TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 30 - 192 | 8.9e-56 | TIR domain |
| TIR_2 | PF13676 | 32 - 128 | 6e-15 | TIR domain |
| NB-ARC | PF00931 | 215 - 375 | 4.5e-23 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 446 - 516 | 3.6e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_RPS2 | PF23247 | 615 - 743 | 6.5e-06 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_EndoS | PF23952 | 616 - 697 | 5.5e-06 | Endo-beta-N-acetylglucosaminidase EndoS LRR domain |
| LRR_4 | PF12799 | 704 - 747 | 1.6e-06 | Leucine Rich repeats (2 copies) |
| LRR_R13L1-DRL21 | PF25019 | 722 - 783 | 5.4e-06 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 739 - 871 | 7.1e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 842 - 926 | 8.5e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 923 - 997 | 2.6e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 938 - 1013 | 6e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 988 - 1068 | 5e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 1009 - 1084 | 3.6e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 1064 - 1139 | 1.5e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 1080 - 1155 | 3.3e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 1220 - 1293 | 4.8e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 1292 - 1352 | 8.3e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 1346 - 1509 | 7.2e-17 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 890 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 4101 |
| AccB1I | GGYRCC | 2 cut(s) | 407, 4583 |
| AccBSI | CCGCTC | 1 cut(s) | 4414 |
| AccI | GTMKAC | 3 cut(s) | 149, 634, 1059 |
| AccII | CGCG | 1 cut(s) | 4594 |
| AccIII | TCCGGA | 1 cut(s) | 4522 |
| AciI | CCGC | 7 cut(s) | 1166, 4414, 4495, 4551, 4587, 4592, 4594 |
| AclWI | GGATC | 8 cut(s) | 147, 374, 387, 2904, 3117, 3330, 3543, 3966 |
| AcuI | CTGAAG | 1 cut(s) | 166 |
| AcyI | GRCGYC | 1 cut(s) | 408 |
| AdeI | CACNNNGTG | 1 cut(s) | 1163 |
| AfaI | GTAC | 5 cut(s) | 393, 527, 1170, 1624, 1936 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 297, 529, 1656, 2658, 4593 |
| AflII | CTTAAG | 1 cut(s) | 479 |
| AflIII | ACRYGT | 1 cut(s) | 1913 |
| AgeI | ACCGGT | 1 cut(s) | 361 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 353, 641 |
| AhlI | ACTAGT | 1 cut(s) | 4264 |
| AjiI | CACGTC | 2 cut(s) | 937, 1163 |
| AjnI | CCWGG | 2 cut(s) | 694, 1146 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2598, 2630 |
| Alw21I | GWGCWC | 1 cut(s) | 1851 |
| AlwI | GGATC | 8 cut(s) | 147, 374, 387, 2904, 3117, 3330, 3543, 3966 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4373 |
| Ama87I | CYCGRG | 2 cut(s) | 991, 1559 |
| Aor13HI | TCCGGA | 1 cut(s) | 4522 |
| AoxI | GGCC | 5 cut(s) | 520, 692, 799, 988, 1183 |
| AsiGI | ACCGGT | 1 cut(s) | 361 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1115, 1344 |
| AspLEI | GCGC | 1 cut(s) | 410 |
| AspS9I | GGNCC | 5 cut(s) | 520, 692, 989, 1274, 2683 |
| AsuC2I | CCSGG | 4 cut(s) | 992, 993, 1560, 1561 |
| AsuHPI | GGTGA | 9 cut(s) | 62, 213, 428, 1385, 1444, 1539, 4262, 4453, 4598 |
| AvaI | CYCGRG | 2 cut(s) | 991, 1559 |
| AvaII | GGWCC | 2 cut(s) | 1274, 2683 |
| AxyI | CCTNAGG | 1 cut(s) | 1278 |
| BamHI | GGATCC | 1 cut(s) | 379 |
| BanI | GGYRCC | 2 cut(s) | 407, 4583 |
| BanII | GRGCYC | 2 cut(s) | 1214, 1851 |
| BbsI | GAAGAC | 4 cut(s) | 88, 262, 476, 4439 |
| Bbv12I | GWGCWC | 1 cut(s) | 1851 |
| BceAI | ACGGC | 1 cut(s) | 4597 |
| BciT130I | CCWGG | 2 cut(s) | 696, 1148 |
| BciVI | GTATCC | 2 cut(s) | 112, 2362 |
| BclI | TGATCA | 5 cut(s) | 67, 871, 1039, 1084, 1756 |
| BcnI | CCSGG | 4 cut(s) | 992, 993, 1560, 1561 |
| BcuI | ACTAGT | 1 cut(s) | 4264 |
| BfaI | CTAG | 5 cut(s) | 803, 948, 1322, 1403, 4265 |
| BfmI | CTRYAG | 1 cut(s) | 2532 |
| BfoI | RGCGCY | 1 cut(s) | 411 |
| BfrI | CTTAAG | 1 cut(s) | 479 |
| BfuI | GTATCC | 2 cut(s) | 112, 2362 |
| BglII | AGATCT | 1 cut(s) | 785 |
| Bme1390I | CCNGG | 6 cut(s) | 696, 992, 993, 1148, 1560, 1561 |
| Bme18I | GGWCC | 2 cut(s) | 1274, 2683 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 353, 641 |
| BmeT110I | CYCGRG | 2 cut(s) | 991, 1559 |
| BmgBI | CACGTC | 2 cut(s) | 937, 1163 |
| BmgT120I | GGNCC | 5 cut(s) | 520, 692, 989, 1274, 2683 |
| BmiI | GGNNCC | 7 cut(s) | 381, 409, 693, 2436, 4238, 4585, 4643 |
| BmrFI | CCNGG | 6 cut(s) | 696, 992, 993, 1148, 1560, 1561 |
| BoxI | GACNNNNGTC | 1 cut(s) | 939 |
| BpiI | GAAGAC | 4 cut(s) | 88, 262, 476, 4439 |
| BpmI | CTGGAG | 1 cut(s) | 1767 |
| BpuMI | CCSGG | 4 cut(s) | 992, 993, 1560, 1561 |
| BsaAI | YACGTR | 2 cut(s) | 2135, 2342 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1083, 1755 |
| BsaHI | GRCGYC | 1 cut(s) | 408 |
| BsaI | GGTCTC | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 6 cut(s) | 991, 1180, 1559, 1655, 4513, 4592 |
| BsaWI | WCCGGW | 2 cut(s) | 361, 4522 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 509, 539 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 297, 529, 1656, 2658, 4593 |
| Bse118I | RCCGGY | 4 cut(s) | 223, 361, 522, 4608 |
| Bse21I | CCTNAGG | 1 cut(s) | 1278 |
| Bse3DI | GCAATG | 1 cut(s) | 1814 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1083, 1755 |
| BseAI | TCCGGA | 1 cut(s) | 4522 |
| BseBI | CCWGG | 2 cut(s) | 696, 1148 |
| BseDI | CCNNGG | 6 cut(s) | 991, 1180, 1559, 1655, 4513, 4592 |
| BseJI | GATNNNNATC | 2 cut(s) | 1083, 1755 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 297, 529, 1656, 2658, 4593 |
| BseMI | GCAATG | 1 cut(s) | 1814 |
| BseMII | CTCAG | 4 cut(s) | 92, 176, 399, 1292 |
| BseRI | GAGGAG | 3 cut(s) | 222, 260, 1253 |
| BseYI | CCCAGC | 1 cut(s) | 4398 |
| BsgI | GTGCAG | 8 cut(s) | 2953, 3166, 3379, 3592, 3802, 4015, 4228, 4375 |
| Bsh1236I | CGCG | 1 cut(s) | 4594 |
| BshFI | GGCC | 5 cut(s) | 522, 694, 801, 990, 1185 |
| BshNI | GGYRCC | 2 cut(s) | 407, 4583 |
| BshTI | ACCGGT | 1 cut(s) | 361 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1851 |
| BsiHKCI | CYCGRG | 2 cut(s) | 991, 1559 |
| BsiSI | CCGG | 7 cut(s) | 224, 362, 523, 992, 1560, 4523, 4609 |
| BslFI | GGGAC | 2 cut(s) | 857, 1902 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 297, 529, 1656, 2658, 4593 |
| BsmBI | CGTCTC | 2 cut(s) | 4087, 4572 |
| BsmFI | GGGAC | 2 cut(s) | 857, 1902 |
| BsmI | GAATGC | 7 cut(s) | 335, 906, 1115, 1117, 1641, 1687, 4259 |
| BsnI | GGCC | 5 cut(s) | 522, 694, 801, 990, 1185 |
| Bso31I | GGTCTC | 1 cut(s) | 170 |
| BsoBI | CYCGRG | 2 cut(s) | 991, 1559 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1214, 1851 |
| Bsp13I | TCCGGA | 1 cut(s) | 4522 |
| Bsp1407I | TGTACA | 1 cut(s) | 1934 |
| Bsp19I | CCATGG | 1 cut(s) | 1655 |
| BspACI | CCGC | 7 cut(s) | 1166, 4414, 4495, 4551, 4587, 4592, 4594 |
| BspANI | GGCC | 5 cut(s) | 522, 694, 801, 990, 1185 |
| BspCNI | CTCAG | 4 cut(s) | 93, 175, 398, 1291 |
| BspEI | TCCGGA | 1 cut(s) | 4522 |
| BspFNI | CGCG | 1 cut(s) | 4594 |
| BspHI | TCATGA | 1 cut(s) | 4383 |
| BspLI | GGNNCC | 7 cut(s) | 381, 409, 693, 2436, 4238, 4585, 4643 |
| BspPI | GGATC | 8 cut(s) | 147, 374, 387, 2904, 3117, 3330, 3543, 3966 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspT107I | GGYRCC | 2 cut(s) | 407, 4583 |
| BspTI | CTTAAG | 1 cut(s) | 479 |
| BspTNI | GGTCTC | 1 cut(s) | 170 |
| BsrBI | CCGCTC | 1 cut(s) | 4414 |
| BsrDI | GCAATG | 1 cut(s) | 1814 |
| BsrFI | RCCGGY | 4 cut(s) | 223, 361, 522, 4608 |
| BsrGI | TGTACA | 1 cut(s) | 1934 |
| BssAI | RCCGGY | 4 cut(s) | 223, 361, 522, 4608 |
| BssECI | CCNNGG | 6 cut(s) | 991, 1180, 1559, 1655, 4513, 4592 |
| BssNAI | GTATAC | 2 cut(s) | 150, 1060 |
| BssNI | GRCGYC | 1 cut(s) | 408 |
| BssT1I | CCWWGG | 2 cut(s) | 1180, 1655 |
| Bst1107I | GTATAC | 2 cut(s) | 150, 1060 |
| Bst2UI | CCWGG | 2 cut(s) | 696, 1148 |
| Bst6I | CTCTTC | 5 cut(s) | 199, 234, 2583, 3732, 4158 |
| BstACI | GRCGYC | 1 cut(s) | 408 |
| BstAFI | CTTAAG | 1 cut(s) | 479 |
| BstAUI | TGTACA | 1 cut(s) | 1934 |
| BstBAI | YACGTR | 2 cut(s) | 2135, 2342 |
| BstC8I | GCNNGC | 6 cut(s) | 1360, 1380, 1411, 1794, 2561, 4456 |
| BstDSI | CCRYGG | 2 cut(s) | 1655, 4592 |
| BstFNI | CGCG | 1 cut(s) | 4594 |
| BstH2I | RGCGCY | 1 cut(s) | 411 |
| BstHHI | GCGC | 1 cut(s) | 410 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1789, 2461, 2668, 2756, 4492 |
| BstNI | CCWGG | 2 cut(s) | 696, 1148 |
| BstNSI | RCATGY | 4 cut(s) | 1142, 1382, 1800, 1917 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 939 |
| BstSCI | CCNGG | 6 cut(s) | 694, 990, 991, 1146, 1558, 1559 |
| BstSFI | CTRYAG | 1 cut(s) | 2532 |
| BstUI | CGCG | 1 cut(s) | 4594 |
| BstV2I | GAAGAC | 4 cut(s) | 88, 262, 476, 4439 |
| BstX2I | RGATCY | 7 cut(s) | 379, 785, 2896, 3109, 3322, 3535, 3958 |
| BstYI | RGATCY | 7 cut(s) | 379, 785, 2896, 3109, 3322, 3535, 3958 |
| BstZ17I | GTATAC | 2 cut(s) | 150, 1060 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1278 |
| BsuI | GTATCC | 2 cut(s) | 112, 2362 |
| BsuRI | GGCC | 5 cut(s) | 522, 694, 801, 990, 1185 |
| BtgI | CCRYGG | 2 cut(s) | 1655, 4592 |
| BtrI | CACGTC | 2 cut(s) | 937, 1163 |
| BtsI | GCAGTG | 7 cut(s) | 2845, 3058, 3271, 3484, 3694, 3907, 4120 |
| BtsIMutI | CAGTG | 7 cut(s) | 2845, 3058, 3271, 3484, 3694, 3907, 4120 |
| Cac8I | GCNNGC | 6 cut(s) | 1360, 1380, 1411, 1794, 2561, 4456 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4373 |
| CciI | TCATGA | 1 cut(s) | 4383 |
| CfoI | GCGC | 1 cut(s) | 410 |
| Cfr10I | RCCGGY | 4 cut(s) | 223, 361, 522, 4608 |
| Cfr13I | GGNCC | 5 cut(s) | 520, 692, 989, 1274, 2683 |
| Cfr42I | CCGCGG | 1 cut(s) | 4595 |
| Cfr9I | CCCGGG | 2 cut(s) | 991, 1559 |
| CseI | GACGC | 1 cut(s) | 428 |
| Csp6I | GTAC | 5 cut(s) | 392, 526, 1169, 1623, 1935 |
| CspAI | ACCGGT | 1 cut(s) | 361 |
| CviQI | GTAC | 5 cut(s) | 392, 526, 1169, 1623, 1935 |
| DinI | GGCGCC | 1 cut(s) | 409 |
| DraI | TTTAAA | 2 cut(s) | 1335, 1369 |
| DraIII | CACNNNGTG | 1 cut(s) | 1163 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 4101 |
| DriI | GACNNNNNGTC | 2 cut(s) | 353, 641 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 4101 |
| Eam1104I | CTCTTC | 5 cut(s) | 199, 234, 2583, 3732, 4158 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 353, 641 |
| EarI | CTCTTC | 5 cut(s) | 199, 234, 2583, 3732, 4158 |
| Ecl136II | GAGCTC | 1 cut(s) | 1849 |
| Eco130I | CCWWGG | 2 cut(s) | 1180, 1655 |
| Eco147I | AGGCCT | 1 cut(s) | 1185 |
| Eco24I | GRGCYC | 2 cut(s) | 1214, 1851 |
| Eco31I | GGTCTC | 1 cut(s) | 170 |
| Eco47I | GGWCC | 2 cut(s) | 1274, 2683 |
| Eco53kI | GAGCTC | 1 cut(s) | 1849 |
| Eco57I | CTGAAG | 1 cut(s) | 166 |
| Eco81I | CCTNAGG | 1 cut(s) | 1278 |
| Eco88I | CYCGRG | 2 cut(s) | 991, 1559 |
| EcoICRI | GAGCTC | 1 cut(s) | 1849 |
| EcoO109I | RGGNCCY | 2 cut(s) | 692, 1274 |
| EcoRI | GAATTC | 2 cut(s) | 1002, 4518 |
| EcoRII | CCWGG | 2 cut(s) | 694, 1146 |
| EcoT14I | CCWWGG | 2 cut(s) | 1180, 1655 |
| EcoT22I | ATGCAT | 3 cut(s) | 1117, 1144, 1503 |
| EcoT38I | GRGCYC | 2 cut(s) | 1214, 1851 |
| EgeI | GGCGCC | 1 cut(s) | 409 |
| EheI | GGCGCC | 1 cut(s) | 409 |
| ErhI | CCWWGG | 2 cut(s) | 1180, 1655 |
| Esp3I | CGTCTC | 2 cut(s) | 4087, 4572 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 807, 839, 2611, 2643 |
| FaqI | GGGAC | 2 cut(s) | 857, 1902 |
| FauI | CCCGC | 1 cut(s) | 4488 |
| FauNDI | CATATG | 1 cut(s) | 686 |
| FbaI | TGATCA | 5 cut(s) | 67, 871, 1039, 1084, 1756 |
| FblI | GTMKAC | 3 cut(s) | 149, 634, 1059 |
| FriOI | GRGCYC | 2 cut(s) | 1214, 1851 |
| FspBI | CTAG | 5 cut(s) | 803, 948, 1322, 1403, 4265 |
| GlaI | GCGC | 1 cut(s) | 409 |
| GsaI | CCCAGC | 1 cut(s) | 4402 |
| GsuI | CTGGAG | 1 cut(s) | 1767 |
| HaeII | RGCGCY | 1 cut(s) | 411 |
| HaeIII | GGCC | 5 cut(s) | 522, 694, 801, 990, 1185 |
| HapII | CCGG | 7 cut(s) | 224, 362, 523, 992, 1560, 4523, 4609 |
| HgaI | GACGC | 1 cut(s) | 428 |
| HhaI | GCGC | 1 cut(s) | 410 |
| Hin1I | GRCGYC | 1 cut(s) | 408 |
| Hin6I | GCGC | 1 cut(s) | 408 |
| HinP1I | GCGC | 1 cut(s) | 408 |
| HincII | GTYRAC | 4 cut(s) | 646, 2482, 3504, 3927 |
| HindII | GTYRAC | 4 cut(s) | 646, 2482, 3504, 3927 |
| HindIII | AAGCTT | 6 cut(s) | 197, 1089, 1407, 1690, 2462, 2561 |
| HpaII | CCGG | 7 cut(s) | 224, 362, 523, 992, 1560, 4523, 4609 |
| HphI | GGTGA | 9 cut(s) | 62, 213, 428, 1385, 1444, 1539, 4262, 4453, 4598 |
| Hpy166II | GTNNAC | 8 cut(s) | 150, 580, 635, 646, 1060, 2482, 3504, 3927 |
| Hpy8I | GTNNAC | 8 cut(s) | 150, 580, 635, 646, 1060, 2482, 3504, 3927 |
| Hpy99I | CGWCG | 1 cut(s) | 1164 |
| HpyAV | CCTTC | 7 cut(s) | 190, 421, 594, 850, 1196, 3677, 3890 |
| HpyCH4IV | ACGT | 8 cut(s) | 600, 936, 1162, 1602, 1891, 2134, 2341, 2783 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1789, 2461, 2668, 2756, 4492 |
| HpySE526I | ACGT | 8 cut(s) | 600, 936, 1162, 1602, 1891, 2134, 2341, 2783 |
| Hsp92I | GRCGYC | 1 cut(s) | 408 |
| HspAI | GCGC | 1 cut(s) | 408 |
| KasI | GGCGCC | 1 cut(s) | 407 |
| Kpn2I | TCCGGA | 1 cut(s) | 4522 |
| Ksp22I | TGATCA | 5 cut(s) | 67, 871, 1039, 1084, 1756 |
| KspI | CCGCGG | 1 cut(s) | 4595 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LmnI | GCTCC | 2 cut(s) | 1846, 4525 |
| MaeI | CTAG | 5 cut(s) | 803, 948, 1322, 1403, 4265 |
| MaeII | ACGT | 8 cut(s) | 600, 936, 1162, 1602, 1891, 2134, 2341, 2783 |
| MbiI | CCGCTC | 1 cut(s) | 4414 |
| MfeI | CAATTG | 7 cut(s) | 240, 717, 2865, 3078, 3291, 3714, 4140 |
| MflI | RGATCY | 7 cut(s) | 379, 785, 2896, 3109, 3322, 3535, 3958 |
| MhlI | GDGCHC | 2 cut(s) | 1214, 1851 |
| Mly113I | GGCGCC | 1 cut(s) | 408 |
| MmeI | TCCRAC | 4 cut(s) | 2382, 2428, 2661, 4301 |
| Mph1103I | ATGCAT | 3 cut(s) | 1117, 1144, 1503 |
| MroI | TCCGGA | 1 cut(s) | 4522 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1115, 1344 |
| MslI | CAYNNNNRTG | 1 cut(s) | 615 |
| MspA1I | CMGCKG | 1 cut(s) | 4594 |
| MspCI | CTTAAG | 1 cut(s) | 479 |
| MspI | CCGG | 7 cut(s) | 224, 362, 523, 992, 1560, 4523, 4609 |
| MspR9I | CCNGG | 6 cut(s) | 696, 992, 993, 1148, 1560, 1561 |
| MunI | CAATTG | 7 cut(s) | 240, 717, 2865, 3078, 3291, 3714, 4140 |
| Mva1269I | GAATGC | 7 cut(s) | 335, 906, 1115, 1117, 1641, 1687, 4259 |
| MvaI | CCWGG | 2 cut(s) | 696, 1148 |
| MvnI | CGCG | 1 cut(s) | 4594 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1789, 2461, 2668, 2756, 4492 |
| NarI | GGCGCC | 1 cut(s) | 408 |
| NciI | CCSGG | 4 cut(s) | 992, 993, 1560, 1561 |
| NcoI | CCATGG | 1 cut(s) | 1655 |
| NdeI | CATATG | 1 cut(s) | 686 |
| NlaIV | GGNNCC | 7 cut(s) | 381, 409, 693, 2436, 4238, 4585, 4643 |
| NmuCI | GTSAC | 9 cut(s) | 416, 1545, 2135, 2840, 3053, 3266, 3689, 3902, 4115 |
| NsiI | ATGCAT | 3 cut(s) | 1117, 1144, 1503 |
| NspI | RCATGY | 4 cut(s) | 1142, 1382, 1800, 1917 |
| PaeI | GCATGC | 1 cut(s) | 1382 |
| PagI | TCATGA | 1 cut(s) | 4383 |
| PceI | AGGCCT | 1 cut(s) | 1185 |
| PciI | ACATGT | 1 cut(s) | 1913 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3353 |
| PctI | GAATGC | 7 cut(s) | 335, 906, 1115, 1117, 1641, 1687, 4259 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1115, 1344 |
| PflFI | GACNNNGTC | 1 cut(s) | 4101 |
| PinAI | ACCGGT | 1 cut(s) | 361 |
| PluTI | GGCGCC | 1 cut(s) | 411 |
| Ppu21I | YACGTR | 2 cut(s) | 2135, 2342 |
| PpuMI | RGGWCCY | 1 cut(s) | 1274 |
| PscI | ACATGT | 1 cut(s) | 1913 |
| PshAI | GACNNNNGTC | 1 cut(s) | 939 |
| PsiI | TTATAA | 1 cut(s) | 890 |
| Psp124BI | GAGCTC | 1 cut(s) | 1851 |
| Psp5II | RGGWCCY | 1 cut(s) | 1274 |
| Psp6I | CCWGG | 2 cut(s) | 694, 1146 |
| PspFI | CCCAGC | 1 cut(s) | 4398 |
| PspGI | CCWGG | 2 cut(s) | 694, 1146 |
| PspN4I | GGNNCC | 7 cut(s) | 381, 409, 693, 2436, 4238, 4585, 4643 |
| PspPI | GGNCC | 5 cut(s) | 520, 692, 989, 1274, 2683 |
| PspPPI | RGGWCCY | 1 cut(s) | 1274 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4373 |
| PsuI | RGATCY | 7 cut(s) | 379, 785, 2896, 3109, 3322, 3535, 3958 |
| PsyI | GACNNNGTC | 1 cut(s) | 4101 |
| RsaI | GTAC | 5 cut(s) | 393, 527, 1170, 1624, 1936 |
| RsaNI | GTAC | 5 cut(s) | 392, 526, 1169, 1623, 1935 |
| RseI | CAYNNNNRTG | 1 cut(s) | 615 |
| SacI | GAGCTC | 1 cut(s) | 1851 |
| SacII | CCGCGG | 1 cut(s) | 4595 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| Sau96I | GGNCC | 5 cut(s) | 520, 692, 989, 1274, 2683 |
| ScrFI | CCNGG | 6 cut(s) | 696, 992, 993, 1148, 1560, 1561 |
| SduI | GDGCHC | 2 cut(s) | 1214, 1851 |
| SfcI | CTRYAG | 1 cut(s) | 2532 |
| SfoI | GGCGCC | 1 cut(s) | 409 |
| Sfr303I | CCGCGG | 1 cut(s) | 4595 |
| SgrBI | CCGCGG | 1 cut(s) | 4595 |
| SinI | GGWCC | 2 cut(s) | 1274, 2683 |
| SmaI | CCCGGG | 2 cut(s) | 993, 1561 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 615 |
| SpeI | ACTAGT | 1 cut(s) | 4264 |
| SphI | GCATGC | 1 cut(s) | 1382 |
| SrfI | GCCCGGGC | 1 cut(s) | 993 |
| SseBI | AGGCCT | 1 cut(s) | 1185 |
| SsiI | CCGC | 7 cut(s) | 1166, 4414, 4495, 4551, 4587, 4592, 4594 |
| SspDI | GGCGCC | 1 cut(s) | 407 |
| SspI | AATATT | 6 cut(s) | 2725, 2891, 3104, 3317, 3530, 3953 |
| SspMI | CTAG | 5 cut(s) | 803, 948, 1322, 1403, 4265 |
| SstI | GAGCTC | 1 cut(s) | 1851 |
| StuI | AGGCCT | 1 cut(s) | 1185 |
| StyD4I | CCNGG | 6 cut(s) | 694, 990, 991, 1146, 1558, 1559 |
| StyI | CCWWGG | 2 cut(s) | 1180, 1655 |
| TaiI | ACGT | 8 cut(s) | 603, 939, 1165, 1605, 1894, 2137, 2344, 2786 |
| TaqI | TCGA | 3 cut(s) | 109, 1785, 4302 |
| TatI | WGTACW | 1 cut(s) | 1934 |
| TauI | GCSGC | 2 cut(s) | 4417, 4554 |
| TscAI | CASTG | 7 cut(s) | 2845, 3058, 3271, 3484, 3694, 3907, 4120 |
| TseFI | GTSAC | 9 cut(s) | 416, 1545, 2135, 2840, 3053, 3266, 3689, 3902, 4115 |
| Tsp45I | GTSAC | 9 cut(s) | 416, 1545, 2135, 2840, 3053, 3266, 3689, 3902, 4115 |
| TspDTI | ATGAA | 8 cut(s) | 27, 324, 576, 1143, 1569, 1718, 1934, 2427 |
| TspGWI | ACGGA | 5 cut(s) | 152, 1791, 2637, 2705, 4654 |
| TspMI | CCCGGG | 2 cut(s) | 991, 1559 |
| TspRI | CASTG | 7 cut(s) | 2845, 3058, 3271, 3484, 3694, 3907, 4120 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4101 |
| Vha464I | CTTAAG | 1 cut(s) | 479 |
| VpaK11BI | GGWCC | 2 cut(s) | 1274, 2683 |
| XceI | RCATGY | 4 cut(s) | 1142, 1382, 1800, 1917 |
| XmaI | CCCGGG | 2 cut(s) | 991, 1559 |
| XmiI | GTMKAC | 3 cut(s) | 149, 634, 1059 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1115, 1344 |
| XspI | CTAG | 5 cut(s) | 803, 948, 1322, 1403, 4265 |
| Zsp2I | ATGCAT | 3 cut(s) | 1117, 1144, 1503 |