FvH4_7g26071

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000067
Physical Location & Seq
Forward (+)
19807410 .. 19812908
5499 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26071.t1

Sequence Viewer

Length: 4029 bp
ATGGCTGATTCTTCATCTCTCTCATCTGGTGGCCGTTGGAACTATGATGTGTTCCTCAGTTTTAGAGGTCAGGATACACGCAAAATCTTTGTCGGCCATCTCCACAAGGCTCTTGATCTGAAAGCAATCAACTCATTCATAGACTCTGAAGATCTCTGCATTGGCAACGACCTTTCAGAGTTGCTCAGGGCTATTGAAGACTCCAGGCTCTATATTGTAGTTTTCTCCCAAAACTATGCTTCTTCCTCATGGTGCTTGAAAGAACTGGTTAAGATACTTGAATGCGCATCAACGAAGAAGCAGTCAGTGATACCCATTTTCTATGAAGTAGATCCATCTGATATCCGCAAACTGAAGGGGAGCTTTGGAGAGGCTTTTGCGAAACATGAGCAGGATGCTAATGCTGACATCAATGAGGTAAAGAAGTGGAAGATTGCTCTAACTGAAGCCAGCAAGTTATCTGGATGGGATTCACGAAATTACAGGGATGATGCCAAGTTTATTGAAAAAATTGTAGAAGATATTTCCGAAAAATTGGCCCACATCTCCTCCAGTAAAGTCAATGACTTGGTTGGAATGGATTCCCACATAGAGAAAATGTGTGCACTGTTATGTCTTGGAGAGGATGGTGTTCGTGTTGTTGGAGTTTGCGGAATGCCTGGTATAGGAAAAACAACCATTGCTAGAGCTGTTTATGAAGAAATTGTTTGTCAATTTGAACACTATTGCTTTCTTGACAATGTCAAGGATGGTTTCAAGAACAATGGTGCAATACACATGCAGGAAGAACTTCTTTCTAGAATCTTTGAGAAAAGAGTCCGTTGTCTAGGCACTTTGAGTAAAGGATCCAAGATGATAATGGAAAGATTGAGCAAGAAAAAAGTTCTGCTTGTTCTTGATGATGTAGAAAACTTTGCACAAATTGAAGCATTACTTGGAAAACAGCATTCATTTGGTGGTGGAAGTAGAATCATTGTAACCACTAGAGATATACAGTCACTCAGTGGAGTTAATGCAAGATACAGTCCCACGTTTCTAAGTGATGATGCAGCTCTTGAGCTCTTCAAGCAGTATGCCTTCCGAACAAACCAACCTACAAAAGATTATGATCCTCTCTTAAGGCATGCCTTAGAATATGCTCAAGGTCTGCCTCTAGCACTCAAAGTTTTGGGAGCTTTTCTAGATAACAAAAGTATACATGAGTGGGAAGATGAGCTAGAGAAAATAAAGGAAATTCCACATTTAGAGATTCAAGTAGTGCTTAGAACAAGTTATGATGGCCTGGATCCTTCTCAGAAGGACATATTCCTAGATATTGCATGCTTCTTTAGAGGAATGGAGAAAGGCTATGTAACCAAAATTATGGAAAGTTGTGGCTTCTATCCTCATAGTGGATTGCGAGTGCTAATTGATAGAGCTCTTGTAACTGTTTCAGATGACAATAGGCTGGAAATGCATGATCTAATAAAGGATATGGGTTGGGAGATTATCCGCCAACAATCTATTAAAGAGCCTGGGAAGCGCAGTAGGTTGTGGATTTATGAAGATGTTGCTCGTGTATTAACTCAAAATATGGCTACAGATGCAGTTGAATGCATAATGCTAGACTTGTCGAAGTCAAAAGATGTCTACATAGATGCTGAAGCTTTTGTTAGAATGACGAAACTAAGACTTCTCAGAATCGGTTATTACCACTCGATAGACTTGAATGCAAAAGAATTTCAATTGAAGCACCATCCAAGAGATGAGTGTAAACAACATGTGAGTGGGGATGTAAAGTATCTCTCTGATGACTTGAGGTATCTCATGTGGTATGGATGCCCCCTGAAGTCTTTGCCAGCCAATTTTCACCCGAAGAATCTGGTTGACCTTGACATGCGTTGTAGCCATATTGAACAACTTTGGAAAGAAACCAAGCCTTTCAAAAAATTGAAATTCATCAATTTGAGTCATTCTCATAACCTTATTGCAACTCCAGACTTCACTGAAGCAACAAATGTGGAAACACTAATTCTTGAAGGTTGTTCCAGTTTACTTCATGTTAACTCTTCCATTTCAGCTCTTAAAAACCTCATATTCTTGTGCCTTAGAGGATGTAAAGAACTAAAGAGTCTTCCAAGCAGCATTTGTTTGAAGTCTCTTAAAACCCTTGATCTTTCTGGCTGCTCAAGTCTTGTAAAGTTCCCAGAGATTTCAGGAATTATGGAGGACTTATCAGAAATTTATCTAAATGGGACTGCAATTGAGGAAATGCCCCCATCAATTGAACGACTTCAGGGGCTTGTGCTATTACATATGAGAGACTGTAGAAGCCTTGTCCATCTTCCGGAGAAGATATGTAATTTGGTATATCTTAAGGATCTCACTCTCTCTGGGTGCTCAAAGCTTTATCATTTGCCTGAGAACTTGGGGAATTTAAAATCTTTGATGTGCCTTGAAGTAGAAGGAAGTGGTATCAGAAAACTCCCAGTTTCTATCTTATGCTTGAAAAGGCTGAAAACACTATCATGTGGTGGATGTAATAACATGAAGGAGCCCTTTTCATCATGGCCACCATTGATCGAAGAATATTGTAATTACTCTGGTCTGGTACATCTTGATTTAAGTGACAGTAATCTGTGGGAATTATCAGATGGTATTGCTCAGTTGTCCTCATTGAAAACCTTAGAGCTGCGTGGAACCAACTTGGAAAGCTTACCTGCAACGATGAATCAACTTCTTTGTTTGACCCGTCTTGAATTGGAAGCTTGCAGAAGACTGAAATCAGTACCGGAGCTTCCATCAAGTATACATTTCATAGATGCTCATGACTGCAGTGCTTTGGAAAGCGTTGCAAAACCGAATACTGGGTGCTCTATGAATCTTTGCTTCACATTTTCTAATTGCCTCCAACTGGTACAAACTAATCTGTTTACAGAGATTGTGGAAATTCATCCTCATTACCAGGATAATAATCAACGTTCACTTTCGTTTAATATGTCTCTTCCCGGAAGTGAAGTTCCTGATTGGTTCAATAATCAATGTAGGGGATCCTCAGTAACTGTAAAGCTACCCCCAAATTGGTTTGATAATGAGTTTTTGGGGTTCGCTATATGTGCTGTTAGTGACTTCAAGGGGCCTCATAATGATGCATCTGATTTATCCGCTTTATGTCATTGTAGCTTAAAAGGAAATCATGGTTTGTACGAATTCAGTTTTACTTTGCTTGATTGGGGTTTCTCTACTGACAGGATCCTTGAGTCAGATCATATGTTCCTGGCATATGTCCCATGGTCTGAATATCGCTTCATTGAAAAGGGAAAGCGGGTCAATCAACGGTATTTTACTGAGGCCACATTTGAGATTGTACTAGAAAATAAAGTTGAAAGACATGGTTTCAGGACAGTAATAAACCGCCATTGCATCACAAGTTGTGGAGTTCGTTTGTTTCATGGTAATTACATTGATTACATGGAAGAGCAAACTCTAAGCATCAGCGAAACCAAATCTCATCATGACAGCTGTGACGTCCTTACAGTCAGTAGGAAAGGAAAAGAGGAGGTTGCAGTGCAGTTGAAGGAGTCTCTGGCAGACCACAGCTCTGCCAGCGAGAGCAAGAAGAGGCTGGGTTCGAAGGATCAGACGAATTCCTACAAGCTAAGAAAGAACATGGAGCGAATAAGGATACGTTCATCCACATTTGATGATGGTCTACCTTGGAGGAAATATGGGCAGAAGGATATCCTCGGTGCATCATATCCAAGGGCTTACTTCAGATGTACTCGCAAGTATGATCAGGGTTGCCAAGCAACCAAACAAGTCCAACAAATCCAAGACAACCCAAAGATGTATGAAACGACCTATATTGGACAGCACACATGCAAAAATATAATCCAGGATCCAAAGCTGATCATAGGTGCTGATGCCGAGGACGTTTCTAAATCTATAATAGATGGAGGATTTGCAGCATTGACTGAAAGAACCAAGTTCCAAGGAACATTGAATTCAGATTTGGACTTTCCAGACCTTGGATTCGAGAAGCCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

1343

Amino Acids

152.2

Weight (kDa)

6.21

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 14 - 191 2.2e-56 TIR domain
TIR_2 PF13676 17 - 112 4.4e-15 TIR domain
NB-ARC PF00931 195 - 363 2.2e-18 NB-ARC domain
WHD_ROQ1 PF23282 432 - 501 9.6e-22 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 620 - 639 7.2e-06 Leucine Rich Repeat
LRR_13 PF23286 711 - 796 1.7e-10 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 744 - 842 1.6e-12 Leucine-rich repeat region
LRR_13 PF23286 798 - 954 1.1e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 857 - 920 1e-07 Leucine-rich repeat region
C-JID PF20160 995 - 1144 1.2e-21 C-JID domain
WRKY PF03106 1228 - 1288 1.2e-23 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 3510
Acc16I TGCGCA 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 2707
AccB7I CCANNNNNTGG 1 cut(s) 4007
AccI GTMKAC 4 cut(s) 1195, 1629, 2788, 3691
AccIII TCCGGA 1 cut(s) 2326
AciI CCGC 6 cut(s) 346, 651, 1492, 3144, 3304, 3394
AclI AACGTT 1 cut(s) 2959
AcoI YGGCCR 3 cut(s) 31, 94, 2549
AcsI RAATTY 9 cut(s) 1233, 1718, 1934, 2220, 2413, 2928, 3188, 3625, 3982
AcuI CTGAAG 8 cut(s) 168, 374, 465, 1662, 1847, 2007, 2258, 3736
AcyI GRCGYC 1 cut(s) 3507
AdeI CACNNNGTG 1 cut(s) 1004
AfaI GTAC 6 cut(s) 2592, 2769, 2898, 3185, 3348, 3760
AfiI CCNNNNNNNGG 7 cut(s) 665, 1391, 2326, 2846, 2893, 3060, 4007
AflII CTTAAG 2 cut(s) 1117, 2354
AflIII ACRYGT 1 cut(s) 1759
AjnI CCWGG 7 cut(s) 203, 658, 1281, 1513, 2943, 3255, 3873
AjuI GAANNNNNNNTTGG 4 cut(s) 918, 950, 3974, 4006
AloI GAACNNNNNNTCC 2 cut(s) 2982, 3014
Alw21I GWGCWC 5 cut(s) 607, 1062, 1420, 2381, 2855
Alw26I GTCTC 4 cut(s) 2142, 2295, 2985, 3567
Alw44I GTGCAC 1 cut(s) 603
AlwNI CAGNNNCTG 1 cut(s) 3041
Aor13HI TCCGGA 1 cut(s) 2326
AoxI GGCC 7 cut(s) 31, 94, 537, 1279, 2549, 3116, 3330
ApaLI GTGCAC 1 cut(s) 603
ApeKI GCWGC 5 cut(s) 1049, 2121, 2163, 2671, 3944
ApoI RAATTY 9 cut(s) 1233, 1718, 1934, 2220, 2413, 2928, 3188, 3625, 3982
ArsI GACNNNNNNTTYG 6 cut(s) 75, 107, 287, 319, 3995, 4027
Asp700I GAANNNNTTC 3 cut(s) 580, 789, 2271
AspLEI GCGC 2 cut(s) 287, 1524
AspS9I GGNCC 2 cut(s) 538, 3116
AsuC2I CCSGG 1 cut(s) 2988
AsuHPI GGTGA 1 cut(s) 1841
AsuII TTCGAA 1 cut(s) 3611
BaeGI GKGCMC 1 cut(s) 607
BalI TGGCCA 1 cut(s) 2551
BamHI GGATCC 5 cut(s) 845, 1285, 3029, 3231, 3877
BanII GRGCYC 3 cut(s) 1062, 1420, 2538
BarI GAAGNNNNNNTAC 2 cut(s) 2760, 2792
BauI CACGAG 1 cut(s) 1554
BbsI GAAGAC 3 cut(s) 204, 2105, 2761
Bbv12I GWGCWC 5 cut(s) 607, 1062, 1420, 2381, 2855
BbvI GCAGC 5 cut(s) 1061, 2133, 2150, 2658, 3956
BceAI ACGGC 1 cut(s) 18
BciT130I CCWGG 7 cut(s) 205, 660, 1283, 1515, 2945, 3257, 3875
BciVI GTATCC 2 cut(s) 67, 3657
BclI TGATCA 2 cut(s) 3772, 3888
BcnI CCSGG 1 cut(s) 2988
BcoDI GTCTC 4 cut(s) 2142, 2295, 2985, 3567
BfmI CTRYAG 3 cut(s) 1578, 2305, 2812
BfrI CTTAAG 2 cut(s) 1117, 2354
BfuAI ACCTGC 1 cut(s) 2707
BfuI GTATCC 2 cut(s) 67, 3657
BglII AGATCT 1 cut(s) 151
BisI GCNGC 5 cut(s) 1050, 2122, 2164, 2672, 3945
BlsI GCNGC 5 cut(s) 1051, 2123, 2165, 2673, 3946
Bme1390I CCNGG 8 cut(s) 205, 660, 1283, 1515, 2945, 2988, 3257, 3875
BmgT120I GGNCC 2 cut(s) 538, 3116
BmiI GGNNCC 8 cut(s) 847, 1287, 2535, 2680, 3031, 3117, 3233, 3879
BmrFI CCNGG 8 cut(s) 205, 660, 1283, 1515, 2945, 2988, 3257, 3875
BmrI ACTGGG 2 cut(s) 2462, 2856
BmuI ACTGGG 2 cut(s) 2462, 2856
BpiI GAAGAC 3 cut(s) 204, 2105, 2761
BplI GAGNNNNNCTC 2 cut(s) 1939, 1971
BpmI CTGGAG 3 cut(s) 187, 535, 1959
Bpu10I CCTNAGC 1 cut(s) 185
Bpu14I TTCGAA 1 cut(s) 3611
BpuEI CTTGAG 5 cut(s) 1076, 1125, 1816, 2152, 3257
BpuMI CCSGG 1 cut(s) 2988
BsaBI GATNNNNATC 2 cut(s) 1107, 2952
BsaHI GRCGYC 1 cut(s) 3507
BsaJI CCNNGG 8 cut(s) 1514, 3269, 3695, 3724, 3740, 3906, 3970, 4006
BsaWI WCCGGW 2 cut(s) 2326, 2770
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 7 cut(s) 665, 1391, 2326, 2846, 2893, 3060, 4007
Bse1I ACTGG 6 cut(s) 270, 552, 2028, 2468, 2851, 2898
Bse3DI GCAATG 2 cut(s) 678, 3397
Bse8I GATNNNNATC 2 cut(s) 1107, 2952
BseAI TCCGGA 1 cut(s) 2326
BseBI CCWGG 7 cut(s) 205, 660, 1283, 1515, 2945, 3257, 3875
BseDI CCNNGG 8 cut(s) 1514, 3269, 3695, 3724, 3740, 3906, 3970, 4006
BseJI GATNNNNATC 2 cut(s) 1107, 2952
BseLI CCNNNNNNNGG 7 cut(s) 665, 1391, 2326, 2846, 2893, 3060, 4007
BseMI GCAATG 2 cut(s) 678, 3397
BseMII CTCAG 9 cut(s) 70, 199, 1015, 1307, 1690, 2391, 2657, 3048, 3318
BseNI ACTGG 6 cut(s) 270, 552, 2028, 2468, 2851, 2898
BseRI GAGGAG 2 cut(s) 538, 3551
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 5 cut(s) 1061, 2133, 2150, 2658, 3956
BseYI CCCAGC 1 cut(s) 3604
BsgI GTGCAG 1 cut(s) 3569
BshFI GGCC 7 cut(s) 33, 96, 539, 1281, 2551, 3118, 3332
BsiHKAI GWGCWC 5 cut(s) 607, 1062, 1420, 2381, 2855
BsiSI CCGG 3 cut(s) 2327, 2771, 2988
BslFI GGGAC 3 cut(s) 1011, 2248, 3251
BslI CCNNNNNNNGG 7 cut(s) 665, 1391, 2326, 2846, 2893, 3060, 4007
BsmAI GTCTC 4 cut(s) 2142, 2295, 2985, 3567
BsmFI GGGAC 3 cut(s) 1011, 2248, 3251
BsmI GAATGC 5 cut(s) 287, 660, 946, 1598, 1714
BsnI GGCC 7 cut(s) 33, 96, 539, 1281, 2551, 3118, 3332
Bsp119I TTCGAA 1 cut(s) 3611
Bsp1286I GDGCHC 6 cut(s) 607, 1062, 1420, 2381, 2538, 2855
Bsp13I TCCGGA 1 cut(s) 2326
Bsp19I CCATGG 1 cut(s) 3269
BspACI CCGC 6 cut(s) 346, 651, 1492, 3144, 3304, 3394
BspANI GGCC 7 cut(s) 33, 96, 539, 1281, 2551, 3118, 3332
BspCNI CTCAG 9 cut(s) 69, 198, 1014, 1306, 1689, 2392, 2656, 3047, 3319
BspEI TCCGGA 1 cut(s) 2326
BspHI TCATGA 2 cut(s) 2806, 3493
BspLI GGNNCC 8 cut(s) 847, 1287, 2535, 2680, 3031, 3117, 3233, 3879
BspMAI CTGCAG 1 cut(s) 2816
BspMI ACCTGC 1 cut(s) 2707
BspQI GCTCTTC 2 cut(s) 1067, 3450
BspT104I TTCGAA 1 cut(s) 3611
BspTI CTTAAG 2 cut(s) 1117, 2354
BsrDI GCAATG 2 cut(s) 678, 3397
BsrI ACTGG 6 cut(s) 270, 552, 2028, 2468, 2851, 2898
BssECI CCNNGG 8 cut(s) 1514, 3269, 3695, 3724, 3740, 3906, 3970, 4006
BssNAI GTATAC 2 cut(s) 1196, 2789
BssNI GRCGYC 1 cut(s) 3507
BssSI CACGAG 1 cut(s) 1554
BssT1I CCWWGG 5 cut(s) 3269, 3695, 3740, 3970, 4006
Bst1107I GTATAC 2 cut(s) 1196, 2789
Bst2BI CACGAG 1 cut(s) 1554
Bst2UI CCWGG 7 cut(s) 205, 660, 1283, 1515, 2945, 3257, 3875
Bst6I CTCTTC 5 cut(s) 1067, 2053, 2988, 3450, 3593
BstACI GRCGYC 1 cut(s) 3507
BstAFI CTTAAG 2 cut(s) 1117, 2354
BstBI TTCGAA 1 cut(s) 3611
BstC8I GCNNGC 6 cut(s) 451, 1125, 1321, 1839, 2749, 3586
BstDSI CCRYGG 1 cut(s) 3269
BstENI CCTNNNNNAGG 1 cut(s) 663
BstHHI GCGC 2 cut(s) 287, 1524
BstMAI GTCTC 4 cut(s) 2142, 2295, 2985, 3567
BstMWI GCNNNNNNNGC 6 cut(s) 1066, 1453, 1519, 1583, 3095, 3585
BstNI CCWGG 7 cut(s) 205, 660, 1283, 1515, 2945, 3257, 3875
BstNSI RCATGY 6 cut(s) 781, 1127, 1323, 1763, 1879, 3861
BstSCI CCNGG 8 cut(s) 203, 658, 1281, 1513, 2943, 2986, 3255, 3873
BstSFI CTRYAG 3 cut(s) 1578, 2305, 2812
BstSLI GKGCMC 1 cut(s) 607
BstV1I GCAGC 5 cut(s) 1061, 2133, 2150, 2658, 3956
BstV2I GAAGAC 3 cut(s) 204, 2105, 2761
BstX2I RGATCY 8 cut(s) 151, 331, 845, 1285, 2359, 3029, 3231, 3877
BstXI CCANNNNNNTGG 1 cut(s) 1363
BstYI RGATCY 8 cut(s) 151, 331, 845, 1285, 2359, 3029, 3231, 3877
BstZ17I GTATAC 2 cut(s) 1196, 2789
BsuI GTATCC 2 cut(s) 67, 3657
BsuRI GGCC 7 cut(s) 33, 96, 539, 1281, 2551, 3118, 3332
BtgI CCRYGG 1 cut(s) 3269
BtsI GCAGTG 2 cut(s) 2821, 3552
BtsIMutI CAGTG 6 cut(s) 312, 605, 1009, 1983, 2821, 3552
BveI ACCTGC 1 cut(s) 2707
Cac8I GCNNGC 6 cut(s) 451, 1125, 1321, 1839, 2749, 3586
CaiI CAGNNNCTG 1 cut(s) 3041
CciI TCATGA 2 cut(s) 2806, 3493
CfoI GCGC 2 cut(s) 287, 1524
Cfr13I GGNCC 2 cut(s) 538, 3116
Csp6I GTAC 6 cut(s) 2591, 2768, 2897, 3184, 3347, 3759
CspCI CAANNNNNGTGG 2 cut(s) 1980, 2015
CviQI GTAC 6 cut(s) 2591, 2768, 2897, 3184, 3347, 3759
DraI TTTAAA 1 cut(s) 2418
DraIII CACNNNGTG 1 cut(s) 1004
EaeI YGGCCR 3 cut(s) 31, 94, 2549
Eam1104I CTCTTC 5 cut(s) 1067, 2053, 2988, 3450, 3593
EarI CTCTTC 5 cut(s) 1067, 2053, 2988, 3450, 3593
EciI GGCGGA 1 cut(s) 1481
Ecl136II GAGCTC 2 cut(s) 1060, 1418
Eco130I CCWWGG 5 cut(s) 3269, 3695, 3740, 3970, 4006
Eco24I GRGCYC 3 cut(s) 1062, 1420, 2538
Eco32I GATATC 2 cut(s) 343, 3721
Eco53kI GAGCTC 2 cut(s) 1060, 1418
Eco57I CTGAAG 8 cut(s) 168, 374, 465, 1662, 1847, 2007, 2258, 3736
EcoICRI GAGCTC 2 cut(s) 1060, 1418
EcoNI CCTNNNNNAGG 1 cut(s) 663
EcoO109I RGGNCCY 1 cut(s) 3116
EcoRI GAATTC 3 cut(s) 3188, 3625, 3982
EcoRII CCWGG 7 cut(s) 203, 658, 1281, 1513, 2943, 3255, 3873
EcoRV GATATC 2 cut(s) 343, 3721
EcoT14I CCWWGG 5 cut(s) 3269, 3695, 3740, 3970, 4006
EcoT22I ATGCAT 3 cut(s) 1458, 1598, 3133
EcoT38I GRGCYC 3 cut(s) 1062, 1420, 2538
ErhI CCWWGG 5 cut(s) 3269, 3695, 3740, 3970, 4006
FaqI GGGAC 3 cut(s) 1011, 2248, 3251
FauI CCCGC 1 cut(s) 3297
FauNDI CATATG 3 cut(s) 2295, 3249, 3262
FbaI TGATCA 2 cut(s) 3772, 3888
FblI GTMKAC 4 cut(s) 1195, 1629, 2788, 3691
Fnu4HI GCNGC 5 cut(s) 1050, 2122, 2164, 2672, 3945
FriOI GRGCYC 3 cut(s) 1062, 1420, 2538
Fsp4HI GCNGC 5 cut(s) 1050, 2122, 2164, 2672, 3945
FspAI RTGCGCAY 1 cut(s) 286
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 2 cut(s) 286, 1523
GluI GCNGC 5 cut(s) 1050, 2122, 2164, 2672, 3945
GsaI CCCAGC 1 cut(s) 3608
GsuI CTGGAG 3 cut(s) 187, 535, 1959
HaeIII GGCC 7 cut(s) 33, 96, 539, 1281, 2551, 3118, 3332
HapII CCGG 3 cut(s) 2327, 2771, 2988
HhaI GCGC 2 cut(s) 287, 1524
Hin1I GRCGYC 1 cut(s) 3507
Hin6I GCGC 2 cut(s) 285, 1522
HinP1I GCGC 2 cut(s) 285, 1522
HincII GTYRAC 2 cut(s) 1867, 2044
HindII GTYRAC 2 cut(s) 1867, 2044
HindIII AAGCTT 4 cut(s) 1644, 2384, 2692, 2745
HpaI GTTAAC 1 cut(s) 2044
HpaII CCGG 3 cut(s) 2327, 2771, 2988
HphI GGTGA 1 cut(s) 1841
HpyCH4IV ACGT 5 cut(s) 1031, 2959, 3507, 3667, 3912
HpyF10VI GCNNNNNNNGC 6 cut(s) 1066, 1453, 1519, 1583, 3095, 3585
HpySE526I ACGT 5 cut(s) 1031, 2959, 3507, 3667, 3912
Hsp92I GRCGYC 1 cut(s) 3507
HspAI GCGC 2 cut(s) 285, 1522
Kpn2I TCCGGA 1 cut(s) 2326
Ksp22I TGATCA 2 cut(s) 3772, 3888
KspAI GTTAAC 1 cut(s) 2044
LguI GCTCTTC 2 cut(s) 1067, 3450
LmnI GCTCC 5 cut(s) 360, 1172, 2533, 2773, 3652
Lsp1109I GCAGC 5 cut(s) 1061, 2133, 2150, 2658, 3956
MaeII ACGT 5 cut(s) 1031, 2959, 3507, 3667, 3912
MaeIII GTNAC 8 cut(s) 976, 996, 1351, 1423, 2606, 3037, 3104, 3503
MfeI CAATTG 3 cut(s) 1724, 2241, 2262
MflI RGATCY 8 cut(s) 151, 331, 845, 1285, 2359, 3029, 3231, 3877
MhlI GDGCHC 6 cut(s) 607, 1062, 1420, 2381, 2538, 2855
MlsI TGGCCA 1 cut(s) 2551
MluNI TGGCCA 1 cut(s) 2551
MlyI GAGTC 7 cut(s) 137, 194, 825, 1957, 2119, 3248, 3569
MmeI TCCRAC 5 cut(s) 17, 553, 622, 2914, 3826
Mox20I TGGCCA 1 cut(s) 2551
Mph1103I ATGCAT 3 cut(s) 1458, 1598, 3133
MroI TCCGGA 1 cut(s) 2326
MroXI GAANNNNTTC 3 cut(s) 580, 789, 2271
MscI TGGCCA 1 cut(s) 2551
MslI CAYNNNNRTG 4 cut(s) 610, 1764, 2506, 3126
Msp20I TGGCCA 1 cut(s) 2551
MspA1I CMGCKG 1 cut(s) 3501
MspCI CTTAAG 2 cut(s) 1117, 2354
MspI CCGG 3 cut(s) 2327, 2771, 2988
MspR9I CCNGG 8 cut(s) 205, 660, 1283, 1515, 2945, 2988, 3257, 3875
MunI CAATTG 3 cut(s) 1724, 2241, 2262
Mva1269I GAATGC 5 cut(s) 287, 660, 946, 1598, 1714
MvaI CCWGG 7 cut(s) 205, 660, 1283, 1515, 2945, 3257, 3875
MwoI GCNNNNNNNGC 6 cut(s) 1066, 1453, 1519, 1583, 3095, 3585
NciI CCSGG 1 cut(s) 2988
NcoI CCATGG 1 cut(s) 3269
NdeI CATATG 3 cut(s) 2295, 3249, 3262
NlaIV GGNNCC 8 cut(s) 847, 1287, 2535, 2680, 3031, 3117, 3233, 3879
NmeAIII GCCGAG 1 cut(s) 3931
NmuCI GTSAC 4 cut(s) 996, 2606, 3104, 3503
NsbI TGCGCA 1 cut(s) 286
NsiI ATGCAT 3 cut(s) 1458, 1598, 3133
NspI RCATGY 6 cut(s) 781, 1127, 1323, 1763, 1879, 3861
NspV TTCGAA 1 cut(s) 3611
PaeI GCATGC 2 cut(s) 1127, 1323
PagI TCATGA 2 cut(s) 2806, 3493
PciI ACATGT 1 cut(s) 1759
PciSI GCTCTTC 2 cut(s) 1067, 3450
PctI GAATGC 5 cut(s) 287, 660, 946, 1598, 1714
PdmI GAANNNNTTC 3 cut(s) 580, 789, 2271
PflFI GACNNNGTC 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 4007
PfoI TCCNGGA 2 cut(s) 2986, 3873
PkrI GCNGC 5 cut(s) 1051, 2123, 2165, 2673, 3946
PleI GAGTC 7 cut(s) 137, 194, 824, 1956, 2118, 3247, 3568
PpsI GAGTC 7 cut(s) 137, 194, 824, 1956, 2118, 3247, 3568
PscI ACATGT 1 cut(s) 1759
Psp124BI GAGCTC 2 cut(s) 1062, 1420
Psp1406I AACGTT 1 cut(s) 2959
Psp6I CCWGG 7 cut(s) 203, 658, 1281, 1513, 2943, 3255, 3873
PspFI CCCAGC 1 cut(s) 3604
PspGI CCWGG 7 cut(s) 203, 658, 1281, 1513, 2943, 3255, 3873
PspN4I GGNNCC 8 cut(s) 847, 1287, 2535, 2680, 3031, 3117, 3233, 3879
PspPI GGNCC 2 cut(s) 538, 3116
PstI CTGCAG 1 cut(s) 2816
PstNI CAGNNNCTG 1 cut(s) 3041
PsuI RGATCY 8 cut(s) 151, 331, 845, 1285, 2359, 3029, 3231, 3877
PsyI GACNNNGTC 1 cut(s) 740
PvuII CAGCTG 1 cut(s) 3501
RsaI GTAC 6 cut(s) 2592, 2769, 2898, 3185, 3348, 3760
RsaNI GTAC 6 cut(s) 2591, 2768, 2897, 3184, 3347, 3759
RseI CAYNNNNRTG 4 cut(s) 610, 1764, 2506, 3126
SacI GAGCTC 2 cut(s) 1062, 1420
SapI GCTCTTC 2 cut(s) 1067, 3450
SatI GCNGC 5 cut(s) 1050, 2122, 2164, 2672, 3945
Sau96I GGNCC 2 cut(s) 538, 3116
SchI GAGTC 7 cut(s) 137, 194, 825, 1957, 2119, 3248, 3569
ScrFI CCNGG 8 cut(s) 205, 660, 1283, 1515, 2945, 2988, 3257, 3875
SduI GDGCHC 6 cut(s) 607, 1062, 1420, 2381, 2538, 2855
SfcI CTRYAG 3 cut(s) 1578, 2305, 2812
SfuI TTCGAA 1 cut(s) 3611
SmiMI CAYNNNNRTG 4 cut(s) 610, 1764, 2506, 3126
SmlI CTYRAG 7 cut(s) 1055, 1117, 1140, 1795, 2167, 2354, 3236
SmoI CTYRAG 7 cut(s) 1055, 1117, 1140, 1795, 2167, 2354, 3236
SphI GCATGC 2 cut(s) 1127, 1323
SsiI CCGC 6 cut(s) 346, 651, 1492, 3144, 3304, 3394
SspI AATATT 1 cut(s) 2570
SstI GAGCTC 2 cut(s) 1062, 1420
StyD4I CCNGG 8 cut(s) 203, 658, 1281, 1513, 2943, 2986, 3255, 3873
StyI CCWWGG 5 cut(s) 3269, 3695, 3740, 3970, 4006
TaiI ACGT 5 cut(s) 1034, 2962, 3510, 3670, 3915
TaqI TCGA 5 cut(s) 1613, 1697, 2562, 3611, 4014
TatI WGTACW 2 cut(s) 3346, 3758
TscAI CASTG 6 cut(s) 312, 612, 1009, 1990, 2821, 3552
TseFI GTSAC 4 cut(s) 996, 2606, 3104, 3503
TseI GCWGC 5 cut(s) 1049, 2121, 2163, 2671, 3944
Tsp45I GTSAC 4 cut(s) 996, 2606, 3104, 3503
TspGWI ACGGA 1 cut(s) 809
TspRI CASTG 6 cut(s) 312, 612, 1009, 1990, 2821, 3552
Tth111I GACNNNGTC 1 cut(s) 740
Van91I CCANNNNNTGG 1 cut(s) 4007
Vha464I CTTAAG 2 cut(s) 1117, 2354
VneI GTGCAC 1 cut(s) 603
XagI CCTNNNNNAGG 1 cut(s) 663
XapI RAATTY 9 cut(s) 1233, 1718, 1934, 2220, 2413, 2928, 3188, 3625, 3982
XbaI TCTAGA 2 cut(s) 797, 1180
XceI RCATGY 6 cut(s) 781, 1127, 1323, 1763, 1879, 3861
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmiI GTMKAC 4 cut(s) 1195, 1629, 2788, 3691
XmnI GAANNNNTTC 3 cut(s) 580, 789, 2271
ZraI GACGTC 1 cut(s) 3508
Zsp2I ATGCAT 3 cut(s) 1458, 1598, 3133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.