MD09G1186800.v1.1

response to salt stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000067
Physical Location & Seq
Reverse (-)
16258388 .. 16260547
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1186800.v1.1.491

Sequence Viewer

Length: 1077 bp
ATGGCTTCTTGTTCTTCCATTTTTGATTGGAAGTATGATGTCTTCCTGAATTTCAGAGGCGAAGACACTCGCAAGATCTTCGTGAGCCATCTGTACAAAGCTCTAGTTCAGAACGCAGTCAACGCCTTCATTGACGCCGAAGAGCTCAGAAAAGGCAACGACCTTTCGCAGCTACTGACATCCATTCGTGACTCGAGGCTTTCGATTGTAGTTTTTTCTCAAAACTATGCTTCTTCAACATGGTGCTTGAAAGAACTCGTCCAGATCCTGCAATGCATGGATCAGAAGAAGCAGATTGTCATTCCTATTTTCTACGAAGTAGATCCATCTCATGTTCGTAAACTCGAGGGCAGTTTTGGGGAAGCTTTTTCTAAACATGAACATGATCCTAATGCCGACATGGAAGAGGTGCGGCAATGGAGATCCGCTCTACAAAGAGCCCCCAATTTATCTGGCTGGGATTCGCGAAATTACCAGGATGATGCCAAGCTTATTGAGTTGATTGTAGATGATATTTTTAAGAAATTGATCAATACCTCATCAAGTGAAAAGAATGGCTTGGTTGGAATGGATTCCCGCTTACAGAAAATGGATTCATTATTATGTCCAGAGGTGGATACCGTTCGCTTTGTTGGAATATGGGGTATGGGTGGTATCGGCAAAACCACCATCGCTAGAGCTATGTATGACAAAATCAATCATCACTTCGAAGGTGGTTGCTTTCTTGAAAATGTCAAGGGACGTTTTCCGTCAACCGATGCAGGTGAAGCACCACTAGATATGCAGGCACAACTTCTATCTAGTATCACGAATACGAAGGTGGGGAGTTCAGAGATTTTGAGAAATGGTTTTCAGAAGATGATGGAAAGAGTTGGTAAGAAAAAAGTTTTAGTTGTTCTTGATAATGTGGAGAATTCATCCCAAATTGAAGCCTTAATTGGAAAGCAACTCTCATTTGGTGGAGGAAGTCGAATCATTATAACAACTAGAGATAACCAGTCACTAAGTAGACTTGGTGATCAAATATATAAGCCCGAGTTGTTAAATGACAGTGACGCTCGCGAGCTGTTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 NB-ARC TIR

Protein Analysis

359

Amino Acids

40.44

Weight (kDa)

5.95

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 189 1e-57 TIR domain
TIR_2 PF13676 14 - 109 2.7e-15 TIR domain
NB-ARC PF00931 205 - 357 1.1e-14 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 980
AarI CACCTGC 1 cut(s) 752
Acc36I ACCTGC 1 cut(s) 752
AccBSI CCGCTC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 1009
AccII CGCG 2 cut(s) 466, 1062
AciI CCGC 3 cut(s) 412, 426, 577
AclWI GGATC 5 cut(s) 259, 288, 317, 380, 417
AcsI RAATTY 2 cut(s) 49, 913
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 95
AgsI TTSAA 4 cut(s) 237, 250, 728, 929
AjnI CCWGG 1 cut(s) 474
AjuI GAANNNNNNNTTGG 2 cut(s) 921, 953
AluBI AGCT 7 cut(s) 101, 145, 172, 365, 490, 680, 1066
AluI AGCT 7 cut(s) 101, 145, 172, 365, 490, 680, 1066
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 5 cut(s) 259, 288, 317, 380, 417
AlwNI CAGNNNCTG 2 cut(s) 175, 268
Ama87I CYCGRG 3 cut(s) 193, 344, 1034
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 2 cut(s) 49, 913
Asp700I GAANNNNTTC 1 cut(s) 571
AsuHPI GGTGA 2 cut(s) 776, 1028
AsuII TTCGAA 1 cut(s) 708
AvaI CYCGRG 3 cut(s) 193, 344, 1034
BanII GRGCYC 2 cut(s) 147, 442
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BbsI GAAGAC 2 cut(s) 34, 69
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 181
BccI CCATC 4 cut(s) 96, 334, 677, 856
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BciT130I CCWGG 1 cut(s) 476
BciVI GTATCC 1 cut(s) 610
BclI TGATCA 2 cut(s) 528, 1018
BfaI CTAG 5 cut(s) 104, 675, 776, 801, 987
BfuAI ACCTGC 1 cut(s) 752
BfuI GTATCC 1 cut(s) 610
BglII AGATCT 1 cut(s) 75
BisI GCNGC 2 cut(s) 170, 413
BlsI GCNGC 2 cut(s) 171, 414
Bme1390I CCNGG 1 cut(s) 476
BmeT110I CYCGRG 3 cut(s) 193, 344, 1034
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 2 cut(s) 472, 748
BpiI GAAGAC 2 cut(s) 34, 69
BplI GAGNNNNNCTC 2 cut(s) 412, 444
Bpu14I TTCGAA 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 997
Bse3DI GCAATG 2 cut(s) 278, 422
BseBI CCWGG 1 cut(s) 476
BseGI GGATG 3 cut(s) 179, 484, 917
BseMI GCAATG 2 cut(s) 278, 422
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 997
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 456
Bsh1236I CGCG 2 cut(s) 466, 1062
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 3 cut(s) 193, 344, 1034
BslFI GGGAC 1 cut(s) 753
BsmFI GGGAC 1 cut(s) 753
BsoBI CYCGRG 3 cut(s) 193, 344, 1034
Bsp119I TTCGAA 1 cut(s) 708
Bsp1286I GDGCHC 2 cut(s) 147, 442
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 8 cut(s) 75, 264, 280, 322, 385, 422, 528, 1018
Bsp68I TCGCGA 2 cut(s) 466, 1062
BspACI CCGC 3 cut(s) 412, 426, 577
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 2 cut(s) 466, 1062
BspMI ACCTGC 1 cut(s) 752
BspPI GGATC 5 cut(s) 259, 288, 317, 380, 417
BspQI GCTCTTC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 708
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 2 cut(s) 278, 422
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 997
BssMI GATC 8 cut(s) 75, 264, 280, 322, 385, 422, 528, 1018
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 622, 1052
Bst6I CTCTTC 2 cut(s) 135, 399
BstACI GRCGYC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 93
BstBI TTCGAA 1 cut(s) 708
BstC8I GCNNGC 3 cut(s) 786, 1060, 1064
BstDEI CTNAG 2 cut(s) 146, 1004
BstF5I GGATG 3 cut(s) 179, 484, 917
BstFNI CGCG 2 cut(s) 466, 1062
BstKTI GATC 8 cut(s) 78, 267, 283, 325, 388, 425, 531, 1021
BstMBI GATC 8 cut(s) 75, 264, 280, 322, 385, 422, 528, 1018
BstMWI GCNNNNNNNGC 2 cut(s) 122, 767
BstNI CCWGG 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 474
BstUI CGCG 2 cut(s) 466, 1062
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 2 cut(s) 34, 69
BstX2I RGATCY 4 cut(s) 75, 264, 322, 422
BstYI RGATCY 4 cut(s) 75, 264, 322, 422
BsuI GTATCC 1 cut(s) 610
BtgZI GCGATG 1 cut(s) 655
BtsCI GGATG 3 cut(s) 179, 484, 917
BtsIMutI CAGTG 1 cut(s) 1057
BtuMI TCGCGA 2 cut(s) 466, 1062
BveI ACCTGC 1 cut(s) 752
Cac8I GCNNGC 3 cut(s) 786, 1060, 1064
CaiI CAGNNNCTG 2 cut(s) 175, 268
CseI GACGC 2 cut(s) 143, 1064
Csp6I GTAC 1 cut(s) 94
CviAII CATG 6 cut(s) 240, 277, 332, 377, 383, 400
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 2 cut(s) 146, 1004
DpnI GATC 8 cut(s) 77, 266, 282, 324, 387, 424, 530, 1020
DpnII GATC 8 cut(s) 75, 264, 280, 322, 385, 422, 528, 1018
Eam1104I CTCTTC 2 cut(s) 135, 399
EarI CTCTTC 2 cut(s) 135, 399
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 2 cut(s) 147, 442
Eco53kI GAGCTC 1 cut(s) 145
Eco88I CYCGRG 3 cut(s) 193, 344, 1034
EcoICRI GAGCTC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 913
EcoRII CCWGG 1 cut(s) 474
EcoT22I ATGCAT 1 cut(s) 278
EcoT38I GRGCYC 2 cut(s) 147, 442
FaeI CATG 6 cut(s) 243, 280, 335, 380, 386, 403
FalI AAGNNNNNCTT 2 cut(s) 542, 574
FaqI GGGAC 1 cut(s) 753
FatI CATG 6 cut(s) 239, 276, 331, 376, 382, 399
FauI CCCGC 1 cut(s) 584
FbaI TGATCA 2 cut(s) 528, 1018
FblI GTMKAC 1 cut(s) 1009
Fnu4HI GCNGC 2 cut(s) 170, 413
FokI GGATG 3 cut(s) 166, 491, 904
FriOI GRGCYC 2 cut(s) 147, 442
Fsp4HI GCNGC 2 cut(s) 170, 413
FspBI CTAG 5 cut(s) 104, 675, 776, 801, 987
GluI GCNGC 2 cut(s) 170, 413
GsaI CCCAGC 1 cut(s) 460
HgaI GACGC 2 cut(s) 143, 1064
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 6 cut(s) 243, 280, 335, 380, 386, 403
HincII GTYRAC 2 cut(s) 121, 753
HindII GTYRAC 2 cut(s) 121, 753
HindIII AAGCTT 2 cut(s) 363, 488
HinfI GANTC 5 cut(s) 191, 461, 572, 593, 972
HphI GGTGA 2 cut(s) 776, 1028
Hpy166II GTNNAC 4 cut(s) 121, 341, 753, 1010
Hpy188I TCNGA 6 cut(s) 56, 111, 149, 285, 832, 855
Hpy8I GTNNAC 4 cut(s) 121, 341, 753, 1010
HpyAV CCTTC 3 cut(s) 136, 704, 811
HpyCH4III ACNGT 2 cut(s) 622, 1052
HpyCH4IV ACGT 1 cut(s) 742
HpyCH4V TGCA 4 cut(s) 271, 276, 761, 784
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 767
HpyF3I CTNAG 2 cut(s) 146, 1004
HpySE526I ACGT 1 cut(s) 742
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 6 cut(s) 243, 280, 335, 380, 386, 403
Ksp22I TGATCA 2 cut(s) 528, 1018
Kzo9I GATC 8 cut(s) 75, 264, 280, 322, 385, 422, 528, 1018
LguI GCTCTTC 1 cut(s) 135
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 2 cut(s) 472, 748
MaeI CTAG 5 cut(s) 104, 675, 776, 801, 987
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 3 cut(s) 188, 999, 1052
MalI GATC 8 cut(s) 77, 266, 282, 324, 387, 424, 530, 1020
MbiI CCGCTC 1 cut(s) 428
MboI GATC 8 cut(s) 75, 264, 280, 322, 385, 422, 528, 1018
MboII GAAGA 9 cut(s) 6, 34, 70, 74, 152, 225, 298, 416, 868
MflI RGATCY 4 cut(s) 75, 264, 322, 422
MhlI GDGCHC 2 cut(s) 147, 442
MluCI AATT 7 cut(s) 49, 445, 469, 524, 913, 924, 936
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 544, 613
MnlI CCTC 7 cut(s) 50, 189, 340, 400, 547, 604, 956
Mph1103I ATGCAT 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 571
MseI TTAA 3 cut(s) 519, 935, 1043
MslI CAYNNNNRTG 2 cut(s) 381, 601
MspR9I CCNGG 1 cut(s) 476
MvaI CCWGG 1 cut(s) 476
MvnI CGCG 2 cut(s) 466, 1062
MwoI GCNNNNNNNGC 2 cut(s) 122, 767
NdeII GATC 8 cut(s) 75, 264, 280, 322, 385, 422, 528, 1018
NlaIII CATG 6 cut(s) 243, 280, 335, 380, 386, 403
NmuCI GTSAC 3 cut(s) 188, 999, 1052
NruI TCGCGA 2 cut(s) 466, 1062
NsiI ATGCAT 1 cut(s) 278
NspV TTCGAA 1 cut(s) 708
PaeR7I CTCGAG 2 cut(s) 193, 344
PaqCI CACCTGC 1 cut(s) 752
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 571
PfeI GAWTC 4 cut(s) 461, 572, 593, 972
PkrI GCNGC 2 cut(s) 171, 414
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PsiI TTATAA 1 cut(s) 980
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 1 cut(s) 474
PspXI VCTCGAGB 2 cut(s) 193, 344
PstNI CAGNNNCTG 2 cut(s) 175, 268
PsuI RGATCY 4 cut(s) 75, 264, 322, 422
RruI TCGCGA 2 cut(s) 466, 1062
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 2 cut(s) 381, 601
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 519, 935, 1043
SatI GCNGC 2 cut(s) 170, 413
Sau3AI GATC 8 cut(s) 75, 264, 280, 322, 385, 422, 528, 1018
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 476
SduI GDGCHC 2 cut(s) 147, 442
SfaNI GCATC 2 cut(s) 472, 748
Sfr274I CTCGAG 2 cut(s) 193, 344
SfuI TTCGAA 1 cut(s) 708
SlaI CTCGAG 2 cut(s) 193, 344
SmiMI CAYNNNNRTG 2 cut(s) 381, 601
SmlI CTYRAG 2 cut(s) 193, 344
SmoI CTYRAG 2 cut(s) 193, 344
Sse9I AATT 7 cut(s) 49, 445, 469, 524, 913, 924, 936
SsiI CCGC 3 cut(s) 412, 426, 577
SspMI CTAG 5 cut(s) 104, 675, 776, 801, 987
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 474
TaaI ACNGT 2 cut(s) 622, 1052
TaiI ACGT 1 cut(s) 745
TaqI TCGA 5 cut(s) 194, 203, 345, 708, 970
TasI AATT 7 cut(s) 49, 445, 469, 524, 913, 924, 936
TatI WGTACW 1 cut(s) 93
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 4 cut(s) 461, 572, 593, 972
Tru1I TTAA 3 cut(s) 519, 935, 1043
Tru9I TTAA 3 cut(s) 519, 935, 1043
TscAI CASTG 1 cut(s) 1057
TseFI GTSAC 3 cut(s) 188, 999, 1052
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 3 cut(s) 188, 999, 1052
TspDTI ATGAA 4 cut(s) 118, 393, 585, 906
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 1 cut(s) 1057
XapI RAATTY 2 cut(s) 49, 913
XhoI CTCGAG 2 cut(s) 193, 344
XmiI GTMKAC 1 cut(s) 1009
XmnI GAANNNNTTC 1 cut(s) 571
XspI CTAG 5 cut(s) 104, 675, 776, 801, 987
Zsp2I ATGCAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.