MD07G1260000.v1.1

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000067
Physical Location & Seq
Forward (+)
32610062 .. 32614016
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1260000.v1.1.491

Sequence Viewer

Length: 2988 bp
ATGGCTGCTTCTTCTTCTTCTTCTGACCATCGTTGGAAATACGATGTGTTCATCAATTTCAGAGGGGAAGACACTCGCAGGGGCTTCGTCAGCCATCTCTACAAAGCGCTGCGTCAGAAACCAATCAACACCTTCATTGATGCCGAAGACCTCGGAAAAGGGGACCGTCTTTCCGAGCTCCTGACAGCGATTCGAGAATCAAGGCTTTCGCTTGTAGTTTTCTCTAAAAACTATGCTTATTCCACGTGGTGCTTGAAAGAACTCGTGGAAATCTTGGAATGCCACCATACCAAGAACCATATTGTGCTCCCCATTTTCTACGAAGTCGATCCATCCGATATTCGTAAACTCAAGAGAAGTTTCGAGGAAGCTTTTGCAAAGCATGATAATGATTCTAGCGCCGAAATTGAAGAGGTTCGGAGCTGGAGATCCGCTCTTACAACGGCCACCAGTTTTTCCGGCTGGGATTCACGAAACTATGAGAATGACATAAAGCTTATTGAGAAAATTGTAGAAGATGTTTATAAGAAATTGATCCACATCTCATCAAGTTCAAGCAAAGATAATCCTTTGATTGAAATGGATTCTCATATGCATGAAATGCATTTATTATTACATCCTCCTGGAGTTGAAACAAATGATGTTCGGGTTATTGGAATATGGGGTATGGGTGGTTTAGGCAAAACAACCATCGCTAGAGCTGTTTATGATGAAATCGCTTGTCAATTTGAAGCTTCTTGCTTTCTTGAAAACGTCAAGGAGGGTTTCATTAAGCATGGCAAACTACATATGCAGACACAACTTCTATCGAGTCTCTCGAACAACAAGGTGGGGAGTTCCCACATTTTGGATAAAGGTTTCCAGGTGATGTTAAATAGTCTAGCTCAGAGAAAGATCCTTATTGTTATTGATGATGTGGACAAATTAGAACAAATAGAAGCTTTACTTGGAGAGCAACATTCTTCCTTTGGTGGTGGAAGTAGAATTATTATAACAACTAGAGATTTGCAATTACTAAGCGGAACTGATGCGATATATAAGCCCAAGATTTTCAGTGATCCCGGAGCTGTAGAACTGTTTAGGCGTTACGCCTTCAGAACAAACCAACCCACTAGAGATTACGATGTTCTCACGAGGCGTGCCGTAAACTATGCTCAAGGTCTACCTCTAGCACTCAAAGTCTTGGGAGCTTCTCTTTATAACAAAACTATACTTGAGTGGAAAGGTGTCTTAGAAAAATTAAAGGAAGTCCCGCAAAGAAGGATTAATGATGTGCTTAGAACAAGCTTCGATGAACTAGATCGTACAGAGAAGAACATCTTTCTAGATATTGCATGTTTTTTTAAAGGAATGAAAAAAGACTATGCAACCGAAATCCTGGACGGTTGTGGTTTCCATCCTCATGCTGGTATTGGAGTTCTAATCGATCGAGCTCTCATAACTGTCTCAGTGTATGGGAAACTGGGGATGCATGATTTACTAGAGGAAATGGGTCGGGAAATAGTTCGCCAAGAATCTATCGAAGAGCCTGGAAGACGAAGTAGGTTGTGGAGTTATGAAGATGTTTATCGTGTGCTAACTCAAAATACGACTACAAAAGCAGTTGAAAGCATAATCCTGGATTTGTCGAACTCAGATGAGGCATGCGTAAATGCTGAAGCTTTTGTTAGTATGACTCAACTAAGACTTCTCAAAATTGTTGCTTACGGCAACAAACACCTAATTGGGAACTTAAGGTTTCTATCTCATGAGTTGAGGTGTCTCTTATGGAATAGATTCCCCCTTAAGTCTTTGCCGTCCAACCGTCAATTCAAAAATCTTGTTGACCTTGATATGCAATATAGTCTCATTGACCGACTTTGGGAAGGAACCCAGACGCTGGAAAAGTTAAAATTCATCAATTTAAGTTCCTGTCAATACCTTAAGGAAACCCCTGACTTCACAAAGATGCCAAATCTTAAGAACCTAATTCTTCGAAGTTGTATAAGATTAGTTGAGGTTCACCCGTCTATTTCGACTCATGCAAACCTTGTTTTATTGAATCTGAGTGGGTGCAAGGAACTTAAGAGTCTTCCAAGCAGCATTCGTATGAAATCTCTCACAACCCTTGATCTTTGTGACTGCTCGAGTCTTGAGATGTTTCCAGAGATTCCAGAAGTGATTGAGGGGTTAGAAGAGCTTGATTTATCCGGATCAAAAATTAAAGAACTGCCCTCGTCAATTAATAATCTCACGGGGTTGAGTTATTTGATCCTAGAAGATTGCAAGGAACTTATAAATCTTCCAAGCATCATTCGTATGAAATGTCTCCAAGTCCTTGATCTTTTTGGCTGCTCGAGTCTTGAGATGTTTCCTGAGATTCCAGAAGTGATTGAGGGGTTAGAAAAGCTTGATTTATTCGGATCAAAAATTAAAGAACTGCCCTCGTCAATTAATAATCTCACATCTCTCAAAACCCTTGATCTTTCCGGCTGCTCGAATCTTGAGATGTTTCCAGAGATTCAAGAAGTGATTGAGCGGTTAGAAGAGCTTGATTTGTCCGGATCAAAAATTAAAGAACTGCCCTCGTCAATTAATAATCTCACGGGGTTATTTTATTTGGGGCTGCAAGATTGCAAGGAACTTATAAATCTTCCAAGCAGCATTTGTCAACTTAAATCCCTATATCATCTCTATCTTTCTGGTTGCACAAAATTTGAGGTGTTTCCAAGCATTGTAGAAAATATGGAAGGATTAAGGGAGCTTCACTTGGATGGAACATCTATCAAAGAGCTTTCCCCCTCAATTGAACGGCTTCAGAGTCTTGAATATTTAAATCTGAGAAACTGCAAAAGCCTTGTACATCTTCCTGACACTCTCTGTAATTTGGCACACCTTGACGCTCTCAATCTCTGTGGGTGCCCAAACCTTTCTCAATTACCTGTCAACCTTGAGGATTTGGGACGCTTGTGGGATAATGCAGTAAAAAGGGATTTAGAACGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_3 LRR_5 LRR_8 NB-ARC TIR

Protein Analysis

996

Amino Acids

112.92

Weight (kDa)

5.76

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 13 - 189 1e-53 TIR domain
TIR_2 PF13676 16 - 114 7.9e-16 TIR domain
NB-ARC PF00931 211 - 368 5.3e-16 NB-ARC domain
WHD_ROQ1 PF23282 436 - 506 2.7e-22 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 606 - 625 5.3e-06 Leucine Rich Repeat
LRR_14 PF23598 666 - 790 6.1e-09 Leucine-rich repeat region
LRR_13 PF23286 698 - 767 4.7e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 814 - 896 9.2e-10 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 844 - 917 1.6e-10 Leucine-rich repeat region
LRR_13 PF23286 885 - 971 2.2e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 908 - 988 3.8e-08 Leucine-rich repeat region
LRR_8 PF13855 911 - 967 2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 525, 992, 1200, 2276, 2627
AccB1I GGYRCC 1 cut(s) 2898
AccB7I CCANNNNNTGG 2 cut(s) 847, 1879
AccBSI CCGCTC 2 cut(s) 434, 2518
AccI GTMKAC 1 cut(s) 1162
AccIII TCCGGA 2 cut(s) 2189, 2540
AciI CCGC 4 cut(s) 432, 1020, 1253, 2518
AclWI GGATC 9 cut(s) 323, 423, 529, 889, 1052, 2200, 2245, 2410, 2551
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 2 cut(s) 1892, 2693
AcuI CTGAAG 3 cut(s) 1078, 1677, 2780
AcvI CACGTG 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 249
AfaI GTAC 2 cut(s) 1306, 2841
AfeI AGCGCT 1 cut(s) 108
AfiI CCNNNNNNNGG 4 cut(s) 847, 1406, 1861, 1879
AflII CTTAAG 5 cut(s) 1732, 1784, 1922, 1958, 2063
AjnI CCWGG 5 cut(s) 622, 861, 1377, 1528, 1617
AjuI GAANNNNNNNTTGG 4 cut(s) 930, 962, 1793, 1825
Alw21I GWGCWC 3 cut(s) 180, 309, 1435
Alw26I GTCTC 5 cut(s) 818, 1450, 1766, 1850, 2312
AlwI GGATC 9 cut(s) 323, 423, 529, 889, 1052, 2200, 2245, 2410, 2551
AlwNI CAGNNNCTG 1 cut(s) 1879
Ama87I CYCGRG 2 cut(s) 2125, 2335
Aor13HI TCCGGA 2 cut(s) 2189, 2540
Aor51HI AGCGCT 1 cut(s) 108
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 7 cut(s) 5, 109, 2079, 2331, 2472, 2605, 2640
ApoI RAATTY 2 cut(s) 1892, 2693
AseI ATTAAT 4 cut(s) 1266, 2223, 2433, 2574
Asp700I GAANNNNTTC 4 cut(s) 414, 1503, 1775, 2793
AspLEI GCGC 2 cut(s) 109, 401
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 1062
AsuHPI GGTGA 2 cut(s) 877, 1994
AsuII TTCGAA 1 cut(s) 1975
AvaI CYCGRG 2 cut(s) 2125, 2335
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 2903
BanI GGYRCC 1 cut(s) 2898
BanII GRGCYC 2 cut(s) 180, 1435
BauI CACGAG 2 cut(s) 263, 1132
BbrPI CACGTG 1 cut(s) 246
BbsI GAAGAC 4 cut(s) 75, 153, 1540, 2063
Bbv12I GWGCWC 3 cut(s) 180, 309, 1435
BbvI GCAGC 6 cut(s) 96, 2091, 2318, 2459, 2592, 2652
BccI CCATC 6 cut(s) 36, 102, 340, 698, 1404, 2747
BceAI ACGGC 5 cut(s) 459, 1127, 1723, 1780, 2807
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 5 cut(s) 624, 863, 1379, 1530, 1619
BcnI CCSGG 1 cut(s) 1062
BcoDI GTCTC 5 cut(s) 818, 1450, 1766, 1850, 2312
BfmI CTRYAG 1 cut(s) 1068
BfoI RGCGCY 2 cut(s) 110, 402
BfrI CTTAAG 5 cut(s) 1732, 1784, 1922, 1958, 2063
BisI GCNGC 7 cut(s) 6, 110, 2080, 2332, 2473, 2606, 2641
BlsI GCNGC 7 cut(s) 7, 111, 2081, 2333, 2474, 2607, 2642
Bme1390I CCNGG 6 cut(s) 624, 863, 1062, 1379, 1530, 1619
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 2 cut(s) 2125, 2335
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 164, 1870, 2900
BmrFI CCNGG 6 cut(s) 624, 863, 1062, 1379, 1530, 1619
BmrI ACTGGG 1 cut(s) 1472
BmsI GCATC 5 cut(s) 130, 1018, 1458, 1938, 2298
BmuI ACTGGG 1 cut(s) 1472
BpiI GAAGAC 4 cut(s) 75, 153, 1540, 2063
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BpmI CTGGAG 2 cut(s) 445, 645
Bpu14I TTCGAA 1 cut(s) 1975
BpuEI CTTGAG 7 cut(s) 335, 1140, 1235, 2153, 2363, 2504, 2951
BpuMI CCSGG 1 cut(s) 1062
Bsa29I ATCGAT 1 cut(s) 1425
BsaAI YACGTR 1 cut(s) 246
BsaBI GATNNNNATC 2 cut(s) 539, 1566
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 2 cut(s) 2189, 2540
Bsc4I CCNNNNNNNGG 4 cut(s) 847, 1406, 1861, 1879
Bse1I ACTGG 2 cut(s) 450, 1467
Bse8I GATNNNNATC 2 cut(s) 539, 1566
BseAI TCCGGA 2 cut(s) 2189, 2540
BseBI CCWGG 5 cut(s) 624, 863, 1379, 1530, 1619
BseCI ATCGAT 1 cut(s) 1425
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 5 cut(s) 332, 616, 1396, 1473, 2758
BseJI GATNNNNATC 2 cut(s) 539, 1566
BseLI CCNNNNNNNGG 4 cut(s) 847, 1406, 1861, 1879
BseMII CTCAG 6 cut(s) 899, 1461, 1647, 2036, 2346, 2810
BseNI ACTGG 2 cut(s) 450, 1467
BseSI GKGCMC 1 cut(s) 2903
BseXI GCAGC 6 cut(s) 96, 2091, 2318, 2459, 2592, 2652
BseYI CCCAGC 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 1429
BshFI GGCC 1 cut(s) 446
BshNI GGYRCC 1 cut(s) 2898
BshVI ATCGAT 1 cut(s) 1425
BsiEI CGRYCG 1 cut(s) 1429
BsiHKAI GWGCWC 3 cut(s) 180, 309, 1435
BsiHKCI CYCGRG 2 cut(s) 2125, 2335
BsiSI CCGG 5 cut(s) 459, 1062, 2190, 2469, 2541
BslFI GGGAC 3 cut(s) 176, 1235, 2955
BslI CCNNNNNNNGG 4 cut(s) 847, 1406, 1861, 1879
BsmAI GTCTC 5 cut(s) 818, 1450, 1766, 1850, 2312
BsmFI GGGAC 3 cut(s) 176, 1235, 2955
BsmI GAATGC 2 cut(s) 284, 2082
BsnI GGCC 1 cut(s) 446
BsoBI CYCGRG 2 cut(s) 2125, 2335
Bsp119I TTCGAA 1 cut(s) 1975
Bsp1286I GDGCHC 4 cut(s) 180, 309, 1435, 2903
Bsp13I TCCGGA 2 cut(s) 2189, 2540
Bsp1407I TGTACA 1 cut(s) 2839
BspACI CCGC 4 cut(s) 432, 1020, 1253, 2518
BspANI GGCC 1 cut(s) 446
BspCNI CTCAG 6 cut(s) 898, 1460, 1646, 2037, 2347, 2811
BspDI ATCGAT 1 cut(s) 1425
BspEI TCCGGA 2 cut(s) 2189, 2540
BspHI TCATGA 1 cut(s) 1747
BspLI GGNNCC 3 cut(s) 164, 1870, 2900
BspPI GGATC 9 cut(s) 323, 423, 529, 889, 1052, 2200, 2245, 2410, 2551
BspQI GCTCTTC 3 cut(s) 1518, 2169, 2520
BspT104I TTCGAA 1 cut(s) 1975
BspT107I GGYRCC 1 cut(s) 2898
BspTI CTTAAG 5 cut(s) 1732, 1784, 1922, 1958, 2063
BsrBI CCGCTC 2 cut(s) 434, 2518
BsrGI TGTACA 1 cut(s) 2839
BsrI ACTGG 2 cut(s) 450, 1467
BssECI CCNNGG 1 cut(s) 151
BssSI CACGAG 2 cut(s) 263, 1132
Bst2BI CACGAG 2 cut(s) 263, 1132
Bst2UI CCWGG 5 cut(s) 624, 863, 1379, 1530, 1619
Bst4CI ACNGT 5 cut(s) 167, 1077, 1385, 1444, 1805
Bst6I CTCTTC 4 cut(s) 405, 1518, 2169, 2520
BstAFI CTTAAG 5 cut(s) 1732, 1784, 1922, 1958, 2063
BstAPI GCANNNNNTGC 1 cut(s) 601
BstAUI TGTACA 1 cut(s) 2839
BstBAI YACGTR 1 cut(s) 246
BstBI TTCGAA 1 cut(s) 1975
BstC8I GCNNGC 2 cut(s) 1140, 1645
BstF5I GGATG 5 cut(s) 332, 616, 1396, 1473, 2758
BstH2I RGCGCY 2 cut(s) 110, 402
BstHHI GCGC 2 cut(s) 109, 401
BstMAI GTCTC 5 cut(s) 818, 1450, 1766, 1850, 2312
BstMCI CGRYCG 1 cut(s) 1429
BstMWI GCNNNNNNNGC 2 cut(s) 90, 601
BstNI CCWGG 5 cut(s) 624, 863, 1379, 1530, 1619
BstNSI RCATGY 2 cut(s) 1338, 1647
BstSCI CCNGG 6 cut(s) 622, 861, 1060, 1377, 1528, 1617
BstSFI CTRYAG 1 cut(s) 1068
BstSLI GKGCMC 1 cut(s) 2903
BstV1I GCAGC 6 cut(s) 96, 2091, 2318, 2459, 2592, 2652
BstV2I GAAGAC 4 cut(s) 75, 153, 1540, 2063
BstX2I RGATCY 2 cut(s) 428, 894
BstYI RGATCY 2 cut(s) 428, 894
Bsu15I ATCGAT 1 cut(s) 1425
BsuRI GGCC 1 cut(s) 446
BsuTUI ATCGAT 1 cut(s) 1425
BtgZI GCGATG 1 cut(s) 676
BtsCI GGATG 5 cut(s) 332, 616, 1396, 1473, 2758
BtsIMutI CAGTG 2 cut(s) 1060, 1455
Cac8I GCNNGC 2 cut(s) 1140, 1645
CaiI CAGNNNCTG 1 cut(s) 1879
CciI TCATGA 1 cut(s) 1747
CfoI GCGC 2 cut(s) 109, 401
Cfr13I GGNCC 1 cut(s) 163
ClaI ATCGAT 1 cut(s) 1425
CseI GACGC 4 cut(s) 101, 1885, 2888, 2952
Csp6I GTAC 2 cut(s) 1305, 2840
CspCI CAANNNNNGTGG 2 cut(s) 2875, 2910
CviAII CATG 9 cut(s) 383, 596, 776, 1335, 1403, 1472, 1644, 1748, 2021
CviQI GTAC 2 cut(s) 1305, 2840
DraI TTTAAA 2 cut(s) 1345, 2814
DraIII CACNNNGTG 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 4 cut(s) 405, 1518, 2169, 2520
EarI CTCTTC 4 cut(s) 405, 1518, 2169, 2520
Ecl136II GAGCTC 2 cut(s) 178, 1433
Eco24I GRGCYC 2 cut(s) 180, 1435
Eco47I GGWCC 1 cut(s) 163
Eco47III AGCGCT 1 cut(s) 108
Eco53kI GAGCTC 2 cut(s) 178, 1433
Eco57I CTGAAG 3 cut(s) 1078, 1677, 2780
Eco72I CACGTG 1 cut(s) 246
Eco88I CYCGRG 2 cut(s) 2125, 2335
EcoICRI GAGCTC 2 cut(s) 178, 1433
EcoRII CCWGG 5 cut(s) 622, 861, 1377, 1528, 1617
EcoT22I ATGCAT 3 cut(s) 597, 606, 1473
EcoT38I GRGCYC 2 cut(s) 180, 1435
FaeI CATG 9 cut(s) 386, 599, 779, 1338, 1406, 1475, 1647, 1751, 2024
FalI AAGNNNNNCTT 4 cut(s) 930, 962, 1304, 1336
FaqI GGGAC 3 cut(s) 176, 1235, 2955
FatI CATG 9 cut(s) 382, 595, 775, 1334, 1402, 1471, 1643, 1747, 2020
FauI CCCGC 1 cut(s) 1260
FauNDI CATATG 2 cut(s) 591, 789
FblI GTMKAC 1 cut(s) 1162
Fnu4HI GCNGC 7 cut(s) 6, 110, 2080, 2332, 2473, 2606, 2641
FokI GGATG 5 cut(s) 319, 603, 1383, 1480, 2765
FriOI GRGCYC 2 cut(s) 180, 1435
Fsp4HI GCNGC 7 cut(s) 6, 110, 2080, 2332, 2473, 2606, 2641
GlaI GCGC 2 cut(s) 108, 400
GluI GCNGC 7 cut(s) 6, 110, 2080, 2332, 2473, 2606, 2641
GsaI CCCAGC 1 cut(s) 466
GsuI CTGGAG 2 cut(s) 445, 645
HaeII RGCGCY 2 cut(s) 110, 402
HaeIII GGCC 1 cut(s) 446
HapII CCGG 5 cut(s) 459, 1062, 2190, 2469, 2541
HgaI GACGC 4 cut(s) 101, 1885, 2888, 2952
HhaI GCGC 2 cut(s) 109, 401
Hin1II CATG 9 cut(s) 386, 599, 779, 1338, 1406, 1475, 1647, 1751, 2024
Hin6I GCGC 2 cut(s) 107, 399
HinP1I GCGC 2 cut(s) 107, 399
HincII GTYRAC 3 cut(s) 1825, 2651, 2926
HindII GTYRAC 3 cut(s) 1825, 2651, 2926
HindIII AAGCTT 7 cut(s) 369, 494, 732, 939, 1285, 1659, 2387
HpaII CCGG 5 cut(s) 459, 1062, 2190, 2469, 2541
HphI GGTGA 2 cut(s) 877, 1994
Hpy166II GTNNAC 8 cut(s) 347, 919, 1147, 1163, 1825, 2002, 2651, 2926
Hpy8I GTNNAC 8 cut(s) 347, 919, 1147, 1163, 1825, 2002, 2651, 2926
HpyAV CCTTC 5 cut(s) 142, 1102, 1254, 1859, 2723
HpyCH4III ACNGT 5 cut(s) 167, 1077, 1385, 1444, 1805
HpyCH4IV ACGT 2 cut(s) 245, 753
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 601
HpySE526I ACGT 2 cut(s) 245, 753
Hsp92II CATG 9 cut(s) 386, 599, 779, 1338, 1406, 1475, 1647, 1751, 2024
HspAI GCGC 2 cut(s) 107, 399
Kpn2I TCCGGA 2 cut(s) 2189, 2540
LguI GCTCTTC 3 cut(s) 1518, 2169, 2520
LmnI GCTCC 6 cut(s) 183, 312, 420, 1064, 1187, 2740
Lsp1109I GCAGC 6 cut(s) 96, 2091, 2318, 2459, 2592, 2652
LweI GCATC 5 cut(s) 130, 1018, 1458, 1938, 2298
MaeII ACGT 2 cut(s) 245, 753
MaeIII GTNAC 2 cut(s) 1085, 2117
MbiI CCGCTC 2 cut(s) 434, 2518
MfeI CAATTG 1 cut(s) 2784
MflI RGATCY 2 cut(s) 428, 894
MhlI GDGCHC 4 cut(s) 180, 309, 1435, 2903
MlyI GAGTC 7 cut(s) 820, 1669, 2011, 2077, 2137, 2347, 2809
MmeI TCCRAC 2 cut(s) 14, 1824
Mph1103I ATGCAT 3 cut(s) 597, 606, 1473
MroI TCCGGA 2 cut(s) 2189, 2540
MroXI GAANNNNTTC 4 cut(s) 414, 1503, 1775, 2793
MslI CAYNNNNRTG 7 cut(s) 387, 594, 1401, 1946, 2087, 2297, 2751
MspCI CTTAAG 5 cut(s) 1732, 1784, 1922, 1958, 2063
MspI CCGG 5 cut(s) 459, 1062, 2190, 2469, 2541
MspR9I CCNGG 6 cut(s) 624, 863, 1062, 1379, 1530, 1619
MunI CAATTG 1 cut(s) 2784
Mva1269I GAATGC 2 cut(s) 284, 2082
MvaI CCWGG 5 cut(s) 624, 863, 1379, 1530, 1619
MwoI GCNNNNNNNGC 2 cut(s) 90, 601
NciI CCSGG 1 cut(s) 1062
NdeI CATATG 2 cut(s) 591, 789
NlaIII CATG 9 cut(s) 386, 599, 779, 1338, 1406, 1475, 1647, 1751, 2024
NlaIV GGNNCC 3 cut(s) 164, 1870, 2900
NmuCI GTSAC 1 cut(s) 2117
NsiI ATGCAT 3 cut(s) 597, 606, 1473
NspI RCATGY 2 cut(s) 1338, 1647
NspV TTCGAA 1 cut(s) 1975
PaeI GCATGC 1 cut(s) 1647
PaeR7I CTCGAG 2 cut(s) 2125, 2335
PagI TCATGA 1 cut(s) 1747
PciSI GCTCTTC 3 cut(s) 1518, 2169, 2520
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 815
PctI GAATGC 2 cut(s) 284, 2082
PdmI GAANNNNTTC 4 cut(s) 414, 1503, 1775, 2793
PflMI CCANNNNNTGG 2 cut(s) 847, 1879
PfoI TCCNGGA 4 cut(s) 622, 1060, 1377, 1617
PkrI GCNGC 7 cut(s) 7, 111, 2081, 2333, 2474, 2607, 2642
Ple19I CGATCG 1 cut(s) 1429
PleI GAGTC 7 cut(s) 819, 1669, 2011, 2076, 2136, 2346, 2808
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
PpsI GAGTC 7 cut(s) 819, 1669, 2011, 2076, 2136, 2346, 2808
Ppu21I YACGTR 1 cut(s) 246
PshBI ATTAAT 4 cut(s) 1266, 2223, 2433, 2574
PsiI TTATAA 5 cut(s) 525, 992, 1200, 2276, 2627
Psp124BI GAGCTC 2 cut(s) 180, 1435
Psp6I CCWGG 5 cut(s) 622, 861, 1377, 1528, 1617
PspCI CACGTG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 5 cut(s) 622, 861, 1377, 1528, 1617
PspN4I GGNNCC 3 cut(s) 164, 1870, 2900
PspPI GGNCC 1 cut(s) 163
PspXI VCTCGAGB 2 cut(s) 2125, 2335
PstNI CAGNNNCTG 1 cut(s) 1879
PsuI RGATCY 2 cut(s) 428, 894
PvuI CGATCG 1 cut(s) 1429
RsaI GTAC 2 cut(s) 1306, 2841
RsaNI GTAC 2 cut(s) 1305, 2840
RseI CAYNNNNRTG 7 cut(s) 387, 594, 1401, 1946, 2087, 2297, 2751
SacI GAGCTC 2 cut(s) 180, 1435
SapI GCTCTTC 3 cut(s) 1518, 2169, 2520
SatI GCNGC 7 cut(s) 6, 110, 2080, 2332, 2473, 2606, 2641
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 7 cut(s) 820, 1669, 2011, 2077, 2137, 2347, 2809
ScrFI CCNGG 6 cut(s) 624, 863, 1062, 1379, 1530, 1619
SduI GDGCHC 4 cut(s) 180, 309, 1435, 2903
SfaNI GCATC 5 cut(s) 130, 1018, 1458, 1938, 2298
SfcI CTRYAG 1 cut(s) 1068
Sfr274I CTCGAG 2 cut(s) 2125, 2335
SfuI TTCGAA 1 cut(s) 1975
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 2 cut(s) 2125, 2335
SmiI ATTTAAAT 1 cut(s) 2814
SmiMI CAYNNNNRTG 7 cut(s) 387, 594, 1401, 1946, 2087, 2297, 2751
SphI GCATGC 1 cut(s) 1647
SsiI CCGC 4 cut(s) 432, 1020, 1253, 2518
SspI AATATT 1 cut(s) 2810
SstI GAGCTC 2 cut(s) 180, 1435
StyD4I CCNGG 6 cut(s) 622, 861, 1060, 1377, 1528, 1617
SwaI ATTTAAAT 1 cut(s) 2814
TaaI ACNGT 5 cut(s) 167, 1077, 1385, 1444, 1805
TaiI ACGT 2 cut(s) 248, 756
TaqII GACCGA 1 cut(s) 1869
TatI WGTACW 1 cut(s) 2839
TscAI CASTG 2 cut(s) 1060, 1455
TseFI GTSAC 1 cut(s) 2117
TseI GCWGC 7 cut(s) 5, 109, 2079, 2331, 2472, 2605, 2640
Tsp45I GTSAC 1 cut(s) 2117
TspRI CASTG 2 cut(s) 1060, 1455
Van91I CCANNNNNTGG 2 cut(s) 847, 1879
Vha464I CTTAAG 5 cut(s) 1732, 1784, 1922, 1958, 2063
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 4 cut(s) 1266, 2223, 2433, 2574
XapI RAATTY 2 cut(s) 1892, 2693
XbaI TCTAGA 1 cut(s) 1324
XceI RCATGY 2 cut(s) 1338, 1647
XcmI CCANNNNNNNNNTGG 1 cut(s) 1403
XhoI CTCGAG 2 cut(s) 2125, 2335
XmiI GTMKAC 1 cut(s) 1162
XmnI GAANNNNTTC 4 cut(s) 414, 1503, 1775, 2793
Zsp2I ATGCAT 3 cut(s) 597, 606, 1473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.