TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 7 - 51 | 1e-14 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 367 |
| AccI | GTMKAC | 1 cut(s) | 267 |
| AciI | CCGC | 2 cut(s) | 50, 367 |
| AclWI | GGATC | 1 cut(s) | 861 |
| AcsI | RAATTY | 4 cut(s) | 356, 479, 577, 780 |
| AcuI | CTGAAG | 4 cut(s) | 116, 299, 300, 482 |
| AcvI | CACGTG | 1 cut(s) | 397 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 56 |
| AflII | CTTAAG | 2 cut(s) | 740, 913 |
| AflIII | ACRYGT | 2 cut(s) | 394, 510 |
| AgsI | TTSAA | 5 cut(s) | 485, 530, 779, 812, 979 |
| AluBI | AGCT | 5 cut(s) | 83, 553, 695, 715, 847 |
| AluI | AGCT | 5 cut(s) | 83, 553, 695, 715, 847 |
| Alw21I | GWGCWC | 1 cut(s) | 85 |
| Alw26I | GTCTC | 1 cut(s) | 752 |
| AlwI | GGATC | 1 cut(s) | 861 |
| AoxI | GGCC | 1 cut(s) | 932 |
| ApeKI | GCWGC | 2 cut(s) | 756, 798 |
| ApoI | RAATTY | 4 cut(s) | 356, 479, 577, 780 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 774, 816 |
| AspS9I | GGNCC | 1 cut(s) | 933 |
| BanII | GRGCYC | 1 cut(s) | 85 |
| BbrPI | CACGTG | 1 cut(s) | 397 |
| BbsI | GAAGAC | 1 cut(s) | 955 |
| Bbv12I | GWGCWC | 1 cut(s) | 85 |
| BbvI | GCAGC | 2 cut(s) | 768, 785 |
| BccI | CCATC | 3 cut(s) | 344, 691, 860 |
| BceAI | ACGGC | 5 cut(s) | 228, 603, 720, 816, 967 |
| BclI | TGATCA | 1 cut(s) | 325 |
| BcoDI | GTCTC | 1 cut(s) | 752 |
| BfaI | CTAG | 2 cut(s) | 242, 863 |
| BfmI | CTRYAG | 1 cut(s) | 216 |
| BfrI | CTTAAG | 2 cut(s) | 740, 913 |
| BisI | GCNGC | 2 cut(s) | 757, 799 |
| BlsI | GCNGC | 2 cut(s) | 758, 800 |
| BmgT120I | GGNCC | 1 cut(s) | 933 |
| BmiI | GGNNCC | 1 cut(s) | 547 |
| BmrI | ACTGGG | 2 cut(s) | 94, 411 |
| BmsI | GCATC | 4 cut(s) | 108, 120, 934, 980 |
| BmuI | ACTGGG | 2 cut(s) | 94, 411 |
| BpiI | GAAGAC | 1 cut(s) | 955 |
| BpmI | CTGGAG | 1 cut(s) | 736 |
| BpuEI | CTTGAG | 2 cut(s) | 656, 787 |
| BsaAI | YACGTR | 1 cut(s) | 397 |
| BsaBI | GATNNNNATC | 1 cut(s) | 189 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 56 |
| Bse1I | ACTGG | 2 cut(s) | 100, 406 |
| Bse8I | GATNNNNATC | 1 cut(s) | 189 |
| BseGI | GGATG | 4 cut(s) | 458, 679, 683, 949 |
| BseJI | GATNNNNATC | 1 cut(s) | 189 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BseMII | CTCAG | 3 cut(s) | 175, 270, 807 |
| BseNI | ACTGG | 2 cut(s) | 100, 406 |
| BseXI | GCAGC | 2 cut(s) | 768, 785 |
| BshFI | GGCC | 1 cut(s) | 934 |
| BsiHKAI | GWGCWC | 1 cut(s) | 85 |
| BslFI | GGGAC | 3 cut(s) | 419, 441, 883 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BsmAI | GTCTC | 1 cut(s) | 752 |
| BsmFI | GGGAC | 3 cut(s) | 419, 441, 883 |
| BsmI | GAATGC | 1 cut(s) | 759 |
| BsnI | GGCC | 1 cut(s) | 934 |
| Bsp1286I | GDGCHC | 1 cut(s) | 85 |
| Bsp143I | GATC | 3 cut(s) | 190, 325, 853 |
| BspACI | CCGC | 2 cut(s) | 50, 367 |
| BspANI | GGCC | 1 cut(s) | 934 |
| BspCNI | CTCAG | 3 cut(s) | 174, 269, 806 |
| BspHI | TCATGA | 2 cut(s) | 322, 424 |
| BspLI | GGNNCC | 1 cut(s) | 547 |
| BspPI | GGATC | 1 cut(s) | 861 |
| BspTI | CTTAAG | 2 cut(s) | 740, 913 |
| BsrBI | CCGCTC | 1 cut(s) | 367 |
| BsrI | ACTGG | 2 cut(s) | 100, 406 |
| BssMI | GATC | 3 cut(s) | 190, 325, 853 |
| BssNAI | GTATAC | 1 cut(s) | 268 |
| Bst1107I | GTATAC | 1 cut(s) | 268 |
| Bst6I | CTCTTC | 1 cut(s) | 780 |
| BstAFI | CTTAAG | 2 cut(s) | 740, 913 |
| BstBAI | YACGTR | 1 cut(s) | 397 |
| BstDEI | CTNAG | 8 cut(s) | 161, 256, 305, 373, 621, 722, 793, 955 |
| BstF5I | GGATG | 4 cut(s) | 458, 679, 683, 949 |
| BstKTI | GATC | 3 cut(s) | 193, 328, 856 |
| BstMAI | GTCTC | 1 cut(s) | 752 |
| BstMBI | GATC | 3 cut(s) | 190, 325, 853 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 221 |
| BstNSI | RCATGY | 1 cut(s) | 514 |
| BstSFI | CTRYAG | 1 cut(s) | 216 |
| BstV1I | GCAGC | 2 cut(s) | 768, 785 |
| BstV2I | GAAGAC | 1 cut(s) | 955 |
| BstX2I | RGATCY | 1 cut(s) | 853 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 556 |
| BstYI | RGATCY | 1 cut(s) | 853 |
| BstZ17I | GTATAC | 1 cut(s) | 268 |
| BsuRI | GGCC | 1 cut(s) | 934 |
| BtsCI | GGATG | 4 cut(s) | 458, 679, 683, 949 |
| CciI | TCATGA | 2 cut(s) | 322, 424 |
| Cfr13I | GGNCC | 1 cut(s) | 933 |
| CviAII | CATG | 8 cut(s) | 122, 235, 295, 323, 425, 449, 511, 574 |
| DdeI | CTNAG | 8 cut(s) | 161, 256, 305, 373, 621, 722, 793, 955 |
| DpnI | GATC | 3 cut(s) | 192, 327, 855 |
| DpnII | GATC | 3 cut(s) | 190, 325, 853 |
| DraI | TTTAAA | 1 cut(s) | 478 |
| Eam1104I | CTCTTC | 1 cut(s) | 780 |
| EarI | CTCTTC | 1 cut(s) | 780 |
| Ecl136II | GAGCTC | 1 cut(s) | 83 |
| Eco24I | GRGCYC | 1 cut(s) | 85 |
| Eco53kI | GAGCTC | 1 cut(s) | 83 |
| Eco57I | CTGAAG | 4 cut(s) | 116, 299, 300, 482 |
| Eco72I | CACGTG | 1 cut(s) | 397 |
| EcoICRI | GAGCTC | 1 cut(s) | 83 |
| EcoT22I | ATGCAT | 3 cut(s) | 123, 575, 949 |
| EcoT38I | GRGCYC | 1 cut(s) | 85 |
| FaeI | CATG | 8 cut(s) | 125, 238, 298, 326, 428, 452, 514, 577 |
| FaqI | GGGAC | 3 cut(s) | 419, 441, 883 |
| FatI | CATG | 8 cut(s) | 121, 234, 294, 322, 424, 448, 510, 573 |
| FauNDI | CATATG | 1 cut(s) | 765 |
| FbaI | TGATCA | 1 cut(s) | 325 |
| FblI | GTMKAC | 1 cut(s) | 267 |
| Fnu4HI | GCNGC | 2 cut(s) | 757, 799 |
| FokI | GGATG | 4 cut(s) | 465, 666, 670, 956 |
| FriOI | GRGCYC | 1 cut(s) | 85 |
| Fsp4HI | GCNGC | 2 cut(s) | 757, 799 |
| FspBI | CTAG | 2 cut(s) | 242, 863 |
| GluI | GCNGC | 2 cut(s) | 757, 799 |
| GsuI | CTGGAG | 1 cut(s) | 736 |
| HaeIII | GGCC | 1 cut(s) | 934 |
| Hin1II | CATG | 8 cut(s) | 125, 238, 298, 326, 428, 452, 514, 577 |
| HincII | GTYRAC | 1 cut(s) | 201 |
| HindII | GTYRAC | 1 cut(s) | 201 |
| HindIII | AAGCTT | 1 cut(s) | 551 |
| HinfI | GANTC | 7 cut(s) | 319, 377, 493, 646, 718, 745, 770 |
| HpaI | GTTAAC | 1 cut(s) | 201 |
| Hpy166II | GTNNAC | 3 cut(s) | 59, 201, 268 |
| Hpy188I | TCNGA | 3 cut(s) | 259, 318, 673 |
| Hpy188III | TCNNGA | 9 cut(s) | 115, 134, 146, 323, 425, 635, 809, 821, 831 |
| Hpy8I | GTNNAC | 3 cut(s) | 59, 201, 268 |
| HpyAV | CCTTC | 2 cut(s) | 536, 835 |
| HpyCH4IV | ACGT | 2 cut(s) | 396, 564 |
| HpyCH4V | TGCA | 8 cut(s) | 121, 174, 387, 573, 660, 732, 880, 947 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 221 |
| HpyF3I | CTNAG | 8 cut(s) | 161, 256, 305, 373, 621, 722, 793, 955 |
| HpySE526I | ACGT | 2 cut(s) | 396, 564 |
| Hsp92II | CATG | 8 cut(s) | 125, 238, 298, 326, 428, 452, 514, 577 |
| Ksp22I | TGATCA | 1 cut(s) | 325 |
| KspAI | GTTAAC | 1 cut(s) | 201 |
| Kzo9I | GATC | 3 cut(s) | 190, 325, 853 |
| LmnI | GCTCC | 1 cut(s) | 844 |
| Lsp1109I | GCAGC | 2 cut(s) | 768, 785 |
| LweI | GCATC | 4 cut(s) | 108, 120, 934, 980 |
| MaeI | CTAG | 2 cut(s) | 242, 863 |
| MaeII | ACGT | 2 cut(s) | 396, 564 |
| MaeIII | GTNAC | 2 cut(s) | 397, 521 |
| MalI | GATC | 3 cut(s) | 192, 327, 855 |
| MbiI | CCGCTC | 1 cut(s) | 367 |
| MboI | GATC | 3 cut(s) | 190, 325, 853 |
| MboII | GAAGA | 6 cut(s) | 194, 488, 502, 767, 848, 955 |
| MflI | RGATCY | 1 cut(s) | 853 |
| MhlI | GDGCHC | 1 cut(s) | 85 |
| MluCI | AATT | 9 cut(s) | 175, 225, 334, 356, 479, 577, 582, 780, 881 |
| MlyI | GAGTC | 2 cut(s) | 371, 754 |
| MmeI | TCCRAC | 1 cut(s) | 276 |
| MnlI | CCTC | 5 cut(s) | 256, 291, 426, 667, 906 |
| Mph1103I | ATGCAT | 3 cut(s) | 123, 575, 949 |
| MroXI | GAANNNNTTC | 2 cut(s) | 774, 816 |
| MslI | CAYNNNNRTG | 3 cut(s) | 116, 764, 979 |
| MspA1I | CMGCKG | 1 cut(s) | 715 |
| MspCI | CTTAAG | 2 cut(s) | 740, 913 |
| Mva1269I | GAATGC | 1 cut(s) | 759 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 221 |
| NdeI | CATATG | 1 cut(s) | 765 |
| NdeII | GATC | 3 cut(s) | 190, 325, 853 |
| NlaIII | CATG | 8 cut(s) | 125, 238, 298, 326, 428, 452, 514, 577 |
| NlaIV | GGNNCC | 1 cut(s) | 547 |
| NmuCI | GTSAC | 2 cut(s) | 397, 521 |
| NsiI | ATGCAT | 3 cut(s) | 123, 575, 949 |
| NspI | RCATGY | 1 cut(s) | 514 |
| PagI | TCATGA | 2 cut(s) | 322, 424 |
| PciI | ACATGT | 1 cut(s) | 510 |
| PctI | GAATGC | 1 cut(s) | 759 |
| PdmI | GAANNNNTTC | 2 cut(s) | 774, 816 |
| PfeI | GAWTC | 5 cut(s) | 319, 493, 646, 718, 770 |
| PkrI | GCNGC | 2 cut(s) | 758, 800 |
| PleI | GAGTC | 2 cut(s) | 371, 753 |
| PmaCI | CACGTG | 1 cut(s) | 397 |
| PmlI | CACGTG | 1 cut(s) | 397 |
| PpsI | GAGTC | 2 cut(s) | 371, 753 |
| Ppu21I | YACGTR | 1 cut(s) | 397 |
| PscI | ACATGT | 1 cut(s) | 510 |
| Psp124BI | GAGCTC | 1 cut(s) | 85 |
| PspCI | CACGTG | 1 cut(s) | 397 |
| PspN4I | GGNNCC | 1 cut(s) | 547 |
| PspPI | GGNCC | 1 cut(s) | 933 |
| PsuI | RGATCY | 1 cut(s) | 853 |
| PvuII | CAGCTG | 1 cut(s) | 715 |
| RseI | CAYNNNNRTG | 3 cut(s) | 116, 764, 979 |
| SacI | GAGCTC | 1 cut(s) | 85 |
| SatI | GCNGC | 2 cut(s) | 757, 799 |
| Sau3AI | GATC | 3 cut(s) | 190, 325, 853 |
| Sau96I | GGNCC | 1 cut(s) | 933 |
| SchI | GAGTC | 2 cut(s) | 371, 754 |
| SduI | GDGCHC | 1 cut(s) | 85 |
| SfaNI | GCATC | 4 cut(s) | 108, 120, 934, 980 |
| SfcI | CTRYAG | 1 cut(s) | 216 |
| SmiI | ATTTAAAT | 1 cut(s) | 478 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 116, 764, 979 |
| SmlI | CTYRAG | 4 cut(s) | 635, 740, 802, 913 |
| SmoI | CTYRAG | 4 cut(s) | 635, 740, 802, 913 |
| Sse9I | AATT | 9 cut(s) | 175, 225, 334, 356, 479, 577, 582, 780, 881 |
| SsiI | CCGC | 2 cut(s) | 50, 367 |
| SspMI | CTAG | 2 cut(s) | 242, 863 |
| SstI | GAGCTC | 1 cut(s) | 85 |
| SwaI | ATTTAAAT | 1 cut(s) | 478 |
| TaiI | ACGT | 2 cut(s) | 399, 567 |
| TaqI | TCGA | 3 cut(s) | 114, 145, 859 |
| TasI | AATT | 9 cut(s) | 175, 225, 334, 356, 479, 577, 582, 780, 881 |
| TfiI | GAWTC | 5 cut(s) | 319, 493, 646, 718, 770 |
| TseFI | GTSAC | 2 cut(s) | 397, 521 |
| TseI | GCWGC | 2 cut(s) | 756, 798 |
| Tsp45I | GTSAC | 2 cut(s) | 397, 521 |
| TspDTI | ATGAA | 8 cut(s) | 17, 35, 195, 311, 590, 668, 752, 854 |
| Vha464I | CTTAAG | 2 cut(s) | 740, 913 |
| XapI | RAATTY | 4 cut(s) | 356, 479, 577, 780 |
| XceI | RCATGY | 1 cut(s) | 514 |
| XmiI | GTMKAC | 1 cut(s) | 267 |
| XmnI | GAANNNNTTC | 2 cut(s) | 774, 816 |
| XspI | CTAG | 2 cut(s) | 242, 863 |
| Zsp2I | ATGCAT | 3 cut(s) | 123, 575, 949 |