TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 184 | 3e-50 | TIR domain |
| TIR_2 | PF13676 | 21 - 118 | 2e-14 | TIR domain |
| NB-ARC | PF00931 | 213 - 366 | 5.7e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 436 - 505 | 3.8e-22 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 618 - 637 | 6e-07 | Leucine Rich Repeat |
| LRR_14 | PF23598 | 678 - 789 | 4.2e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 709 - 794 | 8.5e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 763 - 841 | 2.1e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 863 - 924 | 6.9e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 863 - 915 | 3e-06 | Leucine rich repeat |
| C-JID | PF20160 | 993 - 1144 | 5.7e-19 | C-JID domain |
| WRKY | PF03106 | 1276 - 1335 | 7e-24 | WRKY DNA -binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 989 |
| Acc16I | TGCGCA | 1 cut(s) | 2669 |
| Acc36I | ACCTGC | 1 cut(s) | 2701 |
| AccB1I | GGYRCC | 5 cut(s) | 264, 322, 2527, 3110, 3719 |
| AccI | GTMKAC | 1 cut(s) | 1641 |
| AccII | CGCG | 2 cut(s) | 555, 3650 |
| AciI | CCGC | 8 cut(s) | 6, 553, 3090, 3411, 3570, 3648, 3650, 3668 |
| AclWI | GGATC | 8 cut(s) | 544, 1292, 2419, 3600, 3613, 3867, 3880, 3924 |
| AcoI | YGGCCR | 5 cut(s) | 3, 106, 3832, 3853, 3930 |
| AcsI | RAATTY | 7 cut(s) | 922, 1043, 1260, 2407, 2991, 3778, 3787 |
| AcuI | CTGAAG | 6 cut(s) | 171, 1324, 2252, 3265, 3342, 3681 |
| AcyI | GRCGYC | 2 cut(s) | 504, 2528 |
| AdeI | CACNNNGTG | 1 cut(s) | 1016 |
| AfaI | GTAC | 7 cut(s) | 618, 786, 835, 1416, 3154, 3179, 3757 |
| AflII | CTTAAG | 3 cut(s) | 1958, 2135, 2168 |
| AflIII | ACRYGT | 2 cut(s) | 2476, 3243 |
| AjiI | CACGTC | 1 cut(s) | 1715 |
| AjnI | CCWGG | 5 cut(s) | 670, 1525, 2980, 3249, 3627 |
| Alw21I | GWGCWC | 3 cut(s) | 124, 1432, 2375 |
| Alw26I | GTCTC | 4 cut(s) | 562, 1675, 2222, 4018 |
| AlwI | GGATC | 8 cut(s) | 544, 1292, 2419, 3600, 3613, 3867, 3880, 3924 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1270 |
| Ama87I | CYCGRG | 2 cut(s) | 214, 696 |
| AoxI | GGCC | 7 cut(s) | 3, 106, 459, 3563, 3832, 3853, 3930 |
| ApeKI | GCWGC | 5 cut(s) | 35, 2665, 2696, 3040, 3536 |
| ApoI | RAATTY | 7 cut(s) | 922, 1043, 1260, 2407, 2991, 3778, 3787 |
| AseI | ATTAAT | 1 cut(s) | 1935 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 801, 2265, 3678 |
| AspLEI | GCGC | 4 cut(s) | 1536, 2530, 2670, 3774 |
| AspS9I | GGNCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| AsuC2I | CCSGG | 1 cut(s) | 2112 |
| AsuHPI | GGTGA | 3 cut(s) | 542, 3185, 3556 |
| AvaI | CYCGRG | 2 cut(s) | 214, 696 |
| AvaII | GGWCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| AxyI | CCTNAGG | 1 cut(s) | 838 |
| BaeGI | GKGCMC | 2 cut(s) | 327, 3115 |
| BalI | TGGCCA | 2 cut(s) | 3855, 3932 |
| BamHI | GGATCC | 2 cut(s) | 3605, 3872 |
| BanI | GGYRCC | 5 cut(s) | 264, 322, 2527, 3110, 3719 |
| BanII | GRGCYC | 2 cut(s) | 124, 1432 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 169, 201 |
| BbsI | GAAGAC | 3 cut(s) | 55, 2099, 2309 |
| Bbv12I | GWGCWC | 3 cut(s) | 124, 1432, 2375 |
| BbvI | GCAGC | 5 cut(s) | 47, 2652, 2708, 3052, 3548 |
| BceAI | ACGGC | 3 cut(s) | 1602, 3407, 3847 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3119, 3153, 3378, 3412 |
| BciT130I | CCWGG | 5 cut(s) | 672, 1527, 2982, 3251, 3629 |
| BciVI | GTATCC | 1 cut(s) | 3795 |
| BcnI | CCSGG | 1 cut(s) | 2112 |
| BcoDI | GTCTC | 4 cut(s) | 562, 1675, 2222, 4018 |
| BfaI | CTAG | 5 cut(s) | 452, 810, 996, 1229, 1322 |
| BfmI | CTRYAG | 5 cut(s) | 33, 115, 1590, 2299, 2694 |
| BfoI | RGCGCY | 1 cut(s) | 2531 |
| BfrI | CTTAAG | 3 cut(s) | 1958, 2135, 2168 |
| BfuAI | ACCTGC | 1 cut(s) | 2701 |
| BfuI | GTATCC | 1 cut(s) | 3795 |
| BglII | AGATCT | 3 cut(s) | 96, 1063, 2184 |
| BisI | GCNGC | 6 cut(s) | 6, 36, 2666, 2697, 3041, 3537 |
| BlsI | GCNGC | 6 cut(s) | 7, 37, 2667, 2698, 3042, 3538 |
| BmcAI | AGTACT | 1 cut(s) | 1416 |
| Bme1390I | CCNGG | 6 cut(s) | 672, 1527, 2112, 2982, 3251, 3629 |
| Bme18I | GGWCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| BmeT110I | CYCGRG | 2 cut(s) | 214, 696 |
| BmgBI | CACGTC | 1 cut(s) | 1715 |
| BmgT120I | GGNCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| BmrFI | CCNGG | 6 cut(s) | 672, 1527, 2112, 2982, 3251, 3629 |
| BmsI | GCATC | 7 cut(s) | 1585, 2785, 3112, 3408, 3468, 3890, 3960 |
| BpiI | GAAGAC | 3 cut(s) | 55, 2099, 2309 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1404, 1436 |
| BpmI | CTGGAG | 3 cut(s) | 2867, 3215, 4000 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2766 |
| BpuEI | CTTGAG | 4 cut(s) | 350, 1088, 1114, 1137 |
| BpuMI | CCSGG | 1 cut(s) | 2112 |
| Bsa29I | ATCGAT | 2 cut(s) | 153, 2255 |
| BsaAI | YACGTR | 1 cut(s) | 2477 |
| BsaBI | GATNNNNATC | 5 cut(s) | 1062, 1563, 2755, 3610, 3813 |
| BsaHI | GRCGYC | 2 cut(s) | 504, 2528 |
| BsaJI | CCNNGG | 6 cut(s) | 1526, 3250, 3263, 3627, 3648, 3663 |
| BsaWI | WCCGGW | 1 cut(s) | 563 |
| Bse118I | RCCGGY | 1 cut(s) | 3298 |
| Bse1I | ACTGG | 3 cut(s) | 1808, 3232, 3965 |
| Bse21I | CCTNAGG | 1 cut(s) | 838 |
| Bse3DI | GCAATG | 4 cut(s) | 600, 690, 2706, 3394 |
| Bse8I | GATNNNNATC | 5 cut(s) | 1062, 1563, 2755, 3610, 3813 |
| BseBI | CCWGG | 5 cut(s) | 672, 1527, 2982, 3251, 3629 |
| BseCI | ATCGAT | 2 cut(s) | 153, 2255 |
| BseDI | CCNNGG | 6 cut(s) | 1526, 3250, 3263, 3627, 3648, 3663 |
| BseGI | GGATG | 8 cut(s) | 447, 505, 560, 643, 1729, 1832, 2038, 2516 |
| BseJI | GATNNNNATC | 5 cut(s) | 1062, 1563, 2755, 3610, 3813 |
| BseMI | GCAATG | 4 cut(s) | 600, 690, 2706, 3394 |
| BseNI | ACTGG | 3 cut(s) | 1808, 3232, 3965 |
| BseSI | GKGCMC | 2 cut(s) | 327, 3115 |
| BseXI | GCAGC | 5 cut(s) | 47, 2652, 2708, 3052, 3548 |
| BseYI | CCCAGC | 1 cut(s) | 477 |
| BsgI | GTGCAG | 3 cut(s) | 452, 1043, 3059 |
| Bsh1236I | CGCG | 2 cut(s) | 555, 3650 |
| Bsh1285I | CGRYCG | 1 cut(s) | 46 |
| BshFI | GGCC | 7 cut(s) | 5, 108, 461, 3565, 3834, 3855, 3932 |
| BshNI | GGYRCC | 5 cut(s) | 264, 322, 2527, 3110, 3719 |
| BshVI | ATCGAT | 2 cut(s) | 153, 2255 |
| BsiEI | CGRYCG | 1 cut(s) | 46 |
| BsiHKAI | GWGCWC | 3 cut(s) | 124, 1432, 2375 |
| BsiHKCI | CYCGRG | 2 cut(s) | 214, 696 |
| BsiSI | CCGG | 3 cut(s) | 564, 2111, 3299 |
| BslFI | GGGAC | 2 cut(s) | 1778, 3610 |
| BsmAI | GTCTC | 4 cut(s) | 562, 1675, 2222, 4018 |
| BsmBI | CGTCTC | 2 cut(s) | 562, 4018 |
| BsmFI | GGGAC | 2 cut(s) | 1778, 3610 |
| BsmI | GAATGC | 1 cut(s) | 672 |
| BsnI | GGCC | 7 cut(s) | 5, 108, 461, 3565, 3834, 3855, 3932 |
| BsoBI | CYCGRG | 2 cut(s) | 214, 696 |
| Bsp1286I | GDGCHC | 5 cut(s) | 124, 327, 1432, 2375, 3115 |
| Bsp1407I | TGTACA | 1 cut(s) | 784 |
| Bsp19I | CCATGG | 1 cut(s) | 3263 |
| BspACI | CCGC | 8 cut(s) | 6, 553, 3090, 3411, 3570, 3648, 3650, 3668 |
| BspANI | GGCC | 7 cut(s) | 5, 108, 461, 3565, 3834, 3855, 3932 |
| BspDI | ATCGAT | 2 cut(s) | 153, 2255 |
| BspFNI | CGCG | 2 cut(s) | 555, 3650 |
| BspHI | TCATGA | 1 cut(s) | 3481 |
| BspMAI | CTGCAG | 3 cut(s) | 37, 2303, 2698 |
| BspMI | ACCTGC | 1 cut(s) | 2701 |
| BspPI | GGATC | 8 cut(s) | 544, 1292, 2419, 3600, 3613, 3867, 3880, 3924 |
| BspQI | GCTCTTC | 1 cut(s) | 2851 |
| BspT107I | GGYRCC | 5 cut(s) | 264, 322, 2527, 3110, 3719 |
| BspTI | CTTAAG | 3 cut(s) | 1958, 2135, 2168 |
| BsrDI | GCAATG | 4 cut(s) | 600, 690, 2706, 3394 |
| BsrFI | RCCGGY | 1 cut(s) | 3298 |
| BsrGI | TGTACA | 1 cut(s) | 784 |
| BsrI | ACTGG | 3 cut(s) | 1808, 3232, 3965 |
| BssAI | RCCGGY | 1 cut(s) | 3298 |
| BssECI | CCNNGG | 6 cut(s) | 1526, 3250, 3263, 3627, 3648, 3663 |
| BssNAI | GTATAC | 1 cut(s) | 1642 |
| BssNI | GRCGYC | 2 cut(s) | 504, 2528 |
| BssT1I | CCWWGG | 1 cut(s) | 3263 |
| Bst1107I | GTATAC | 1 cut(s) | 1642 |
| Bst2UI | CCWGG | 5 cut(s) | 672, 1527, 2982, 3251, 3629 |
| Bst4CI | ACNGT | 6 cut(s) | 176, 1896, 2250, 2824, 3382, 3709 |
| Bst6I | CTCTTC | 5 cut(s) | 420, 2851, 3512, 3570, 4029 |
| BstACI | GRCGYC | 2 cut(s) | 504, 2528 |
| BstAFI | CTTAAG | 3 cut(s) | 1958, 2135, 2168 |
| BstAUI | TGTACA | 1 cut(s) | 784 |
| BstBAI | YACGTR | 1 cut(s) | 2477 |
| BstC8I | GCNNGC | 5 cut(s) | 384, 1137, 1333, 2743, 3652 |
| BstDSI | CCRYGG | 2 cut(s) | 3263, 3648 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 675 |
| BstF5I | GGATG | 8 cut(s) | 447, 505, 560, 643, 1729, 1832, 2038, 2516 |
| BstFNI | CGCG | 2 cut(s) | 555, 3650 |
| BstH2I | RGCGCY | 1 cut(s) | 2531 |
| BstHHI | GCGC | 4 cut(s) | 1536, 2530, 2670, 3774 |
| BstMAI | GTCTC | 4 cut(s) | 562, 1675, 2222, 4018 |
| BstMCI | CGRYCG | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1078, 1465, 1595, 1655, 1684, 2272, 3268 |
| BstNI | CCWGG | 5 cut(s) | 672, 1527, 2982, 3251, 3629 |
| BstNSI | RCATGY | 7 cut(s) | 1212, 1335, 1873, 2745, 3247, 3944, 4005 |
| BstSCI | CCNGG | 6 cut(s) | 670, 1525, 2110, 2980, 3249, 3627 |
| BstSFI | CTRYAG | 5 cut(s) | 33, 115, 1590, 2299, 2694 |
| BstSLI | GKGCMC | 2 cut(s) | 327, 3115 |
| BstUI | CGCG | 2 cut(s) | 555, 3650 |
| BstV1I | GCAGC | 5 cut(s) | 47, 2652, 2708, 3052, 3548 |
| BstV2I | GAAGAC | 3 cut(s) | 55, 2099, 2309 |
| BstX2I | RGATCY | 5 cut(s) | 96, 1063, 2184, 3605, 3872 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1808, 3054 |
| BstYI | RGATCY | 5 cut(s) | 96, 1063, 2184, 3605, 3872 |
| BstZ17I | GTATAC | 1 cut(s) | 1642 |
| Bsu15I | ATCGAT | 2 cut(s) | 153, 2255 |
| Bsu36I | CCTNAGG | 1 cut(s) | 838 |
| BsuI | GTATCC | 1 cut(s) | 3795 |
| BsuRI | GGCC | 7 cut(s) | 5, 108, 461, 3565, 3834, 3855, 3932 |
| BsuTUI | ATCGAT | 2 cut(s) | 153, 2255 |
| BtgI | CCRYGG | 2 cut(s) | 3263, 3648 |
| BtgZI | GCGATG | 2 cut(s) | 96, 190 |
| BtrI | CACGTC | 1 cut(s) | 1715 |
| BtsCI | GGATG | 8 cut(s) | 447, 505, 560, 643, 1729, 1832, 2038, 2516 |
| BtsI | GCAGTG | 4 cut(s) | 962, 3496, 3507, 3560 |
| BveI | ACCTGC | 1 cut(s) | 2701 |
| Cac8I | GCNNGC | 5 cut(s) | 384, 1137, 1333, 2743, 3652 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1270 |
| CciI | TCATGA | 1 cut(s) | 3481 |
| CfoI | GCGC | 4 cut(s) | 1536, 2530, 2670, 3774 |
| Cfr10I | RCCGGY | 1 cut(s) | 3298 |
| Cfr13I | GGNCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| Cfr42I | CCGCGG | 1 cut(s) | 3651 |
| ClaI | ATCGAT | 2 cut(s) | 153, 2255 |
| CseI | GACGC | 3 cut(s) | 512, 544, 3114 |
| Csp6I | GTAC | 7 cut(s) | 617, 785, 834, 1415, 3153, 3178, 3756 |
| CviQI | GTAC | 7 cut(s) | 617, 785, 834, 1415, 3153, 3178, 3756 |
| DinI | GGCGCC | 1 cut(s) | 2529 |
| DraI | TTTAAA | 2 cut(s) | 2223, 2598 |
| DraIII | CACNNNGTG | 1 cut(s) | 1016 |
| EaeI | YGGCCR | 5 cut(s) | 3, 106, 3832, 3853, 3930 |
| Eam1104I | CTCTTC | 5 cut(s) | 420, 2851, 3512, 3570, 4029 |
| EarI | CTCTTC | 5 cut(s) | 420, 2851, 3512, 3570, 4029 |
| Ecl136II | GAGCTC | 2 cut(s) | 122, 1430 |
| Eco130I | CCWWGG | 1 cut(s) | 3263 |
| Eco147I | AGGCCT | 1 cut(s) | 461 |
| Eco24I | GRGCYC | 2 cut(s) | 124, 1432 |
| Eco32I | GATATC | 1 cut(s) | 3881 |
| Eco47I | GGWCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| Eco53kI | GAGCTC | 2 cut(s) | 122, 1430 |
| Eco57I | CTGAAG | 6 cut(s) | 171, 1324, 2252, 3265, 3342, 3681 |
| Eco81I | CCTNAGG | 1 cut(s) | 838 |
| Eco88I | CYCGRG | 2 cut(s) | 214, 696 |
| EcoICRI | GAGCTC | 2 cut(s) | 122, 1430 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 675 |
| EcoO109I | RGGNCCY | 4 cut(s) | 2203, 3624, 3642, 3660 |
| EcoRII | CCWGG | 5 cut(s) | 670, 1525, 2980, 3249, 3627 |
| EcoRV | GATATC | 1 cut(s) | 3881 |
| EcoT14I | CCWWGG | 1 cut(s) | 3263 |
| EcoT22I | ATGCAT | 1 cut(s) | 1470 |
| EcoT38I | GRGCYC | 2 cut(s) | 124, 1432 |
| EgeI | GGCGCC | 1 cut(s) | 2529 |
| EheI | GGCGCC | 1 cut(s) | 2529 |
| ErhI | CCWWGG | 1 cut(s) | 3263 |
| Esp3I | CGTCTC | 2 cut(s) | 562, 4018 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3011, 3043, 3666, 3698 |
| FaqI | GGGAC | 2 cut(s) | 1778, 3610 |
| FauI | CCCGC | 3 cut(s) | 3577, 3643, 3661 |
| FauNDI | CATATG | 1 cut(s) | 789 |
| FblI | GTMKAC | 1 cut(s) | 1641 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 36, 2666, 2697, 3041, 3537 |
| FokI | GGATG | 8 cut(s) | 454, 512, 547, 650, 1716, 1819, 2025, 2523 |
| FriOI | GRGCYC | 2 cut(s) | 124, 1432 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 36, 2666, 2697, 3041, 3537 |
| FspBI | CTAG | 5 cut(s) | 452, 810, 996, 1229, 1322 |
| FspI | TGCGCA | 1 cut(s) | 2669 |
| GlaI | GCGC | 4 cut(s) | 1535, 2529, 2669, 3773 |
| GluI | GCNGC | 6 cut(s) | 6, 36, 2666, 2697, 3041, 3537 |
| GsaI | CCCAGC | 1 cut(s) | 481 |
| GsuI | CTGGAG | 3 cut(s) | 2867, 3215, 4000 |
| HaeII | RGCGCY | 1 cut(s) | 2531 |
| HaeIII | GGCC | 7 cut(s) | 5, 108, 461, 3565, 3834, 3855, 3932 |
| HapII | CCGG | 3 cut(s) | 564, 2111, 3299 |
| HgaI | GACGC | 3 cut(s) | 512, 544, 3114 |
| HhaI | GCGC | 4 cut(s) | 1536, 2530, 2670, 3774 |
| Hin1I | GRCGYC | 2 cut(s) | 504, 2528 |
| Hin6I | GCGC | 4 cut(s) | 1534, 2528, 2668, 3772 |
| HinP1I | GCGC | 4 cut(s) | 1534, 2528, 2668, 3772 |
| HincII | GTYRAC | 1 cut(s) | 1926 |
| HindII | GTYRAC | 1 cut(s) | 1926 |
| HindIII | AAGCTT | 5 cut(s) | 384, 509, 1282, 1656, 2922 |
| HpaII | CCGG | 3 cut(s) | 564, 2111, 3299 |
| HphI | GGTGA | 3 cut(s) | 542, 3185, 3556 |
| Hpy166II | GTNNAC | 5 cut(s) | 834, 1575, 1642, 1926, 3585 |
| Hpy8I | GTNNAC | 5 cut(s) | 834, 1575, 1642, 1926, 3585 |
| Hpy99I | CGWCG | 6 cut(s) | 164, 293, 1509, 1990, 2718, 3393 |
| HpyCH4III | ACNGT | 6 cut(s) | 176, 1896, 2250, 2824, 3382, 3709 |
| HpyCH4IV | ACGT | 4 cut(s) | 1714, 2476, 3730, 3797 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1078, 1465, 1595, 1655, 1684, 2272, 3268 |
| HpySE526I | ACGT | 4 cut(s) | 1714, 2476, 3730, 3797 |
| Hsp92I | GRCGYC | 2 cut(s) | 504, 2528 |
| HspAI | GCGC | 4 cut(s) | 1534, 2528, 2668, 3772 |
| KasI | GGCGCC | 1 cut(s) | 2527 |
| KflI | GGGWCCC | 1 cut(s) | 3624 |
| KspI | CCGCGG | 1 cut(s) | 3651 |
| LguI | GCTCTTC | 1 cut(s) | 2851 |
| LmnI | GCTCC | 1 cut(s) | 1184 |
| Lsp1109I | GCAGC | 5 cut(s) | 47, 2652, 2708, 3052, 3548 |
| LweI | GCATC | 7 cut(s) | 1585, 2785, 3112, 3408, 3468, 3890, 3960 |
| MaeI | CTAG | 5 cut(s) | 452, 810, 996, 1229, 1322 |
| MaeII | ACGT | 4 cut(s) | 1714, 2476, 3730, 3797 |
| MaeIII | GTNAC | 9 cut(s) | 176, 1363, 1880, 1943, 2786, 2973, 3098, 3544, 3956 |
| MfeI | CAATTG | 1 cut(s) | 2235 |
| MflI | RGATCY | 5 cut(s) | 96, 1063, 2184, 3605, 3872 |
| MhlI | GDGCHC | 5 cut(s) | 124, 327, 1432, 2375, 3115 |
| MlsI | TGGCCA | 2 cut(s) | 3855, 3932 |
| MluNI | TGGCCA | 2 cut(s) | 3855, 3932 |
| Mly113I | GGCGCC | 1 cut(s) | 2528 |
| MlyI | GAGTC | 6 cut(s) | 206, 1287, 1888, 2086, 2113, 3363 |
| MmeI | TCCRAC | 5 cut(s) | 29, 183, 565, 1528, 3764 |
| Mox20I | TGGCCA | 2 cut(s) | 3855, 3932 |
| Mph1103I | ATGCAT | 1 cut(s) | 1470 |
| MroXI | GAANNNNTTC | 3 cut(s) | 801, 2265, 3678 |
| MscI | TGGCCA | 2 cut(s) | 3855, 3932 |
| MslI | CAYNNNNRTG | 7 cut(s) | 402, 1213, 1734, 1758, 1806, 2123, 3120 |
| Msp20I | TGGCCA | 2 cut(s) | 3855, 3932 |
| MspA1I | CMGCKG | 3 cut(s) | 38, 2887, 3650 |
| MspCI | CTTAAG | 3 cut(s) | 1958, 2135, 2168 |
| MspI | CCGG | 3 cut(s) | 564, 2111, 3299 |
| MspR9I | CCNGG | 6 cut(s) | 672, 1527, 2112, 2982, 3251, 3629 |
| MunI | CAATTG | 1 cut(s) | 2235 |
| Mva1269I | GAATGC | 1 cut(s) | 672 |
| MvaI | CCWGG | 5 cut(s) | 672, 1527, 2982, 3251, 3629 |
| MvnI | CGCG | 2 cut(s) | 555, 3650 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1078, 1465, 1595, 1655, 1684, 2272, 3268 |
| NarI | GGCGCC | 1 cut(s) | 2528 |
| NciI | CCSGG | 1 cut(s) | 2112 |
| NcoI | CCATGG | 1 cut(s) | 3263 |
| NdeI | CATATG | 1 cut(s) | 789 |
| NmeAIII | GCCGAG | 1 cut(s) | 3644 |
| NmuCI | GTSAC | 5 cut(s) | 1880, 1943, 2973, 3544, 3956 |
| NsbI | TGCGCA | 1 cut(s) | 2669 |
| NsiI | ATGCAT | 1 cut(s) | 1470 |
| NspI | RCATGY | 7 cut(s) | 1212, 1335, 1873, 2745, 3247, 3944, 4005 |
| PaeI | GCATGC | 2 cut(s) | 1335, 2745 |
| PaeR7I | CTCGAG | 2 cut(s) | 214, 696 |
| PagI | TCATGA | 1 cut(s) | 3481 |
| PceI | AGGCCT | 1 cut(s) | 461 |
| PciI | ACATGT | 1 cut(s) | 3243 |
| PciSI | GCTCTTC | 1 cut(s) | 2851 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 159, 2713 |
| PctI | GAATGC | 1 cut(s) | 672 |
| PdmI | GAANNNNTTC | 3 cut(s) | 801, 2265, 3678 |
| PflFI | GACNNNGTC | 1 cut(s) | 2712 |
| PfoI | TCCNGGA | 1 cut(s) | 2980 |
| PkrI | GCNGC | 6 cut(s) | 7, 37, 2667, 2698, 3042, 3538 |
| PleI | GAGTC | 6 cut(s) | 206, 1287, 1887, 2085, 2112, 3362 |
| PluTI | GGCGCC | 1 cut(s) | 2531 |
| PpsI | GAGTC | 6 cut(s) | 206, 1287, 1887, 2085, 2112, 3362 |
| Ppu21I | YACGTR | 1 cut(s) | 2477 |
| PpuMI | RGGWCCY | 4 cut(s) | 2203, 3624, 3642, 3660 |
| PscI | ACATGT | 1 cut(s) | 3243 |
| PshBI | ATTAAT | 1 cut(s) | 1935 |
| PsiI | TTATAA | 1 cut(s) | 989 |
| Psp124BI | GAGCTC | 2 cut(s) | 124, 1432 |
| Psp5II | RGGWCCY | 4 cut(s) | 2203, 3624, 3642, 3660 |
| Psp6I | CCWGG | 5 cut(s) | 670, 1525, 2980, 3249, 3627 |
| PspFI | CCCAGC | 1 cut(s) | 477 |
| PspGI | CCWGG | 5 cut(s) | 670, 1525, 2980, 3249, 3627 |
| PspPI | GGNCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| PspPPI | RGGWCCY | 4 cut(s) | 2203, 3624, 3642, 3660 |
| PspXI | VCTCGAGB | 2 cut(s) | 214, 696 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1356, 1388 |
| PstI | CTGCAG | 3 cut(s) | 37, 2303, 2698 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1270 |
| PsuI | RGATCY | 5 cut(s) | 96, 1063, 2184, 3605, 3872 |
| PsyI | GACNNNGTC | 1 cut(s) | 2712 |
| PvuII | CAGCTG | 2 cut(s) | 38, 2887 |
| RsaI | GTAC | 7 cut(s) | 618, 786, 835, 1416, 3154, 3179, 3757 |
| RsaNI | GTAC | 7 cut(s) | 617, 785, 834, 1415, 3153, 3178, 3756 |
| RseI | CAYNNNNRTG | 7 cut(s) | 402, 1213, 1734, 1758, 1806, 2123, 3120 |
| SacI | GAGCTC | 2 cut(s) | 124, 1432 |
| SacII | CCGCGG | 1 cut(s) | 3651 |
| SapI | GCTCTTC | 1 cut(s) | 2851 |
| SatI | GCNGC | 6 cut(s) | 6, 36, 2666, 2697, 3041, 3537 |
| Sau96I | GGNCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| ScaI | AGTACT | 1 cut(s) | 1416 |
| SchI | GAGTC | 6 cut(s) | 206, 1287, 1888, 2086, 2113, 3363 |
| ScrFI | CCNGG | 6 cut(s) | 672, 1527, 2112, 2982, 3251, 3629 |
| SduI | GDGCHC | 5 cut(s) | 124, 327, 1432, 2375, 3115 |
| SfaNI | GCATC | 7 cut(s) | 1585, 2785, 3112, 3408, 3468, 3890, 3960 |
| SfcI | CTRYAG | 5 cut(s) | 33, 115, 1590, 2299, 2694 |
| SfoI | GGCGCC | 1 cut(s) | 2529 |
| Sfr274I | CTCGAG | 2 cut(s) | 214, 696 |
| Sfr303I | CCGCGG | 1 cut(s) | 3651 |
| SgrBI | CCGCGG | 1 cut(s) | 3651 |
| SinI | GGWCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| SlaI | CTCGAG | 2 cut(s) | 214, 696 |
| SmiI | ATTTAAAT | 2 cut(s) | 2223, 2598 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 402, 1213, 1734, 1758, 1806, 2123, 3120 |
| SmlI | CTYRAG | 9 cut(s) | 214, 365, 696, 1067, 1129, 1152, 1958, 2135, 2168 |
| SmoI | CTYRAG | 9 cut(s) | 214, 365, 696, 1067, 1129, 1152, 1958, 2135, 2168 |
| SphI | GCATGC | 2 cut(s) | 1335, 2745 |
| SseBI | AGGCCT | 1 cut(s) | 461 |
| SsiI | CCGC | 8 cut(s) | 6, 553, 3090, 3411, 3570, 3648, 3650, 3668 |
| SspDI | GGCGCC | 1 cut(s) | 2527 |
| SspI | AATATT | 1 cut(s) | 660 |
| SspMI | CTAG | 5 cut(s) | 452, 810, 996, 1229, 1322 |
| SstI | GAGCTC | 2 cut(s) | 124, 1432 |
| StuI | AGGCCT | 1 cut(s) | 461 |
| StyD4I | CCNGG | 6 cut(s) | 670, 1525, 2110, 2980, 3249, 3627 |
| StyI | CCWWGG | 1 cut(s) | 3263 |
| SwaI | ATTTAAAT | 2 cut(s) | 2223, 2598 |
| TaaI | ACNGT | 6 cut(s) | 176, 1896, 2250, 2824, 3382, 3709 |
| TaiI | ACGT | 4 cut(s) | 1717, 2479, 3733, 3800 |
| TaqII | GACCGA | 1 cut(s) | 32 |
| TatI | WGTACW | 4 cut(s) | 616, 784, 1414, 3177 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TseFI | GTSAC | 5 cut(s) | 1880, 1943, 2973, 3544, 3956 |
| TseI | GCWGC | 5 cut(s) | 35, 2665, 2696, 3040, 3536 |
| Tsp45I | GTSAC | 5 cut(s) | 1880, 1943, 2973, 3544, 3956 |
| TspGWI | ACGGA | 2 cut(s) | 214, 2031 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2712 |
| Vha464I | CTTAAG | 3 cut(s) | 1958, 2135, 2168 |
| VpaK11BI | GGWCC | 5 cut(s) | 2203, 3624, 3642, 3660, 3737 |
| VspI | ATTAAT | 1 cut(s) | 1935 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 675 |
| XapI | RAATTY | 7 cut(s) | 922, 1043, 1260, 2407, 2991, 3778, 3787 |
| XbaI | TCTAGA | 2 cut(s) | 809, 1321 |
| XceI | RCATGY | 7 cut(s) | 1212, 1335, 1873, 2745, 3247, 3944, 4005 |
| XhoI | CTCGAG | 2 cut(s) | 214, 696 |
| XmiI | GTMKAC | 1 cut(s) | 1641 |
| XmnI | GAANNNNTTC | 3 cut(s) | 801, 2265, 3678 |
| XspI | CTAG | 5 cut(s) | 452, 810, 996, 1229, 1322 |
| ZrmI | AGTACT | 1 cut(s) | 1416 |
| Zsp2I | ATGCAT | 1 cut(s) | 1470 |