TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 15 - 182 | 9.8e-52 | TIR domain |
| TIR_2 | PF13676 | 16 - 112 | 7.5e-15 | TIR domain |
| LRR_14 | PF23598 | 408 - 483 | 5.1e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 427 - 512 | 4.3e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 455 - 531 | 2.6e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 491 - 544 | 4.9e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 511 - 659 | 3.6e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 705 - 852 | 1.6e-17 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3317 |
| Acc16I | TGCGCA | 1 cut(s) | 1941 |
| AccB1I | GGYRCC | 3 cut(s) | 768, 988, 2529 |
| AccI | GTMKAC | 2 cut(s) | 132, 178 |
| AccII | CGCG | 3 cut(s) | 236, 390, 2228 |
| AccIII | TCCGGA | 1 cut(s) | 1468 |
| AciI | CCGC | 5 cut(s) | 394, 432, 2228, 3221, 4130 |
| AclWI | GGATC | 8 cut(s) | 265, 323, 423, 2947, 3594, 3840, 4182, 4524 |
| AcoI | YGGCCR | 3 cut(s) | 716, 1688, 2740 |
| AcsI | RAATTY | 8 cut(s) | 697, 1546, 1555, 1645, 2127, 2405, 2456, 2570 |
| AcuI | CTGAAG | 5 cut(s) | 630, 983, 1772, 3177, 4053 |
| AcyI | GRCGYC | 1 cut(s) | 989 |
| AfaI | GTAC | 9 cut(s) | 674, 1024, 1714, 2284, 2309, 2604, 2815, 2998, 3277 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 114, 400, 2080, 2081, 2772, 2963, 3170 |
| AflII | CTTAAG | 3 cut(s) | 962, 1103, 1223 |
| AflIII | ACRYGT | 2 cut(s) | 598, 2376 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1610, 3159 |
| AjnI | CCWGG | 7 cut(s) | 108, 273, 1633, 2116, 2244, 3142, 3337 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4580, 4612 |
| Alw21I | GWGCWC | 5 cut(s) | 1097, 1523, 2516, 2734, 2827 |
| Alw26I | GTCTC | 5 cut(s) | 1618, 1885, 1986, 2264, 3146 |
| Alw44I | GTGCAC | 1 cut(s) | 1093 |
| AlwI | GGATC | 8 cut(s) | 265, 323, 423, 2947, 3594, 3840, 4182, 4524 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 274, 1479, 3959, 4301 |
| Ama87I | CYCGRG | 3 cut(s) | 75, 1187, 1328 |
| Aor13HI | TCCGGA | 1 cut(s) | 1468 |
| ApaI | GGGCCC | 1 cut(s) | 2350 |
| ApaLI | GTGCAC | 1 cut(s) | 1093 |
| ApeKI | GCWGC | 8 cut(s) | 917, 1119, 1164, 1305, 1838, 2022, 4190, 4532 |
| ApoI | RAATTY | 8 cut(s) | 697, 1546, 1555, 1645, 2127, 2405, 2456, 2570 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1443, 1475 |
| AseI | ATTAAT | 1 cut(s) | 2415 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1413 |
| AspLEI | GCGC | 7 cut(s) | 724, 991, 1942, 2228, 3296, 3921, 4263 |
| AspS9I | GGNCC | 7 cut(s) | 684, 1672, 2346, 2347, 2800, 3024, 3161 |
| AsuC2I | CCSGG | 1 cut(s) | 1610 |
| AvaI | CYCGRG | 3 cut(s) | 75, 1187, 1328 |
| AvaII | GGWCC | 2 cut(s) | 2800, 3161 |
| AxyI | CCTNAGG | 1 cut(s) | 2079 |
| BaeGI | GKGCMC | 3 cut(s) | 771, 1097, 2350 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2972, 3005 |
| BalI | TGGCCA | 1 cut(s) | 1690 |
| BanI | GGYRCC | 3 cut(s) | 768, 988, 2529 |
| BanII | GRGCYC | 1 cut(s) | 2350 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2684, 2716 |
| BauI | CACGAG | 1 cut(s) | 2671 |
| BbsI | GAAGAC | 7 cut(s) | 40, 125, 1103, 1457, 2154, 4013, 4355 |
| Bbv12I | GWGCWC | 5 cut(s) | 1097, 1523, 2516, 2734, 2827 |
| BbvCI | CCTCAGC | 4 cut(s) | 3582, 3828, 4170, 4512 |
| BbvI | GCAGC | 8 cut(s) | 904, 1131, 1151, 1292, 1850, 2034, 4177, 4519 |
| BceAI | ACGGC | 2 cut(s) | 1286, 1427 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1438, 1472 |
| BciT130I | CCWGG | 7 cut(s) | 110, 275, 1635, 2118, 2246, 3144, 3339 |
| BciVI | GTATCC | 1 cut(s) | 520 |
| BclI | TGATCA | 1 cut(s) | 2251 |
| BcnI | CCSGG | 1 cut(s) | 1610 |
| BcoDI | GTCTC | 5 cut(s) | 1618, 1885, 1986, 2264, 3146 |
| BfaI | CTAG | 2 cut(s) | 3288, 3707 |
| BfmI | CTRYAG | 1 cut(s) | 1836 |
| BfoI | RGCGCY | 1 cut(s) | 992 |
| BfrI | CTTAAG | 3 cut(s) | 962, 1103, 1223 |
| BfuI | GTATCC | 1 cut(s) | 520 |
| BisI | GCNGC | 8 cut(s) | 918, 1120, 1165, 1306, 1839, 2023, 4191, 4533 |
| BlpI | GCTNAGC | 1 cut(s) | 3990 |
| BlsI | GCNGC | 8 cut(s) | 919, 1121, 1166, 1307, 1840, 2024, 4192, 4534 |
| BmcAI | AGTACT | 1 cut(s) | 674 |
| Bme1390I | CCNGG | 8 cut(s) | 110, 275, 1610, 1635, 2118, 2246, 3144, 3339 |
| Bme18I | GGWCC | 2 cut(s) | 2800, 3161 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1610, 3159 |
| BmeT110I | CYCGRG | 3 cut(s) | 75, 1187, 1328 |
| BmgT120I | GGNCC | 7 cut(s) | 684, 1672, 2346, 2347, 2800, 3024, 3161 |
| BmrFI | CCNGG | 8 cut(s) | 110, 275, 1610, 1635, 2118, 2246, 3144, 3339 |
| BmrI | ACTGGG | 1 cut(s) | 1862 |
| BmuI | ACTGGG | 1 cut(s) | 1862 |
| BpiI | GAAGAC | 7 cut(s) | 40, 125, 1103, 1457, 2154, 4013, 4355 |
| BpmI | CTGGAG | 2 cut(s) | 445, 673 |
| Bpu10I | CCTNAGC | 4 cut(s) | 3582, 3828, 4170, 4512 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3990 |
| BpuEI | CTTGAG | 5 cut(s) | 1099, 1127, 1196, 1337, 1598 |
| BpuMI | CCSGG | 1 cut(s) | 1610 |
| BsaAI | YACGTR | 1 cut(s) | 2353 |
| BsaBI | GATNNNNATC | 1 cut(s) | 935 |
| BsaHI | GRCGYC | 1 cut(s) | 989 |
| BsaI | GGTCTC | 1 cut(s) | 1618 |
| BsaJI | CCNNGG | 7 cut(s) | 108, 912, 1513, 2244, 2245, 2396, 2488 |
| BsaWI | WCCGGW | 1 cut(s) | 1468 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 114, 400, 2080, 2081, 2772, 2963, 3170 |
| Bse118I | RCCGGY | 1 cut(s) | 718 |
| Bse1I | ACTGG | 6 cut(s) | 267, 1857, 2363, 2802, 2936, 4126 |
| Bse21I | CCTNAGG | 1 cut(s) | 2079 |
| Bse3DI | GCAATG | 4 cut(s) | 189, 1770, 2299, 3259 |
| Bse8I | GATNNNNATC | 1 cut(s) | 935 |
| BseAI | TCCGGA | 1 cut(s) | 1468 |
| BseBI | CCWGG | 7 cut(s) | 110, 275, 1635, 2118, 2246, 3144, 3339 |
| BseDI | CCNNGG | 7 cut(s) | 108, 912, 1513, 2244, 2245, 2396, 2488 |
| BseGI | GGATG | 8 cut(s) | 490, 836, 1046, 1256, 1397, 2923, 2937, 4615 |
| BseJI | GATNNNNATC | 1 cut(s) | 935 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 114, 400, 2080, 2081, 2772, 2963, 3170 |
| BseMI | GCAATG | 4 cut(s) | 189, 1770, 2299, 3259 |
| BseNI | ACTGG | 6 cut(s) | 267, 1857, 2363, 2802, 2936, 4126 |
| BseRI | GAGGAG | 3 cut(s) | 2067, 3225, 3698 |
| BseSI | GKGCMC | 3 cut(s) | 771, 1097, 2350 |
| BseXI | GCAGC | 8 cut(s) | 904, 1131, 1151, 1292, 1850, 2034, 4177, 4519 |
| BseYI | CCCAGC | 3 cut(s) | 378, 462, 2175 |
| BsgI | GTGCAG | 3 cut(s) | 287, 437, 964 |
| Bsh1236I | CGCG | 3 cut(s) | 236, 390, 2228 |
| Bsh1285I | CGRYCG | 1 cut(s) | 394 |
| BshNI | GGYRCC | 3 cut(s) | 768, 988, 2529 |
| BsiEI | CGRYCG | 1 cut(s) | 394 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1097, 1523, 2516, 2734, 2827 |
| BsiHKCI | CYCGRG | 3 cut(s) | 75, 1187, 1328 |
| BsiSI | CCGG | 4 cut(s) | 719, 1161, 1469, 1610 |
| BslFI | GGGAC | 2 cut(s) | 1293, 1434 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 114, 400, 2080, 2081, 2772, 2963, 3170 |
| BsmAI | GTCTC | 5 cut(s) | 1618, 1885, 1986, 2264, 3146 |
| BsmFI | GGGAC | 2 cut(s) | 1293, 1434 |
| BsmI | GAATGC | 1 cut(s) | 1122 |
| Bso31I | GGTCTC | 1 cut(s) | 1618 |
| BsoBI | CYCGRG | 3 cut(s) | 75, 1187, 1328 |
| Bsp120I | GGGCCC | 1 cut(s) | 2346 |
| Bsp1286I | GDGCHC | 7 cut(s) | 771, 1097, 1523, 2350, 2516, 2734, 2827 |
| Bsp13I | TCCGGA | 1 cut(s) | 1468 |
| Bsp1407I | TGTACA | 2 cut(s) | 1022, 2996 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3990 |
| Bsp19I | CCATGG | 1 cut(s) | 2396 |
| BspACI | CCGC | 5 cut(s) | 394, 432, 2228, 3221, 4130 |
| BspEI | TCCGGA | 1 cut(s) | 1468 |
| BspFNI | CGCG | 3 cut(s) | 236, 390, 2228 |
| BspHI | TCATGA | 3 cut(s) | 2746, 3307, 3835 |
| BspMAI | CTGCAG | 1 cut(s) | 1840 |
| BspPI | GGATC | 8 cut(s) | 265, 323, 423, 2947, 3594, 3840, 4182, 4524 |
| BspQI | GCTCTTC | 1 cut(s) | 1820 |
| BspT107I | GGYRCC | 3 cut(s) | 768, 988, 2529 |
| BspTI | CTTAAG | 3 cut(s) | 962, 1103, 1223 |
| BspTNI | GGTCTC | 1 cut(s) | 1618 |
| BsrDI | GCAATG | 4 cut(s) | 189, 1770, 2299, 3259 |
| BsrFI | RCCGGY | 1 cut(s) | 718 |
| BsrGI | TGTACA | 2 cut(s) | 1022, 2996 |
| BsrI | ACTGG | 6 cut(s) | 267, 1857, 2363, 2802, 2936, 4126 |
| BssAI | RCCGGY | 1 cut(s) | 718 |
| BssECI | CCNNGG | 7 cut(s) | 108, 912, 1513, 2244, 2245, 2396, 2488 |
| BssNI | GRCGYC | 1 cut(s) | 989 |
| BssSI | CACGAG | 1 cut(s) | 2671 |
| BssT1I | CCWWGG | 2 cut(s) | 912, 2396 |
| Bst2BI | CACGAG | 1 cut(s) | 2671 |
| Bst2UI | CCWGG | 7 cut(s) | 110, 275, 1635, 2118, 2246, 3144, 3339 |
| Bst6I | CTCTTC | 5 cut(s) | 1820, 2852, 3114, 3494, 3665 |
| BstACI | GRCGYC | 1 cut(s) | 989 |
| BstAFI | CTTAAG | 3 cut(s) | 962, 1103, 1223 |
| BstAUI | TGTACA | 2 cut(s) | 1022, 2996 |
| BstBAI | YACGTR | 1 cut(s) | 2353 |
| BstC8I | GCNNGC | 7 cut(s) | 460, 720, 1832, 1836, 2027, 3042, 3424 |
| BstDSI | CCRYGG | 2 cut(s) | 1513, 2396 |
| BstEII | GGTNACC | 1 cut(s) | 815 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2961 |
| BstF5I | GGATG | 8 cut(s) | 490, 836, 1046, 1256, 1397, 2923, 2937, 4615 |
| BstFNI | CGCG | 3 cut(s) | 236, 390, 2228 |
| BstH2I | RGCGCY | 1 cut(s) | 992 |
| BstHHI | GCGC | 7 cut(s) | 724, 991, 1942, 2228, 3296, 3921, 4263 |
| BstMAI | GTCTC | 5 cut(s) | 1618, 1885, 1986, 2264, 3146 |
| BstMCI | CGRYCG | 1 cut(s) | 394 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 90, 1970, 2225, 3293, 4190, 4532 |
| BstNI | CCWGG | 7 cut(s) | 110, 275, 1635, 2118, 2246, 3144, 3339 |
| BstNSI | RCATGY | 3 cut(s) | 602, 877, 2380 |
| BstPI | GGTNACC | 1 cut(s) | 815 |
| BstSCI | CCNGG | 8 cut(s) | 108, 273, 1608, 1633, 2116, 2244, 3142, 3337 |
| BstSFI | CTRYAG | 1 cut(s) | 1836 |
| BstSLI | GKGCMC | 3 cut(s) | 771, 1097, 2350 |
| BstUI | CGCG | 3 cut(s) | 236, 390, 2228 |
| BstV1I | GCAGC | 8 cut(s) | 904, 1131, 1151, 1292, 1850, 2034, 4177, 4519 |
| BstV2I | GAAGAC | 7 cut(s) | 40, 125, 1103, 1457, 2154, 4013, 4355 |
| BstX2I | RGATCY | 3 cut(s) | 270, 328, 428 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2190 |
| BstYI | RGATCY | 3 cut(s) | 270, 328, 428 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2079 |
| BsuI | GTATCC | 1 cut(s) | 520 |
| BtgI | CCRYGG | 2 cut(s) | 1513, 2396 |
| BtsCI | GGATG | 8 cut(s) | 490, 836, 1046, 1256, 1397, 2923, 2937, 4615 |
| BtsI | GCAGTG | 4 cut(s) | 1236, 1377, 2662, 2848 |
| Cac8I | GCNNGC | 7 cut(s) | 460, 720, 1832, 1836, 2027, 3042, 3424 |
| CaiI | CAGNNNCTG | 4 cut(s) | 274, 1479, 3959, 4301 |
| CciI | TCATGA | 3 cut(s) | 2746, 3307, 3835 |
| CfoI | GCGC | 7 cut(s) | 724, 991, 1942, 2228, 3296, 3921, 4263 |
| Cfr10I | RCCGGY | 1 cut(s) | 718 |
| Cfr13I | GGNCC | 7 cut(s) | 684, 1672, 2346, 2347, 2800, 3024, 3161 |
| CseI | GACGC | 1 cut(s) | 2991 |
| CsiI | ACCWGGT | 1 cut(s) | 3142 |
| Csp6I | GTAC | 9 cut(s) | 673, 1023, 1713, 2283, 2308, 2603, 2814, 2997, 3276 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1014, 1049 |
| CviQI | GTAC | 9 cut(s) | 673, 1023, 1713, 2283, 2308, 2603, 2814, 2997, 3276 |
| DinI | GGCGCC | 1 cut(s) | 990 |
| DraI | TTTAAA | 3 cut(s) | 438, 1086, 1560 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3317 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1610, 3159 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3317 |
| EaeI | YGGCCR | 3 cut(s) | 716, 1688, 2740 |
| Eam1104I | CTCTTC | 5 cut(s) | 1820, 2852, 3114, 3494, 3665 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1610, 3159 |
| EarI | CTCTTC | 5 cut(s) | 1820, 2852, 3114, 3494, 3665 |
| Eco130I | CCWWGG | 2 cut(s) | 912, 2396 |
| Eco147I | AGGCCT | 1 cut(s) | 1068 |
| Eco24I | GRGCYC | 1 cut(s) | 2350 |
| Eco31I | GGTCTC | 1 cut(s) | 1618 |
| Eco32I | GATATC | 1 cut(s) | 1993 |
| Eco47I | GGWCC | 2 cut(s) | 2800, 3161 |
| Eco57I | CTGAAG | 5 cut(s) | 630, 983, 1772, 3177, 4053 |
| Eco81I | CCTNAGG | 1 cut(s) | 2079 |
| Eco88I | CYCGRG | 3 cut(s) | 75, 1187, 1328 |
| Eco91I | GGTNACC | 1 cut(s) | 815 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2961 |
| EcoO109I | RGGNCCY | 4 cut(s) | 684, 1672, 2346, 3161 |
| EcoO65I | GGTNACC | 1 cut(s) | 815 |
| EcoRII | CCWGG | 7 cut(s) | 108, 273, 1633, 2116, 2244, 3142, 3337 |
| EcoRV | GATATC | 1 cut(s) | 1993 |
| EcoT14I | CCWWGG | 2 cut(s) | 912, 2396 |
| EcoT38I | GRGCYC | 1 cut(s) | 2350 |
| EgeI | GGCGCC | 1 cut(s) | 990 |
| EheI | GGCGCC | 1 cut(s) | 990 |
| ErhI | CCWWGG | 2 cut(s) | 912, 2396 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2500, 2532 |
| FaqI | GGGAC | 2 cut(s) | 1293, 1434 |
| FauNDI | CATATG | 1 cut(s) | 1128 |
| FbaI | TGATCA | 1 cut(s) | 2251 |
| FblI | GTMKAC | 2 cut(s) | 132, 178 |
| Fnu4HI | GCNGC | 8 cut(s) | 918, 1120, 1165, 1306, 1839, 2023, 4191, 4533 |
| FokI | GGATG | 8 cut(s) | 497, 823, 1033, 1243, 1384, 2924, 2930, 4622 |
| FriOI | GRGCYC | 1 cut(s) | 2350 |
| Fsp4HI | GCNGC | 8 cut(s) | 918, 1120, 1165, 1306, 1839, 2023, 4191, 4533 |
| FspAI | RTGCGCAY | 1 cut(s) | 1941 |
| FspBI | CTAG | 2 cut(s) | 3288, 3707 |
| FspI | TGCGCA | 1 cut(s) | 1941 |
| GlaI | GCGC | 7 cut(s) | 723, 990, 1941, 2227, 3295, 3920, 4262 |
| GluI | GCNGC | 8 cut(s) | 918, 1120, 1165, 1306, 1839, 2023, 4191, 4533 |
| GsaI | CCCAGC | 3 cut(s) | 382, 466, 2179 |
| GsuI | CTGGAG | 2 cut(s) | 445, 673 |
| HaeII | RGCGCY | 1 cut(s) | 992 |
| HapII | CCGG | 4 cut(s) | 719, 1161, 1469, 1610 |
| HgaI | GACGC | 1 cut(s) | 2991 |
| HhaI | GCGC | 7 cut(s) | 724, 991, 1942, 2228, 3296, 3921, 4263 |
| Hin1I | GRCGYC | 1 cut(s) | 989 |
| Hin6I | GCGC | 7 cut(s) | 722, 989, 1940, 2226, 3294, 3919, 4261 |
| HinP1I | GCGC | 7 cut(s) | 722, 989, 1940, 2226, 3294, 3919, 4261 |
| HincII | GTYRAC | 3 cut(s) | 865, 2477, 3120 |
| HindII | GTYRAC | 3 cut(s) | 865, 2477, 3120 |
| HindIII | AAGCTT | 4 cut(s) | 203, 369, 612, 995 |
| HinfI | GANTC | 9 cut(s) | 197, 467, 648, 1108, 1605, 2948, 3228, 4064, 4406 |
| HpaII | CCGG | 4 cut(s) | 719, 1161, 1469, 1610 |
| Hpy99I | CGWCG | 1 cut(s) | 4619 |
| HpyCH4IV | ACGT | 3 cut(s) | 6, 2352, 3495 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 90, 1970, 2225, 3293, 4190, 4532 |
| HpySE526I | ACGT | 3 cut(s) | 6, 2352, 3495 |
| Hsp92I | GRCGYC | 1 cut(s) | 989 |
| HspAI | GCGC | 7 cut(s) | 722, 989, 1940, 2226, 3294, 3919, 4261 |
| KasI | GGCGCC | 1 cut(s) | 988 |
| Kpn2I | TCCGGA | 1 cut(s) | 1468 |
| KroI | GCCGGC | 1 cut(s) | 718 |
| KroNI | GCCGGC | 1 cut(s) | 720 |
| Ksp22I | TGATCA | 1 cut(s) | 2251 |
| LguI | GCTCTTC | 1 cut(s) | 1820 |
| LmnI | GCTCC | 9 cut(s) | 953, 1219, 1360, 2593, 2628, 2695, 2779, 3212, 3341 |
| Lsp1109I | GCAGC | 8 cut(s) | 904, 1131, 1151, 1292, 1850, 2034, 4177, 4519 |
| MabI | ACCWGGT | 1 cut(s) | 3142 |
| MaeI | CTAG | 2 cut(s) | 3288, 3707 |
| MaeII | ACGT | 3 cut(s) | 6, 2352, 3495 |
| MfeI | CAATTG | 2 cut(s) | 1404, 1698 |
| MflI | RGATCY | 3 cut(s) | 270, 328, 428 |
| MhlI | GDGCHC | 7 cut(s) | 771, 1097, 1523, 2350, 2516, 2734, 2827 |
| MlsI | TGGCCA | 1 cut(s) | 1690 |
| MluNI | TGGCCA | 1 cut(s) | 1690 |
| Mly113I | GGCGCC | 1 cut(s) | 989 |
| MlyI | GAGTC | 4 cut(s) | 1117, 1599, 2957, 3237 |
| MmeI | TCCRAC | 1 cut(s) | 3080 |
| Mox20I | TGGCCA | 1 cut(s) | 1690 |
| MroI | TCCGGA | 1 cut(s) | 1468 |
| MroNI | GCCGGC | 1 cut(s) | 718 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1413 |
| MscI | TGGCCA | 1 cut(s) | 1690 |
| MslI | CAYNNNNRTG | 4 cut(s) | 603, 762, 1127, 2381 |
| Msp20I | TGGCCA | 1 cut(s) | 1690 |
| MspA1I | CMGCKG | 1 cut(s) | 2029 |
| MspCI | CTTAAG | 3 cut(s) | 962, 1103, 1223 |
| MspI | CCGG | 4 cut(s) | 719, 1161, 1469, 1610 |
| MspR9I | CCNGG | 8 cut(s) | 110, 275, 1610, 1635, 2118, 2246, 3144, 3339 |
| MunI | CAATTG | 2 cut(s) | 1404, 1698 |
| Mva1269I | GAATGC | 1 cut(s) | 1122 |
| MvaI | CCWGG | 7 cut(s) | 110, 275, 1635, 2118, 2246, 3144, 3339 |
| MvnI | CGCG | 3 cut(s) | 236, 390, 2228 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 90, 1970, 2225, 3293, 4190, 4532 |
| NaeI | GCCGGC | 1 cut(s) | 720 |
| NarI | GGCGCC | 1 cut(s) | 989 |
| NciI | CCSGG | 1 cut(s) | 1610 |
| NcoI | CCATGG | 1 cut(s) | 2396 |
| NdeI | CATATG | 1 cut(s) | 1128 |
| NgoMIV | GCCGGC | 1 cut(s) | 718 |
| NmeAIII | GCCGAG | 2 cut(s) | 517, 2558 |
| NmuCI | GTSAC | 3 cut(s) | 2663, 2675, 2759 |
| NsbI | TGCGCA | 1 cut(s) | 1941 |
| NspI | RCATGY | 3 cut(s) | 602, 877, 2380 |
| PaeR7I | CTCGAG | 1 cut(s) | 75 |
| PagI | TCATGA | 3 cut(s) | 2746, 3307, 3835 |
| PasI | CCCWGGG | 1 cut(s) | 2245 |
| PceI | AGGCCT | 1 cut(s) | 1068 |
| PciI | ACATGT | 2 cut(s) | 598, 2376 |
| PciSI | GCTCTTC | 1 cut(s) | 1820 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2989 |
| PctI | GAATGC | 1 cut(s) | 1122 |
| PdiI | GCCGGC | 1 cut(s) | 720 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1413 |
| PfeI | GAWTC | 5 cut(s) | 197, 467, 648, 4064, 4406 |
| PfoI | TCCNGGA | 2 cut(s) | 273, 2116 |
| PkrI | GCNGC | 8 cut(s) | 919, 1121, 1166, 1307, 1840, 2024, 4192, 4534 |
| PleI | GAGTC | 4 cut(s) | 1116, 1599, 2956, 3236 |
| PluTI | GGCGCC | 1 cut(s) | 992 |
| PpsI | GAGTC | 4 cut(s) | 1116, 1599, 2956, 3236 |
| Ppu21I | YACGTR | 1 cut(s) | 2353 |
| PpuMI | RGGWCCY | 1 cut(s) | 3161 |
| PscI | ACATGT | 2 cut(s) | 598, 2376 |
| PshBI | ATTAAT | 1 cut(s) | 2415 |
| Psp5II | RGGWCCY | 1 cut(s) | 3161 |
| Psp6I | CCWGG | 7 cut(s) | 108, 273, 1633, 2116, 2244, 3142, 3337 |
| PspEI | GGTNACC | 1 cut(s) | 815 |
| PspFI | CCCAGC | 3 cut(s) | 378, 462, 2175 |
| PspGI | CCWGG | 7 cut(s) | 108, 273, 1633, 2116, 2244, 3142, 3337 |
| PspOMI | GGGCCC | 1 cut(s) | 2346 |
| PspPI | GGNCC | 7 cut(s) | 684, 1672, 2346, 2347, 2800, 3024, 3161 |
| PspPPI | RGGWCCY | 1 cut(s) | 3161 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1566, 1598 |
| PstI | CTGCAG | 1 cut(s) | 1840 |
| PstNI | CAGNNNCTG | 4 cut(s) | 274, 1479, 3959, 4301 |
| PsuI | RGATCY | 3 cut(s) | 270, 328, 428 |
| PvuII | CAGCTG | 1 cut(s) | 2029 |
| RsaI | GTAC | 9 cut(s) | 674, 1024, 1714, 2284, 2309, 2604, 2815, 2998, 3277 |
| RsaNI | GTAC | 9 cut(s) | 673, 1023, 1713, 2283, 2308, 2603, 2814, 2997, 3276 |
| RseI | CAYNNNNRTG | 4 cut(s) | 603, 762, 1127, 2381 |
| SapI | GCTCTTC | 1 cut(s) | 1820 |
| SatI | GCNGC | 8 cut(s) | 918, 1120, 1165, 1306, 1839, 2023, 4191, 4533 |
| Sau96I | GGNCC | 7 cut(s) | 684, 1672, 2346, 2347, 2800, 3024, 3161 |
| ScaI | AGTACT | 1 cut(s) | 674 |
| SchI | GAGTC | 4 cut(s) | 1117, 1599, 2957, 3237 |
| ScrFI | CCNGG | 8 cut(s) | 110, 275, 1610, 1635, 2118, 2246, 3144, 3339 |
| SduI | GDGCHC | 7 cut(s) | 771, 1097, 1523, 2350, 2516, 2734, 2827 |
| SexAI | ACCWGGT | 1 cut(s) | 3142 |
| SfcI | CTRYAG | 1 cut(s) | 1836 |
| SfoI | GGCGCC | 1 cut(s) | 990 |
| Sfr274I | CTCGAG | 1 cut(s) | 75 |
| SinI | GGWCC | 2 cut(s) | 2800, 3161 |
| SlaI | CTCGAG | 1 cut(s) | 75 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 603, 762, 1127, 2381 |
| SmlI | CTYRAG | 9 cut(s) | 75, 962, 1078, 1103, 1142, 1175, 1223, 1316, 1577 |
| SmoI | CTYRAG | 9 cut(s) | 75, 962, 1078, 1103, 1142, 1175, 1223, 1316, 1577 |
| SseBI | AGGCCT | 1 cut(s) | 1068 |
| SsiI | CCGC | 5 cut(s) | 394, 432, 2228, 3221, 4130 |
| SspDI | GGCGCC | 1 cut(s) | 988 |
| SspMI | CTAG | 2 cut(s) | 3288, 3707 |
| StuI | AGGCCT | 1 cut(s) | 1068 |
| StyD4I | CCNGG | 8 cut(s) | 108, 273, 1608, 1633, 2116, 2244, 3142, 3337 |
| StyI | CCWWGG | 2 cut(s) | 912, 2396 |
| TaiI | ACGT | 3 cut(s) | 9, 2355, 3498 |
| TaqII | GACCGA | 1 cut(s) | 3327 |
| TatI | WGTACW | 4 cut(s) | 672, 1022, 2813, 2996 |
| TfiI | GAWTC | 5 cut(s) | 197, 467, 648, 4064, 4406 |
| TseFI | GTSAC | 3 cut(s) | 2663, 2675, 2759 |
| TseI | GCWGC | 8 cut(s) | 917, 1119, 1164, 1305, 1838, 2022, 4190, 4532 |
| Tsp45I | GTSAC | 3 cut(s) | 2663, 2675, 2759 |
| TspDTI | ATGAA | 9 cut(s) | 399, 1115, 1148, 1671, 1996, 2139, 2838, 3037, 3296 |
| TspGWI | ACGGA | 6 cut(s) | 130, 1502, 2155, 2842, 2987, 3215 |
| Vha464I | CTTAAG | 3 cut(s) | 962, 1103, 1223 |
| VneI | GTGCAC | 1 cut(s) | 1093 |
| VpaK11BI | GGWCC | 2 cut(s) | 2800, 3161 |
| VspI | ATTAAT | 1 cut(s) | 2415 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2961 |
| XapI | RAATTY | 8 cut(s) | 697, 1546, 1555, 1645, 2127, 2405, 2456, 2570 |
| XceI | RCATGY | 3 cut(s) | 602, 877, 2380 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1849, 2585 |
| XhoI | CTCGAG | 1 cut(s) | 75 |
| XmiI | GTMKAC | 2 cut(s) | 132, 178 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1413 |
| XspI | CTAG | 2 cut(s) | 3288, 3707 |
| ZrmI | AGTACT | 1 cut(s) | 674 |