TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 189 | 7.9e-53 | TIR domain |
| TIR_2 | PF13676 | 14 - 110 | 1.6e-15 | TIR domain |
| NB-ARC | PF00931 | 193 - 359 | 3.9e-22 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 427 - 493 | 2.8e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 690 - 794 | 3.7e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 714 - 800 | 3.1e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 781 - 835 | 5.1e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 860 - 931 | 1.8e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 1000 - 1134 | 4.5e-18 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 749 |
| Acc16I | TGCGCA | 1 cut(s) | 2820 |
| Acc36I | ACCTGC | 2 cut(s) | 1497, 2722 |
| AccB1I | GGYRCC | 2 cut(s) | 301, 2548 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1754, 1972 |
| AccBSI | CCGCTC | 1 cut(s) | 428 |
| AccI | GTMKAC | 2 cut(s) | 1138, 1605 |
| AccIII | TCCGGA | 1 cut(s) | 2194 |
| AciI | CCGC | 7 cut(s) | 70, 426, 651, 1832, 2316, 3375, 3428 |
| AclWI | GGATC | 4 cut(s) | 317, 523, 2883, 3052 |
| AcoI | YGGCCR | 2 cut(s) | 85, 2564 |
| AcsI | RAATTY | 8 cut(s) | 592, 1220, 1236, 1936, 1979, 2327, 2413, 2707 |
| AcuI | CTGAAG | 5 cut(s) | 1051, 1856, 2057, 2267, 3033 |
| AdeI | CACNNNGTG | 2 cut(s) | 243, 992 |
| AfaI | GTAC | 8 cut(s) | 336, 765, 862, 2156, 2451, 2830, 2913, 3166 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1373, 1754, 1972, 3224 |
| AflIII | ACRYGT | 3 cut(s) | 2744, 2991, 3255 |
| AhlI | ACTAGT | 1 cut(s) | 1150 |
| AjiI | CACGTC | 1 cut(s) | 2747 |
| AjnI | CCWGG | 4 cut(s) | 1492, 1971, 3001, 3509 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 857, 889, 906, 938, 1338, 1370 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2997, 3029 |
| Alw21I | GWGCWC | 6 cut(s) | 103, 147, 258, 1402, 2147, 2390 |
| Alw26I | GTCTC | 5 cut(s) | 1316, 2111, 2415, 2753, 3144 |
| AlwI | GGATC | 4 cut(s) | 317, 523, 2883, 3052 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1930, 2172, 2346, 3017 |
| Ama87I | CYCGRG | 2 cut(s) | 2009, 2114 |
| Aor13HI | TCCGGA | 1 cut(s) | 2194 |
| AoxI | GGCC | 5 cut(s) | 85, 1626, 2564, 3222, 3324 |
| ApeKI | GCWGC | 8 cut(s) | 811, 1037, 1503, 1924, 2130, 3298, 3372, 3430 |
| ApoI | RAATTY | 8 cut(s) | 592, 1220, 1236, 1936, 1979, 2327, 2413, 2707 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 66, 98 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 780, 1220, 2190, 2331 |
| AspLEI | GCGC | 3 cut(s) | 1503, 2821, 3113 |
| AspS9I | GGNCC | 2 cut(s) | 423, 3082 |
| AsuC2I | CCSGG | 1 cut(s) | 3226 |
| AsuHPI | GGTGA | 2 cut(s) | 625, 3197 |
| AvaI | CYCGRG | 2 cut(s) | 2009, 2114 |
| AvaII | GGWCC | 2 cut(s) | 423, 3082 |
| AxyI | CCTNAGG | 1 cut(s) | 3233 |
| BalI | TGGCCA | 1 cut(s) | 2566 |
| BanI | GGYRCC | 2 cut(s) | 301, 2548 |
| BanII | GRGCYC | 5 cut(s) | 103, 147, 258, 1165, 2147 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1188, 1220 |
| BbsI | GAAGAC | 4 cut(s) | 9, 69, 301, 2658 |
| Bbv12I | GWGCWC | 6 cut(s) | 103, 147, 258, 1402, 2147, 2390 |
| BbvI | GCAGC | 8 cut(s) | 823, 1049, 1515, 1936, 2142, 3285, 3359, 3442 |
| BceAI | ACGGC | 2 cut(s) | 1184, 1569 |
| BciT130I | CCWGG | 4 cut(s) | 1494, 1973, 3003, 3511 |
| BciVI | GTATCC | 1 cut(s) | 274 |
| BclI | TGATCA | 2 cut(s) | 117, 1099 |
| BcnI | CCSGG | 1 cut(s) | 3226 |
| BcoDI | GTCTC | 5 cut(s) | 1316, 2111, 2415, 2753, 3144 |
| BcuI | ACTAGT | 1 cut(s) | 1150 |
| BfmI | CTRYAG | 2 cut(s) | 1410, 3299 |
| BfuAI | ACCTGC | 2 cut(s) | 1497, 2722 |
| BfuI | GTATCC | 1 cut(s) | 274 |
| BglII | AGATCT | 1 cut(s) | 2368 |
| BisI | GCNGC | 9 cut(s) | 812, 1038, 1504, 1925, 2131, 3299, 3373, 3428, 3431 |
| BlpI | GCTNAGC | 1 cut(s) | 2389 |
| BlsI | GCNGC | 9 cut(s) | 813, 1039, 1505, 1926, 2132, 3300, 3374, 3429, 3432 |
| Bme1390I | CCNGG | 5 cut(s) | 1494, 1973, 3003, 3226, 3511 |
| Bme18I | GGWCC | 2 cut(s) | 423, 3082 |
| BmeT110I | CYCGRG | 2 cut(s) | 2009, 2114 |
| BmgBI | CACGTC | 1 cut(s) | 2747 |
| BmgT120I | GGNCC | 2 cut(s) | 423, 3082 |
| BmiI | GGNNCC | 4 cut(s) | 303, 2510, 2550, 3230 |
| BmrFI | CCNGG | 5 cut(s) | 1494, 1973, 3003, 3226, 3511 |
| BmsI | GCATC | 9 cut(s) | 239, 1024, 1552, 1817, 2806, 2841, 3070, 3136, 3372 |
| BpiI | GAAGAC | 4 cut(s) | 9, 69, 301, 2658 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 412, 444 |
| BpmI | CTGGAG | 3 cut(s) | 439, 2657, 3566 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2389 |
| BpuEI | CTTGAG | 3 cut(s) | 629, 1116, 2171 |
| BpuMI | CCSGG | 1 cut(s) | 3226 |
| Bsa29I | ATCGAT | 1 cut(s) | 2814 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1530, 2373, 2874 |
| BsaI | GGTCTC | 1 cut(s) | 2111 |
| BsaJI | CCNNGG | 7 cut(s) | 1493, 1629, 3001, 3275, 3509, 3510, 3563 |
| BsaWI | WCCGGW | 1 cut(s) | 2194 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1373, 1754, 1972, 3224 |
| Bse1I | ACTGG | 2 cut(s) | 1773, 3549 |
| Bse21I | CCTNAGG | 1 cut(s) | 3233 |
| Bse3DI | GCAATG | 2 cut(s) | 669, 2652 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1530, 2373, 2874 |
| BseAI | TCCGGA | 1 cut(s) | 2194 |
| BseBI | CCWGG | 4 cut(s) | 1494, 1973, 3003, 3511 |
| BseCI | ATCGAT | 1 cut(s) | 2814 |
| BseDI | CCNNGG | 7 cut(s) | 1493, 1629, 3001, 3275, 3509, 3510, 3563 |
| BseGI | GGATG | 8 cut(s) | 484, 573, 1567, 1832, 2057, 2537, 2968, 3127 |
| BseJI | GATNNNNATC | 3 cut(s) | 1530, 2373, 2874 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1373, 1754, 1972, 3224 |
| BseMI | GCAATG | 2 cut(s) | 669, 2652 |
| BseMII | CTCAG | 8 cut(s) | 61, 160, 1614, 2179, 2400, 2403, 2876, 3312 |
| BseNI | ACTGG | 2 cut(s) | 1773, 3549 |
| BseXI | GCAGC | 8 cut(s) | 823, 1049, 1515, 1936, 2142, 3285, 3359, 3442 |
| BseYI | CCCAGC | 1 cut(s) | 456 |
| BsgI | GTGCAG | 2 cut(s) | 830, 2710 |
| BshFI | GGCC | 5 cut(s) | 87, 1628, 2566, 3224, 3326 |
| BshNI | GGYRCC | 2 cut(s) | 301, 2548 |
| BshVI | ATCGAT | 1 cut(s) | 2814 |
| BsiHKAI | GWGCWC | 6 cut(s) | 103, 147, 258, 1402, 2147, 2390 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2009, 2114 |
| BsiSI | CCGG | 3 cut(s) | 2195, 2905, 3225 |
| BsiWI | CGTACG | 1 cut(s) | 2449 |
| BslFI | GGGAC | 3 cut(s) | 1340, 2257, 3492 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1373, 1754, 1972, 3224 |
| BsmAI | GTCTC | 5 cut(s) | 1316, 2111, 2415, 2753, 3144 |
| BsmBI | CGTCTC | 1 cut(s) | 2753 |
| BsmFI | GGGAC | 3 cut(s) | 1340, 2257, 3492 |
| BsmI | GAATGC | 5 cut(s) | 1577, 1899, 1926, 2133, 2947 |
| BsnI | GGCC | 5 cut(s) | 87, 1628, 2566, 3224, 3326 |
| Bso31I | GGTCTC | 1 cut(s) | 2111 |
| BsoBI | CYCGRG | 2 cut(s) | 2009, 2114 |
| Bsp1286I | GDGCHC | 7 cut(s) | 103, 147, 258, 1165, 1402, 2147, 2390 |
| Bsp13I | TCCGGA | 1 cut(s) | 2194 |
| Bsp1407I | TGTACA | 1 cut(s) | 2828 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2389 |
| Bsp19I | CCATGG | 1 cut(s) | 3275 |
| BspACI | CCGC | 7 cut(s) | 70, 426, 651, 1832, 2316, 3375, 3428 |
| BspANI | GGCC | 5 cut(s) | 87, 1628, 2566, 3224, 3326 |
| BspCNI | CTCAG | 8 cut(s) | 60, 159, 1615, 2178, 2401, 2402, 2875, 3313 |
| BspDI | ATCGAT | 1 cut(s) | 2814 |
| BspEI | TCCGGA | 1 cut(s) | 2194 |
| BspHI | TCATGA | 3 cut(s) | 1519, 1798, 2211 |
| BspLI | GGNNCC | 4 cut(s) | 303, 2510, 2550, 3230 |
| BspMAI | CTGCAG | 1 cut(s) | 3303 |
| BspMI | ACCTGC | 2 cut(s) | 1497, 2722 |
| BspPI | GGATC | 4 cut(s) | 317, 523, 2883, 3052 |
| BspQI | GCTCTTC | 2 cut(s) | 135, 2076 |
| BspT107I | GGYRCC | 2 cut(s) | 301, 2548 |
| BspTNI | GGTCTC | 1 cut(s) | 2111 |
| BsrBI | CCGCTC | 1 cut(s) | 428 |
| BsrDI | GCAATG | 2 cut(s) | 669, 2652 |
| BsrGI | TGTACA | 1 cut(s) | 2828 |
| BsrI | ACTGG | 2 cut(s) | 1773, 3549 |
| BssECI | CCNNGG | 7 cut(s) | 1493, 1629, 3001, 3275, 3509, 3510, 3563 |
| BssT1I | CCWWGG | 2 cut(s) | 1629, 3275 |
| Bst2UI | CCWGG | 4 cut(s) | 1494, 1973, 3003, 3511 |
| Bst4CI | ACNGT | 5 cut(s) | 1050, 2342, 3058, 3246, 3452 |
| Bst6I | CTCTTC | 5 cut(s) | 135, 399, 2076, 2985, 3574 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1930 |
| BstAUI | TGTACA | 1 cut(s) | 2828 |
| BstC8I | GCNNGC | 4 cut(s) | 488, 1832, 2764, 3303 |
| BstDSI | CCRYGG | 2 cut(s) | 3275, 3563 |
| BstF5I | GGATG | 8 cut(s) | 484, 573, 1567, 1832, 2057, 2537, 2968, 3127 |
| BstHHI | GCGC | 3 cut(s) | 1503, 2821, 3113 |
| BstMAI | GTCTC | 5 cut(s) | 1316, 2111, 2415, 2753, 3144 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1562, 1743, 1930, 2037, 3110, 3271, 3369 |
| BstNI | CCWGG | 4 cut(s) | 1494, 1973, 3003, 3511 |
| BstNSI | RCATGY | 8 cut(s) | 938, 1311, 1435, 1888, 2995, 3159, 3259, 3427 |
| BstSCI | CCNGG | 5 cut(s) | 1492, 1971, 3001, 3224, 3509 |
| BstSFI | CTRYAG | 2 cut(s) | 1410, 3299 |
| BstV1I | GCAGC | 8 cut(s) | 823, 1049, 1515, 1936, 2142, 3285, 3359, 3442 |
| BstV2I | GAAGAC | 4 cut(s) | 9, 69, 301, 2658 |
| BstX2I | RGATCY | 2 cut(s) | 2368, 3044 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3075 |
| BstYI | RGATCY | 2 cut(s) | 2368, 3044 |
| Bsu15I | ATCGAT | 1 cut(s) | 2814 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3233 |
| BsuI | GTATCC | 1 cut(s) | 274 |
| BsuRI | GGCC | 5 cut(s) | 87, 1628, 2566, 3224, 3326 |
| BsuTUI | ATCGAT | 1 cut(s) | 2814 |
| BtgI | CCRYGG | 2 cut(s) | 3275, 3563 |
| BtgZI | GCGATG | 1 cut(s) | 1288 |
| BtrI | CACGTC | 1 cut(s) | 2747 |
| BtsCI | GGATG | 8 cut(s) | 484, 573, 1567, 1832, 2057, 2537, 2968, 3127 |
| BtsI | GCAGTG | 1 cut(s) | 1960 |
| BtsIMutI | CAGTG | 3 cut(s) | 1960, 3318, 3542 |
| BveI | ACCTGC | 2 cut(s) | 1497, 2722 |
| Cac8I | GCNNGC | 4 cut(s) | 488, 1832, 2764, 3303 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1930, 2172, 2346, 3017 |
| CciI | TCATGA | 3 cut(s) | 1519, 1798, 2211 |
| CfoI | GCGC | 3 cut(s) | 1503, 2821, 3113 |
| Cfr13I | GGNCC | 2 cut(s) | 423, 3082 |
| ClaI | ATCGAT | 1 cut(s) | 2814 |
| CsiI | ACCWGGT | 1 cut(s) | 1971 |
| Csp6I | GTAC | 8 cut(s) | 335, 764, 861, 2155, 2450, 2829, 2912, 3165 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1098, 1133 |
| CviQI | GTAC | 8 cut(s) | 335, 764, 861, 2155, 2450, 2829, 2912, 3165 |
| DraI | TTTAAA | 1 cut(s) | 2238 |
| DraIII | CACNNNGTG | 2 cut(s) | 243, 992 |
| EaeI | YGGCCR | 2 cut(s) | 85, 2564 |
| Eam1104I | CTCTTC | 5 cut(s) | 135, 399, 2076, 2985, 3574 |
| EarI | CTCTTC | 5 cut(s) | 135, 399, 2076, 2985, 3574 |
| Ecl136II | GAGCTC | 4 cut(s) | 101, 145, 256, 2145 |
| Eco130I | CCWWGG | 2 cut(s) | 1629, 3275 |
| Eco147I | AGGCCT | 1 cut(s) | 1628 |
| Eco24I | GRGCYC | 5 cut(s) | 103, 147, 258, 1165, 2147 |
| Eco31I | GGTCTC | 1 cut(s) | 2111 |
| Eco47I | GGWCC | 2 cut(s) | 423, 3082 |
| Eco53kI | GAGCTC | 4 cut(s) | 101, 145, 256, 2145 |
| Eco57I | CTGAAG | 5 cut(s) | 1051, 1856, 2057, 2267, 3033 |
| Eco81I | CCTNAGG | 1 cut(s) | 3233 |
| Eco88I | CYCGRG | 2 cut(s) | 2009, 2114 |
| EcoICRI | GAGCTC | 4 cut(s) | 101, 145, 256, 2145 |
| EcoRI | GAATTC | 1 cut(s) | 592 |
| EcoRII | CCWGG | 4 cut(s) | 1492, 1971, 3001, 3509 |
| EcoT14I | CCWWGG | 2 cut(s) | 1629, 3275 |
| EcoT22I | ATGCAT | 3 cut(s) | 232, 940, 1437 |
| EcoT38I | GRGCYC | 5 cut(s) | 103, 147, 258, 1165, 2147 |
| ErhI | CCWWGG | 2 cut(s) | 1629, 3275 |
| Esp3I | CGTCTC | 1 cut(s) | 2753 |
| FaqI | GGGAC | 3 cut(s) | 1340, 2257, 3492 |
| FauI | CCCGC | 3 cut(s) | 77, 1839, 3368 |
| FauNDI | CATATG | 1 cut(s) | 1742 |
| FbaI | TGATCA | 2 cut(s) | 117, 1099 |
| FblI | GTMKAC | 2 cut(s) | 1138, 1605 |
| Fnu4HI | GCNGC | 9 cut(s) | 812, 1038, 1504, 1925, 2131, 3299, 3373, 3428, 3431 |
| FokI | GGATG | 8 cut(s) | 491, 580, 1574, 1839, 2044, 2544, 2975, 3114 |
| FriOI | GRGCYC | 5 cut(s) | 103, 147, 258, 1165, 2147 |
| Fsp4HI | GCNGC | 9 cut(s) | 812, 1038, 1504, 1925, 2131, 3299, 3373, 3428, 3431 |
| FspAI | RTGCGCAY | 1 cut(s) | 2820 |
| FspI | TGCGCA | 1 cut(s) | 2820 |
| GlaI | GCGC | 3 cut(s) | 1502, 2820, 3112 |
| GluI | GCNGC | 9 cut(s) | 812, 1038, 1504, 1925, 2131, 3299, 3373, 3428, 3431 |
| GsaI | CCCAGC | 1 cut(s) | 460 |
| GsuI | CTGGAG | 3 cut(s) | 439, 2657, 3566 |
| HaeIII | GGCC | 5 cut(s) | 87, 1628, 2566, 3224, 3326 |
| HapII | CCGG | 3 cut(s) | 2195, 2905, 3225 |
| HhaI | GCGC | 3 cut(s) | 1503, 2821, 3113 |
| Hin6I | GCGC | 3 cut(s) | 1501, 2819, 3111 |
| HinP1I | GCGC | 3 cut(s) | 1501, 2819, 3111 |
| HincII | GTYRAC | 2 cut(s) | 1393, 1606 |
| HindII | GTYRAC | 2 cut(s) | 1393, 1606 |
| HindIII | AAGCTT | 7 cut(s) | 363, 488, 915, 1258, 2038, 2501, 2760 |
| HpaII | CCGG | 3 cut(s) | 2195, 2905, 3225 |
| HphI | GGTGA | 2 cut(s) | 625, 3197 |
| Hpy166II | GTNNAC | 6 cut(s) | 1139, 1393, 1606, 2578, 3353, 3448 |
| Hpy8I | GTNNAC | 6 cut(s) | 1139, 1393, 1606, 2578, 3353, 3448 |
| Hpy99I | CGWCG | 1 cut(s) | 2450 |
| HpyAV | CCTTC | 9 cut(s) | 793, 941, 1075, 1910, 2209, 2431, 2539, 3178, 3284 |
| HpyCH4III | ACNGT | 5 cut(s) | 1050, 2342, 3058, 3246, 3452 |
| HpyCH4IV | ACGT | 3 cut(s) | 2448, 2491, 2746 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1562, 1743, 1930, 2037, 3110, 3271, 3369 |
| HpySE526I | ACGT | 3 cut(s) | 2448, 2491, 2746 |
| HspAI | GCGC | 3 cut(s) | 1501, 2819, 3111 |
| Kpn2I | TCCGGA | 1 cut(s) | 2194 |
| Ksp22I | TGATCA | 2 cut(s) | 117, 1099 |
| LguI | GCTCTTC | 2 cut(s) | 135, 2076 |
| LmnI | GCTCC | 3 cut(s) | 2218, 2508, 3547 |
| Lsp1109I | GCAGC | 8 cut(s) | 823, 1049, 1515, 1936, 2142, 3285, 3359, 3442 |
| LweI | GCATC | 9 cut(s) | 239, 1024, 1552, 1817, 2806, 2841, 3070, 3136, 3372 |
| MabI | ACCWGGT | 1 cut(s) | 1971 |
| MaeII | ACGT | 3 cut(s) | 2448, 2491, 2746 |
| MbiI | CCGCTC | 1 cut(s) | 428 |
| MfeI | CAATTG | 2 cut(s) | 1749, 3468 |
| MflI | RGATCY | 2 cut(s) | 2368, 3044 |
| MhlI | GDGCHC | 7 cut(s) | 103, 147, 258, 1165, 1402, 2147, 2390 |
| MlsI | TGGCCA | 1 cut(s) | 2566 |
| MluNI | TGGCCA | 1 cut(s) | 2566 |
| MlyI | GAGTC | 3 cut(s) | 185, 1537, 3458 |
| MmeI | TCCRAC | 4 cut(s) | 390, 613, 1495, 3060 |
| Mox20I | TGGCCA | 1 cut(s) | 2566 |
| Mph1103I | ATGCAT | 3 cut(s) | 232, 940, 1437 |
| MroI | TCCGGA | 1 cut(s) | 2194 |
| MroXI | GAANNNNTTC | 4 cut(s) | 780, 1220, 2190, 2331 |
| MscI | TGGCCA | 1 cut(s) | 2566 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1524, 2138, 3036 |
| Msp20I | TGGCCA | 1 cut(s) | 2566 |
| MspA1I | CMGCKG | 1 cut(s) | 1834 |
| MspI | CCGG | 3 cut(s) | 2195, 2905, 3225 |
| MspR9I | CCNGG | 5 cut(s) | 1494, 1973, 3003, 3226, 3511 |
| MunI | CAATTG | 2 cut(s) | 1749, 3468 |
| Mva1269I | GAATGC | 5 cut(s) | 1577, 1899, 1926, 2133, 2947 |
| MvaI | CCWGG | 4 cut(s) | 1494, 1973, 3003, 3511 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1562, 1743, 1930, 2037, 3110, 3271, 3369 |
| NciI | CCSGG | 1 cut(s) | 3226 |
| NcoI | CCATGG | 1 cut(s) | 3275 |
| NdeI | CATATG | 1 cut(s) | 1742 |
| NlaIV | GGNNCC | 4 cut(s) | 303, 2510, 2550, 3230 |
| NmuCI | GTSAC | 4 cut(s) | 1015, 1958, 2309, 2621 |
| NsbI | TGCGCA | 1 cut(s) | 2820 |
| NsiI | ATGCAT | 3 cut(s) | 232, 940, 1437 |
| NspI | RCATGY | 8 cut(s) | 938, 1311, 1435, 1888, 2995, 3159, 3259, 3427 |
| PaeR7I | CTCGAG | 2 cut(s) | 2009, 2114 |
| PagI | TCATGA | 3 cut(s) | 1519, 1798, 2211 |
| PasI | CCCWGGG | 1 cut(s) | 3510 |
| PceI | AGGCCT | 1 cut(s) | 1628 |
| PciI | ACATGT | 2 cut(s) | 2991, 3255 |
| PciSI | GCTCTTC | 2 cut(s) | 135, 2076 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 200, 2980 |
| PctI | GAATGC | 5 cut(s) | 1577, 1899, 1926, 2133, 2947 |
| PdmI | GAANNNNTTC | 4 cut(s) | 780, 1220, 2190, 2331 |
| Pfl23II | CGTACG | 1 cut(s) | 2449 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1754, 1972 |
| PkrI | GCNGC | 9 cut(s) | 813, 1039, 1505, 1926, 2132, 3300, 3374, 3429, 3432 |
| PleI | GAGTC | 3 cut(s) | 185, 1537, 3458 |
| PpsI | GAGTC | 3 cut(s) | 185, 1537, 3458 |
| PscI | ACATGT | 2 cut(s) | 2991, 3255 |
| PsiI | TTATAA | 1 cut(s) | 749 |
| Psp124BI | GAGCTC | 4 cut(s) | 103, 147, 258, 2147 |
| Psp6I | CCWGG | 4 cut(s) | 1492, 1971, 3001, 3509 |
| PspFI | CCCAGC | 1 cut(s) | 456 |
| PspGI | CCWGG | 4 cut(s) | 1492, 1971, 3001, 3509 |
| PspLI | CGTACG | 1 cut(s) | 2449 |
| PspN4I | GGNNCC | 4 cut(s) | 303, 2510, 2550, 3230 |
| PspPI | GGNCC | 2 cut(s) | 423, 3082 |
| PstI | CTGCAG | 1 cut(s) | 3303 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1930, 2172, 2346, 3017 |
| PsuI | RGATCY | 2 cut(s) | 2368, 3044 |
| RsaI | GTAC | 8 cut(s) | 336, 765, 862, 2156, 2451, 2830, 2913, 3166 |
| RsaNI | GTAC | 8 cut(s) | 335, 764, 861, 2155, 2450, 2829, 2912, 3165 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1524, 2138, 3036 |
| SacI | GAGCTC | 4 cut(s) | 103, 147, 258, 2147 |
| SalI | GTCGAC | 1 cut(s) | 1604 |
| SapI | GCTCTTC | 2 cut(s) | 135, 2076 |
| SatI | GCNGC | 9 cut(s) | 812, 1038, 1504, 1925, 2131, 3299, 3373, 3428, 3431 |
| Sau96I | GGNCC | 2 cut(s) | 423, 3082 |
| SchI | GAGTC | 3 cut(s) | 185, 1537, 3458 |
| ScrFI | CCNGG | 5 cut(s) | 1494, 1973, 3003, 3226, 3511 |
| SduI | GDGCHC | 7 cut(s) | 103, 147, 258, 1165, 1402, 2147, 2390 |
| SexAI | ACCWGGT | 1 cut(s) | 1971 |
| SfaNI | GCATC | 9 cut(s) | 239, 1024, 1552, 1817, 2806, 2841, 3070, 3136, 3372 |
| SfcI | CTRYAG | 2 cut(s) | 1410, 3299 |
| Sfr274I | CTCGAG | 2 cut(s) | 2009, 2114 |
| SinI | GGWCC | 2 cut(s) | 423, 3082 |
| SlaI | CTCGAG | 2 cut(s) | 2009, 2114 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1524, 2138, 3036 |
| SmlI | CTYRAG | 5 cut(s) | 608, 1131, 2009, 2114, 2150 |
| SmoI | CTYRAG | 5 cut(s) | 608, 1131, 2009, 2114, 2150 |
| SpeI | ACTAGT | 1 cut(s) | 1150 |
| SseBI | AGGCCT | 1 cut(s) | 1628 |
| SsiI | CCGC | 7 cut(s) | 70, 426, 651, 1832, 2316, 3375, 3428 |
| SstI | GAGCTC | 4 cut(s) | 103, 147, 258, 2147 |
| StuI | AGGCCT | 1 cut(s) | 1628 |
| StyD4I | CCNGG | 5 cut(s) | 1492, 1971, 3001, 3224, 3509 |
| StyI | CCWWGG | 2 cut(s) | 1629, 3275 |
| TaaI | ACNGT | 5 cut(s) | 1050, 2342, 3058, 3246, 3452 |
| TaiI | ACGT | 3 cut(s) | 2451, 2494, 2749 |
| TatI | WGTACW | 2 cut(s) | 763, 2828 |
| TauI | GCSGC | 1 cut(s) | 3430 |
| TscAI | CASTG | 3 cut(s) | 1967, 3325, 3549 |
| TseFI | GTSAC | 4 cut(s) | 1015, 1958, 2309, 2621 |
| TseI | GCWGC | 8 cut(s) | 811, 1037, 1503, 1924, 2130, 3298, 3372, 3430 |
| Tsp45I | GTSAC | 4 cut(s) | 1015, 1958, 2309, 2621 |
| TspGWI | ACGGA | 4 cut(s) | 352, 1574, 2888, 3580 |
| TspRI | CASTG | 3 cut(s) | 1967, 3325, 3549 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1754, 1972 |
| VpaK11BI | GGWCC | 2 cut(s) | 423, 3082 |
| XapI | RAATTY | 8 cut(s) | 592, 1220, 1236, 1936, 1979, 2327, 2413, 2707 |
| XbaI | TCTAGA | 2 cut(s) | 1297, 2095 |
| XceI | RCATGY | 8 cut(s) | 938, 1311, 1435, 1888, 2995, 3159, 3259, 3427 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 292, 3092, 3334 |
| XhoI | CTCGAG | 2 cut(s) | 2009, 2114 |
| XmiI | GTMKAC | 2 cut(s) | 1138, 1605 |
| XmnI | GAANNNNTTC | 4 cut(s) | 780, 1220, 2190, 2331 |
| Zsp2I | ATGCAT | 3 cut(s) | 232, 940, 1437 |