FspI TGCGCA 1 cut(s) 758
GlaI GCGC 3 cut(s) 618, 758, 1192
GluI GCNGC 5 cut(s) 80, 130, 172, 789, 1660
GsuI CTGGAG 1 cut(s) 554
HaeII RGCGCY 1 cut(s) 620
HaeIII GGCC 4 cut(s) 634, 890, 1415, 1438
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 1721
HhaI GCGC 3 cut(s) 619, 759, 1193
Hin1I GRCGYC 2 cut(s) 617, 1732
Hin1II CATG 6 cut(s) 86, 142, 360, 594, 642, 1504
Hin6I GCGC 3 cut(s) 617, 757, 1191
HinP1I GCGC 3 cut(s) 617, 757, 1191
HinfI GANTC 8 cut(s) 118, 581, 796, 1040, 1337, 1385, 1442, 1504
HpaII CCGG 1 cut(s) 75
HphI GGTGA 4 cut(s) 469, 518, 953, 994
Hpy166II GTNNAC 7 cut(s) 677, 782, 944, 1397, 1508, 1522, 1680
Hpy188I TCNGA 9 cut(s) 126, 205, 378, 715, 959, 1116, 1342, 1358, 1737
Hpy8I GTNNAC 7 cut(s) 677, 782, 944, 1397, 1508, 1522, 1680
HpyAV CCTTC 4 cut(s) 208, 371, 824, 1753
HpyCH4III ACNGT 2 cut(s) 916, 1138
HpyCH4IV ACGT 2 cut(s) 659, 1326
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 461, 1190
HpySE526I ACGT 2 cut(s) 659, 1326
Hsp92I GRCGYC 2 cut(s) 617, 1732
Hsp92II CATG 6 cut(s) 86, 142, 360, 594, 642, 1504
HspAI GCGC 3 cut(s) 617, 757, 1191
KasI GGCGCC 1 cut(s) 616
Kzo9I GATC 3 cut(s) 67, 1342, 1470
Lsp1109I GCAGC 5 cut(s) 66, 141, 158, 800, 1646
LweI GCATC 1 cut(s) 512
MaeI CTAG 4 cut(s) 497, 1313, 1586, 1785
MaeII ACGT 2 cut(s) 659, 1326
MaeIII GTNAC 4 cut(s) 457, 1132, 1143, 1199
MalI GATC 3 cut(s) 69, 1344, 1472
MboI GATC 3 cut(s) 67, 1342, 1470
MfeI CAATTG 1 cut(s) 1153
MhlI GDGCHC 5 cut(s) 389, 1332, 1573, 1643, 1682
MlsI TGGCCA 1 cut(s) 634
MluNI TGGCCA 1 cut(s) 634
Mly113I GGCGCC 1 cut(s) 617
MlyI GAGTC 4 cut(s) 127, 1346, 1394, 1513
MmeI TCCRAC 1 cut(s) 1320
Mox20I TGGCCA 1 cut(s) 634
Mph1103I ATGCAT 1 cut(s) 527
MscI TGGCCA 1 cut(s) 634
MseI TTAA 8 cut(s) 63, 252, 273, 681, 686, 749, 966, 1379
MslI CAYNNNNRTG 2 cut(s) 137, 589
Msp20I TGGCCA 1 cut(s) 634
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 76, 1083
MunI CAATTG 1 cut(s) 1153
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 1 cut(s) 1083
MwoI GCNNNNNNNGC 3 cut(s) 226, 461, 1190
NarI GGCGCC 1 cut(s) 617
NciI CCSGG 1 cut(s) 76
NdeI CATATG 3 cut(s) 1065, 1347, 1655
NdeII GATC 3 cut(s) 67, 1342, 1470
NlaIII CATG 6 cut(s) 86, 142, 360, 594, 642, 1504
NlaIV GGNNCC 3 cut(s) 618, 644, 1651
NmeAIII GCCGAG 1 cut(s) 916
NmuCI GTSAC 1 cut(s) 457
NsbI TGCGCA 1 cut(s) 758
NsiI ATGCAT 1 cut(s) 527
NspI RCATGY 2 cut(s) 86, 360
PaeI GCATGC 2 cut(s) 86, 360
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 4 cut(s) 581, 796, 1040, 1442
PflFI GACNNNGTC 1 cut(s) 1072
PfoI TCCNGGA 1 cut(s) 1081
PkrI GCNGC 5 cut(s) 81, 131, 173, 790, 1661
PleI GAGTC 4 cut(s) 126, 1345, 1393, 1512
PluTI GGCGCC 1 cut(s) 620
PpsI GAGTC 4 cut(s) 126, 1345, 1393, 1512
Ppu21I YACGTR 1 cut(s) 660
PpuMI RGGWCCY 1 cut(s) 1649
PshBI ATTAAT 3 cut(s) 63, 273, 749
Psp5II RGGWCCY 1 cut(s) 1649
Psp6I CCWGG 1 cut(s) 1081
PspGI CCWGG 1 cut(s) 1081
PspN4I GGNNCC 3 cut(s) 618, 644, 1651
PspPI GGNCC 3 cut(s) 1436, 1522, 1649
PspPPI RGGWCCY 1 cut(s) 1649
PstI CTGCAG 2 cut(s) 317, 790
PsyI GACNNNGTC 1 cut(s) 1072
RsaI GTAC 2 cut(s) 662, 1255
RsaNI GTAC 2 cut(s) 661, 1254
RseI CAYNNNNRTG 2 cut(s) 137, 589
SaqAI TTAA 8 cut(s) 63, 252, 273, 681, 686, 749, 966, 1379
SatI GCNGC 5 cut(s) 80, 130, 172, 789, 1660
Sau3AI GATC 3 cut(s) 67, 1342, 1470
Sau96I GGNCC 3 cut(s) 1436, 1522, 1649
SchI GAGTC 4 cut(s) 127, 1346, 1394, 1513
ScrFI CCNGG 2 cut(s) 76, 1083
SduI GDGCHC 5 cut(s) 389, 1332, 1573, 1643, 1682
SfaNI GCATC 1 cut(s) 512
SfcI CTRYAG 2 cut(s) 313, 786
SfoI GGCGCC 1 cut(s) 618
SinI GGWCC 2 cut(s) 1522, 1649
SmiMI CAYNNNNRTG 2 cut(s) 137, 589
SmlI CTYRAG 2 cut(s) 290, 1334
SmoI CTYRAG 2 cut(s) 290, 1334
SnaBI TACGTA 1 cut(s) 660
SphI GCATGC 2 cut(s) 86, 360
SsiI CCGC 5 cut(s) 455, 1207, 1482, 1610, 1744
SspDI GGCGCC 1 cut(s) 616
SspMI CTAG 4 cut(s) 497, 1313, 1586, 1785
StyD4I CCNGG 2 cut(s) 74, 1081
TaaI ACNGT 2 cut(s) 916, 1138
TaiI ACGT 2 cut(s) 662, 1329
TaqI TCGA 1 cut(s) 176
TfiI GAWTC 4 cut(s) 581, 796, 1040, 1442
Tru1I TTAA 8 cut(s) 63, 252, 273, 681, 686, 749, 966, 1379
Tru9I TTAA 8 cut(s) 63, 252, 273, 681, 686, 749, 966, 1379
TscAI CASTG 1 cut(s) 1414
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 5 cut(s) 79, 129, 171, 788, 1659
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 8 cut(s) 17, 155, 227, 353, 495, 726, 809, 855
TspGWI ACGGA 4 cut(s) 200, 924, 1120, 1337
TspRI CASTG 1 cut(s) 1414
Tth111I GACNNNGTC 1 cut(s) 1072
VneI GTGCAC 1 cut(s) 1678
VpaK11BI GGWCC 2 cut(s) 1522, 1649
VspI ATTAAT 3 cut(s) 63, 273, 749
XapI RAATTY 4 cut(s) 421, 769, 1366, 1830
XbaI TCTAGA 1 cut(s) 1312
XceI RCATGY 2 cut(s) 86, 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 1313
XspI CTAG 4 cut(s) 497, 1313, 1586, 1785
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.