Rorug01G0372500

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
48587242 .. 48593334
6093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0372500.1

Sequence Viewer

Length: 3369 bp
ATGTTCCCTCAATTCGGCGCCACCGCCGATACTCTGAGCAAGGCGTCGACAATGGTGTTCCGGATCGGCACCGACGCCCACCTCTACGACGACCCCGAAGACGTCAGCATCGCTCCTCTCCTCGACAGCAAGTTCGACTCCGAGAAGTGCGAAGCTCTCAAACGTCTCCTCGCTCTCATCGCCCAGGGCTTCGACGTCTCCAATTTCTTCCCTCAGGTTGTTAAGAACGTAGCGACTCAGTCACTGGAAGTGAAGAAGCTAGTTTACTTGTACCTGCTGCATTATGCTCAGAAGCGTCCGAATGAGGCTTTGCTATCGATTAATTGCTTCCAGAAGGATCTAGGGGATCCGAACCCGTTGGTGAGGGCGTGGGCGCTGCGAGCCATGGCTGGGATCCGGCTGCATGTTATTGCACCTTTGGTTGTGGTTGCTGTGGGGAAATGTGCTAGAGATCCGTCTGTGTATGTTCGAAAATGTGCTGCCAATGCACTTCCTAAGCTGAATGATTTGCGCCTTGATGAGTATACTGCCGGTATTGAAGAGGTTATTGGAATACTGTTGAATGACAATTCCCCTTGTGTTGTTGGAGCTGCTGCCGCTGCCTTCTCTTCAATTTGTCCAACTAATTTGTCTCTGATCGGAAGAAACTATAGAAGGTTATGCGAGATTCTTCCTGACATTGAAGAATGGGGTCAAATAGTTTTGATTGGGATCCTTTTGCGCTATGTAATTGCAAGGCATGGGTTTGTGCAGGGATCCATTATGGCTTCTTTGCATCATACAGAGAATTCTAAATCTCAGAATGATTTCTGTGACACCAATTCTGTATTAGAAGACAATGGTGACATGAGTGGTCTTCATGAGTCTGAATTAGCAAATGTTGTCTTTCGATGTTATATAGAAGGGCCAGATGAATATTTATCACGAGTGGGTTTCATGAGTAAAGATTTCTCTGAATTCAATCCACGTTTTACATCTGGAAACAATAATGAGGATGTGAAGTTCCTGCTGCGATGTACCTCACCATTGTTATGGAGTAATAATAGTGCAGTTGTACTAGCAGCTGCTGGTGTACACTGGATTATGTCACCAATGGAGGAAGTAAAAAGAATTGTTAAACCGCTCTTGTTTGTCCAAAGATCATCTACTGCCTCAAAATATGTGGTTTTGTGCAACATTCAAGTGTTTGCTAAAGCAATTCCTTCGCTCTTCTCTCCATATTTTGAAGACTTCTTCATATGCTCATCAGATTCATATCAAATTAAAGCCTTGAAACTTGATATACTATCTCACATAGCTACAGATTCATCAATTCCATTTGTTCTCAAAGAGTTTCAGGATTATATTAGAGATCCAGACAGGAGATTTGCTGCTGATACTGTTGCAGGAATTGGTATCTGTGCGCAACGACTTCCAAAAATGGCAAACACATGCTTGGAATTTCTATTGGCTTTGACCAGACAGCAAGTTATGACTGGGGAATTTGGGTCTGTGGAGGGAGAAGCAAATATTTTGATTCAAGCAATAATGTCTATTAAATCAATCGTTCAGCGAGATCCACCCAGTCATGAAAAGGTTATTATTCAGTTGGTTCGCAGTTTAAATTCGGTAAAGGTGCCTGCAGCTCGTGCAATGATTGTTTGGATGGTGGGGGAGTATAACTCTTTAGGCGATATAATTCCAAGGATGTTAACAACAGTACTCAAGTATCTTGCGAGGTGCTTTACTTCAGAAGAGTTGGAGACAAAGCTTCAAATTTGTAATACTACAGTTAAGGTTTTATTGCGTGCTGAAGGAAATGATCGGTCAACAATCCAGAAAGTTTTGAGCTATGTGCTGGAACTGGCCAAGTGTGACTTAAGCTATGATGTTCGTGACCGTGCTTATTTTCTAACGAATCTTTTGTCATCTTATCTGGATTCTCAAGGTCTGAAGGAGGAAAACATTATTCTGTCACAAAATAAAGATATTCCATGTGTCCTTGCAAAATACTTGTTTGGAGGACAAACAAAATCAAATTCACCTGAGCCCATTGATCACAGGTTTTATCTTCCTGGCTCTTTATCACAGATAGTACTTCATGCTGCTCCAGGGTATGAACCTCTTCCGAAGCCCTGTACTATGCTCTCTGATGGCCTCGAAATAAATGAATTTGGGGAGGGAGTCACTAACAGTGACACATATGTTACAGATGATCAAAATTCAGTCTCTGAGTCTTTGGATGAGGAGAATTCTTCTAGATATAGTTCACAACATTCTAATGGCAGTGGCAGTGAAGAGGATGGTTCAGCAAGTGAAGATGATGACAATTCTAACCCGTTGATTCAATTAACGGATGTTGGCAATGCCCATGAAGTGAAAAATGGAGCTTCTCAATCTGCTTCGGATTTCGGGGAATTGTTGTCAAATAGAGCTTTGGAATCATGGTTGGATGAACAGCCTGGTTTTTCGAGCTCGCATAATCCAGAACAAAGTCAAGTCCATAGATCTTCAGCAAGAATCTCCATTGGGGATATTGGAGGGCAAGTTAAACCTAAAAGCTATGCACTCTTGGACCCTGTGAATGGAAATGGCTTAAAGGTTGACTACTCATTTTCATCTGAGATTTCAGACATCTCTCCTCTTTTTATATGTATAGAAGTTTCCTTCAAGAATTGTTCAAACGAGATCATGTCTGATATATATTTGGTTGACGAGGAATCTGACAAAGGCACAGACTCTGGAGACCAAACTTCGGTTACGCATGAAAGCTCCATGATATCTCAAAATAATGCGTCAAATCTAGCTTCTGTAGAAGAGATCACTTCTCTGGAATCTGGTCAAACTGTGACAAGAATCATCCAAGTTCGCTTCCATCACCACCTCTTGCCTCTAAAACTCACCTTATATTGTAATGGCAAGAAGCTTCCTGTTAAGTTGAGGCCTGACATTGGATACTTTGTAAGAGCTCTTCCTTTGGATGTTGATGCCTTCACAATTAAGGAGTCTCATCTGCGAGGAATGTTTGAATGCACAAGAAGGTGCAATTTCATTGATCACATTGAGGATCTAGACAAGAACAAGGGAGACAAGTCTTTGGTAGAAGACAAATTTCTTGTAATCTGCCGAAGTCTTGCGTTGAAGATGCTTAGCAATGCGAATCTGTATCTTGTATCTGTTGACATGCCGGTTGCAGCAAAACTTGACGATGCAACAGGTTTGTGCTTACGTTTCAGCAGCAAGCTCTTGAGCACCTCAGTCCCGTGCTTAATTACCATTACTGTAGAAGGTAGATGTTCTGAACCACTTGAACTGACAGTCAAAGTGAACTGTGAAGAAACTGTCTTCGGGTTAAATCTGTTGAACAGAATTGTGAATTTTCTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1122

Amino Acids

124.15

Weight (kDa)

5.15

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adaptin_N PF01602 40 - 637 1.1e-98 Adaptin N terminal region
Cnd1 PF12717 120 - 248 8.5e-13 non-SMC mitotic condensation complex subunit 1
AP3B1_C PF14796 827 - 904 1e-07 Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 105, 198
Acc16I TGCGCA 1 cut(s) 1404
Acc36I ACCTGC 1 cut(s) 282
AccB1I GGYRCC 3 cut(s) 17, 68, 1615
AccBSI CCGCTC 1 cut(s) 1123
AccI GTMKAC 2 cut(s) 47, 524
AccIII TCCGGA 1 cut(s) 60
AciI CCGC 3 cut(s) 24, 597, 1121
AcoI YGGCCR 1 cut(s) 1845
AcuI CTGAAG 4 cut(s) 1713, 1812, 1952, 2475
AcyI GRCGYC 5 cut(s) 18, 44, 75, 102, 195
AfaI GTAC 7 cut(s) 272, 1018, 1056, 1074, 1701, 2076, 2119
AfiI CCNNNNNNNGG 5 cut(s) 14, 390, 2564, 2734, 2930
AflII CTTAAG 1 cut(s) 1858
AjnI CCWGG 4 cut(s) 183, 2053, 2089, 2440
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AloI GAACNNNNNNTCC 2 cut(s) 986, 1018
Alw21I GWGCWC 3 cut(s) 2456, 2950, 3233
Alw26I GTCTC 8 cut(s) 170, 202, 636, 1736, 2212, 2718, 2991, 3060
AlwNI CAGNNNCTG 4 cut(s) 244, 1067, 2210, 2720
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 4 cut(s) 905, 1845, 2134, 2921
ArsI GACNNNNNNTTYG 6 cut(s) 116, 148, 1349, 1381, 1889, 1921
AseI ATTAAT 1 cut(s) 321
Asp700I GAANNNNTTC 2 cut(s) 806, 2103
AspLEI GCGC 5 cut(s) 20, 376, 513, 723, 1405
AspS9I GGNCC 2 cut(s) 905, 2554
AsuHPI GGTGA 7 cut(s) 373, 854, 1014, 1080, 2013, 2849, 2872
AsuII TTCGAA 1 cut(s) 469
AvaII GGWCC 1 cut(s) 2554
AxyI CCTNAGG 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 1691, 1724
BalI TGGCCA 1 cut(s) 1847
BamHI GGATCC 4 cut(s) 346, 393, 711, 755
BanI GGYRCC 3 cut(s) 17, 68, 1615
BanII GRGCYC 3 cut(s) 2031, 2456, 2950
BarI GAAGNNNNNNTAC 4 cut(s) 248, 280, 2934, 2966
BauI CACGAG 2 cut(s) 924, 1626
BbsI GAAGAC 6 cut(s) 105, 840, 848, 1233, 3090, 3316
Bbv12I GWGCWC 3 cut(s) 2456, 2950, 3233
BccI CCATC 4 cut(s) 1639, 2126, 2276, 2862
BcgI CGANNNNNNTGC 2 cut(s) 1185, 1219
BciT130I CCWGG 4 cut(s) 185, 2055, 2091, 2442
BciVI GTATCC 1 cut(s) 2927
BclI TGATCA 3 cut(s) 2035, 2194, 3034
BcoDI GTCTC 8 cut(s) 170, 202, 636, 1736, 2212, 2718, 2991, 3060
BfaI CTAG 7 cut(s) 260, 341, 447, 1058, 2238, 2783, 3050
BfmI CTRYAG 6 cut(s) 649, 1299, 1620, 1767, 2790, 3261
BfoI RGCGCY 2 cut(s) 21, 377
BfrI CTTAAG 1 cut(s) 1858
BfuAI ACCTGC 1 cut(s) 282
BfuI GTATCC 1 cut(s) 2927
BglII AGATCT 1 cut(s) 2486
BlpI GCTNAGC 1 cut(s) 3128
BmcAI AGTACT 2 cut(s) 1701, 2076
Bme1390I CCNGG 4 cut(s) 185, 2055, 2091, 2442
Bme18I GGWCC 1 cut(s) 2554
BmgT120I GGNCC 2 cut(s) 905, 2554
BmiI GGNNCC 8 cut(s) 19, 70, 348, 395, 713, 757, 1617, 2556
BmrFI CCNGG 4 cut(s) 185, 2055, 2091, 2442
BmrI ACTGGG 2 cut(s) 1485, 1557
BmsI GCATC 5 cut(s) 117, 784, 2956, 3114, 3178
BmuI ACTGGG 2 cut(s) 1485, 1557
BpiI GAAGAC 6 cut(s) 105, 840, 848, 1233, 3090, 3316
BplI GAGNNNNNCTC 2 cut(s) 1646, 1678
BpmI CTGGAG 2 cut(s) 2073, 2742
Bpu10I CCTNAGC 2 cut(s) 495, 2025
Bpu1102I GCTNAGC 1 cut(s) 3128
Bpu14I TTCGAA 1 cut(s) 469
BpuEI CTTGAG 3 cut(s) 1688, 1908, 3247
Bsa29I ATCGAT 1 cut(s) 317
BsaBI GATNNNNATC 2 cut(s) 710, 1254
BsaHI GRCGYC 5 cut(s) 18, 44, 75, 102, 195
BsaI GGTCTC 1 cut(s) 2718
BsaJI CCNNGG 5 cut(s) 183, 184, 384, 1682, 2090
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 2511, 2541
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 390, 2564, 2734, 2930
Bse118I RCCGGY 2 cut(s) 530, 3166
Bse1I ACTGG 5 cut(s) 249, 1082, 1480, 1563, 1848
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 3 cut(s) 1638, 2350, 3139
Bse8I GATNNNNATC 2 cut(s) 710, 1254
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 4 cut(s) 185, 2055, 2091, 2442
BseCI ATCGAT 1 cut(s) 317
BseDI CCNNGG 5 cut(s) 183, 184, 384, 1682, 2090
BseGI GGATG 9 cut(s) 1000, 1650, 1692, 2227, 2287, 2341, 2437, 2838, 2965
BseJI GATNNNNATC 2 cut(s) 710, 1254
BseLI CCNNNNNNNGG 5 cut(s) 14, 390, 2564, 2734, 2930
BseMI GCAATG 3 cut(s) 1638, 2350, 3139
BseMII CTCAG 9 cut(s) 26, 227, 251, 302, 812, 2016, 2202, 2592, 3249
BseNI ACTGG 5 cut(s) 249, 1082, 1480, 1563, 1848
BseRI GAGGAG 5 cut(s) 105, 110, 158, 2240, 2610
BseYI CCCAGC 1 cut(s) 389
BsgI GTGCAG 2 cut(s) 770, 1068
BshFI GGCC 4 cut(s) 907, 1847, 2136, 2923
BshNI GGYRCC 3 cut(s) 17, 68, 1615
BshVI ATCGAT 1 cut(s) 317
BsiHKAI GWGCWC 3 cut(s) 2456, 2950, 3233
BsiSI CCGG 4 cut(s) 61, 397, 531, 3167
BslFI GGGAC 1 cut(s) 3224
BslI CCNNNNNNNGG 5 cut(s) 14, 390, 2564, 2734, 2930
BsmAI GTCTC 8 cut(s) 170, 202, 636, 1736, 2212, 2718, 2991, 3060
BsmBI CGTCTC 2 cut(s) 170, 202
BsmFI GGGAC 1 cut(s) 3224
BsmI GAATGC 1 cut(s) 3014
BsnI GGCC 4 cut(s) 907, 1847, 2136, 2923
Bso31I GGTCTC 1 cut(s) 2718
Bsp119I TTCGAA 1 cut(s) 469
Bsp1286I GDGCHC 4 cut(s) 2031, 2456, 2950, 3233
Bsp13I TCCGGA 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 1072
Bsp1720I GCTNAGC 1 cut(s) 3128
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 3 cut(s) 24, 597, 1121
BspANI GGCC 4 cut(s) 907, 1847, 2136, 2923
BspCNI CTCAG 9 cut(s) 27, 226, 250, 301, 811, 2017, 2203, 2593, 3248
BspDI ATCGAT 1 cut(s) 317
BspEI TCCGGA 1 cut(s) 60
BspHI TCATGA 3 cut(s) 859, 936, 1567
BspLI GGNNCC 8 cut(s) 19, 70, 348, 395, 713, 757, 1617, 2556
BspMAI CTGCAG 1 cut(s) 1624
BspMI ACCTGC 1 cut(s) 282
BspQI GCTCTTC 2 cut(s) 1214, 2955
BspT104I TTCGAA 1 cut(s) 469
BspT107I GGYRCC 3 cut(s) 17, 68, 1615
BspTI CTTAAG 1 cut(s) 1858
BspTNI GGTCTC 1 cut(s) 2718
BsrBI CCGCTC 1 cut(s) 1123
BsrDI GCAATG 3 cut(s) 1638, 2350, 3139
BsrFI RCCGGY 2 cut(s) 530, 3166
BsrGI TGTACA 1 cut(s) 1072
BsrI ACTGG 5 cut(s) 249, 1082, 1480, 1563, 1848
BssAI RCCGGY 2 cut(s) 530, 3166
BssECI CCNNGG 5 cut(s) 183, 184, 384, 1682, 2090
BssNAI GTATAC 1 cut(s) 525
BssNI GRCGYC 5 cut(s) 18, 44, 75, 102, 195
BssSI CACGAG 2 cut(s) 924, 1626
BssT1I CCWWGG 2 cut(s) 384, 1682
Bst1107I GTATAC 1 cut(s) 525
Bst2BI CACGAG 2 cut(s) 924, 1626
Bst2UI CCWGG 4 cut(s) 185, 2055, 2091, 2442
Bst6I CTCTTC 8 cut(s) 534, 613, 1214, 1728, 2109, 2271, 2790, 2955
BstACI GRCGYC 5 cut(s) 18, 44, 75, 102, 195
BstAFI CTTAAG 1 cut(s) 1858
BstAPI GCANNNNNTGC 1 cut(s) 1628
BstAUI TGTACA 1 cut(s) 1072
BstBI TTCGAA 1 cut(s) 469
BstC8I GCNNGC 5 cut(s) 381, 1620, 1788, 2456, 3221
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 9 cut(s) 1000, 1650, 1692, 2227, 2287, 2341, 2437, 2838, 2965
BstH2I RGCGCY 2 cut(s) 21, 377
BstHHI GCGC 5 cut(s) 20, 376, 513, 723, 1405
BstMAI GTCTC 8 cut(s) 170, 202, 636, 1736, 2212, 2718, 2991, 3060
BstMWI GCNNNNNNNGC 6 cut(s) 179, 380, 485, 596, 599, 1628
BstNI CCWGG 4 cut(s) 185, 2055, 2091, 2442
BstNSI RCATGY 3 cut(s) 407, 1434, 3166
BstSCI CCNGG 4 cut(s) 183, 2053, 2089, 2440
BstSFI CTRYAG 6 cut(s) 649, 1299, 1620, 1767, 2790, 3261
BstV2I GAAGAC 6 cut(s) 105, 840, 848, 1233, 3090, 3316
BstXI CCANNNNNNTGG 1 cut(s) 1032
BstZ17I GTATAC 1 cut(s) 525
Bsu15I ATCGAT 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 213
BsuI GTATCC 1 cut(s) 2927
BsuRI GGCC 4 cut(s) 907, 1847, 2136, 2923
BsuTUI ATCGAT 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 384
BtgZI GCGATG 3 cut(s) 94, 163, 1027
BtsCI GGATG 9 cut(s) 1000, 1650, 1692, 2227, 2287, 2341, 2437, 2838, 2965
BtsI GCAGTG 2 cut(s) 2272, 2278
BtsIMutI CAGTG 5 cut(s) 242, 1075, 2179, 2272, 2278
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 5 cut(s) 381, 1620, 1788, 2456, 3221
CaiI CAGNNNCTG 4 cut(s) 244, 1067, 2210, 2720
CciI TCATGA 3 cut(s) 859, 936, 1567
CfoI GCGC 5 cut(s) 20, 376, 513, 723, 1405
Cfr10I RCCGGY 2 cut(s) 530, 3166
Cfr13I GGNCC 2 cut(s) 905, 2554
ClaI ATCGAT 1 cut(s) 317
CseI GACGC 4 cut(s) 33, 83, 284, 2763
Csp6I GTAC 7 cut(s) 271, 1017, 1055, 1073, 1700, 2075, 2118
CspCI CAANNNNNGTGG 2 cut(s) 1143, 1178
CviQI GTAC 7 cut(s) 271, 1017, 1055, 1073, 1700, 2075, 2118
DinI GGCGCC 1 cut(s) 19
DraI TTTAAA 1 cut(s) 1602
EaeI YGGCCR 1 cut(s) 1845
Eam1104I CTCTTC 8 cut(s) 534, 613, 1214, 1728, 2109, 2271, 2790, 2955
EarI CTCTTC 8 cut(s) 534, 613, 1214, 1728, 2109, 2271, 2790, 2955
Ecl136II GAGCTC 2 cut(s) 2454, 2948
Eco130I CCWWGG 2 cut(s) 384, 1682
Eco147I AGGCCT 1 cut(s) 2923
Eco24I GRGCYC 3 cut(s) 2031, 2456, 2950
Eco31I GGTCTC 1 cut(s) 2718
Eco32I GATATC 1 cut(s) 2760
Eco47I GGWCC 1 cut(s) 2554
Eco53kI GAGCTC 2 cut(s) 2454, 2948
Eco57I CTGAAG 4 cut(s) 1713, 1812, 1952, 2475
Eco81I CCTNAGG 1 cut(s) 213
EcoICRI GAGCTC 2 cut(s) 2454, 2948
EcoRI GAATTC 3 cut(s) 787, 956, 2230
EcoRII CCWGG 4 cut(s) 183, 2053, 2089, 2440
EcoRV GATATC 1 cut(s) 2760
EcoT14I CCWWGG 2 cut(s) 384, 1682
EcoT38I GRGCYC 3 cut(s) 2031, 2456, 2950
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
ErhI CCWWGG 2 cut(s) 384, 1682
Esp3I CGTCTC 2 cut(s) 170, 202
FalI AAGNNNNNCTT 2 cut(s) 1841, 1873
FaqI GGGAC 1 cut(s) 3224
FauNDI CATATG 2 cut(s) 1238, 2182
FbaI TGATCA 3 cut(s) 2035, 2194, 3034
FblI GTMKAC 2 cut(s) 47, 524
FokI GGATG 9 cut(s) 1007, 1657, 1699, 2234, 2294, 2348, 2444, 2825, 2972
FriOI GRGCYC 3 cut(s) 2031, 2456, 2950
FspBI CTAG 7 cut(s) 260, 341, 447, 1058, 2238, 2783, 3050
FspI TGCGCA 1 cut(s) 1404
GlaI GCGC 5 cut(s) 19, 375, 512, 722, 1404
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 2 cut(s) 2073, 2742
HaeII RGCGCY 2 cut(s) 21, 377
HaeIII GGCC 4 cut(s) 907, 1847, 2136, 2923
HapII CCGG 4 cut(s) 61, 397, 531, 3167
HgaI GACGC 4 cut(s) 33, 83, 284, 2763
HhaI GCGC 5 cut(s) 20, 376, 513, 723, 1405
Hin1I GRCGYC 5 cut(s) 18, 44, 75, 102, 195
Hin6I GCGC 5 cut(s) 18, 374, 511, 721, 1403
HinP1I GCGC 5 cut(s) 18, 374, 511, 721, 1403
HincII GTYRAC 6 cut(s) 48, 1692, 1809, 2584, 2692, 3160
HindII GTYRAC 6 cut(s) 48, 1692, 1809, 2584, 2692, 3160
HindIII AAGCTT 2 cut(s) 1748, 2903
HpaI GTTAAC 1 cut(s) 1692
HpaII CCGG 4 cut(s) 61, 397, 531, 3167
HphI GGTGA 7 cut(s) 373, 854, 1014, 1080, 2013, 2849, 2872
Hpy99I CGWCG 4 cut(s) 49, 77, 92, 197
HpyCH4IV ACGT 6 cut(s) 102, 163, 195, 228, 967, 3208
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 380, 485, 596, 599, 1628
HpySE526I ACGT 6 cut(s) 102, 163, 195, 228, 967, 3208
Hsp92I GRCGYC 5 cut(s) 18, 44, 75, 102, 195
HspAI GCGC 5 cut(s) 18, 374, 511, 721, 1403
KasI GGCGCC 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 60
Ksp22I TGATCA 3 cut(s) 2035, 2194, 3034
KspAI GTTAAC 1 cut(s) 1692
LguI GCTCTTC 2 cut(s) 1214, 2955
LmnI GCTCC 5 cut(s) 118, 587, 2092, 2366, 2756
LweI GCATC 5 cut(s) 117, 784, 2956, 3114, 3178
MaeI CTAG 7 cut(s) 260, 341, 447, 1058, 2238, 2783, 3050
MaeII ACGT 6 cut(s) 102, 163, 195, 228, 967, 3208
MbiI CCGCTC 1 cut(s) 1123
MhlI GDGCHC 4 cut(s) 2031, 2456, 2950, 3233
MlsI TGGCCA 1 cut(s) 1847
MluNI TGGCCA 1 cut(s) 1847
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 7 cut(s) 131, 229, 872, 2172, 2222, 2711, 2993
MmeI TCCRAC 4 cut(s) 565, 644, 1719, 2409
Mox20I TGGCCA 1 cut(s) 1847
MroI TCCGGA 1 cut(s) 60
MroXI GAANNNNTTC 2 cut(s) 806, 2103
MscI TGGCCA 1 cut(s) 1847
MslI CAYNNNNRTG 3 cut(s) 1030, 1181, 2259
Msp20I TGGCCA 1 cut(s) 1847
MspA1I CMGCKG 2 cut(s) 599, 1064
MspCI CTTAAG 1 cut(s) 1858
MspI CCGG 4 cut(s) 61, 397, 531, 3167
MspR9I CCNGG 4 cut(s) 185, 2055, 2091, 2442
Mva1269I GAATGC 1 cut(s) 3014
MvaI CCWGG 4 cut(s) 185, 2055, 2091, 2442
MwoI GCNNNNNNNGC 6 cut(s) 179, 380, 485, 596, 599, 1628
NarI GGCGCC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 384
NdeI CATATG 2 cut(s) 1238, 2182
NlaIV GGNNCC 8 cut(s) 19, 70, 348, 395, 713, 757, 1617, 2556
NsbI TGCGCA 1 cut(s) 1404
NspI RCATGY 3 cut(s) 407, 1434, 3166
NspV TTCGAA 1 cut(s) 469
PagI TCATGA 3 cut(s) 859, 936, 1567
PasI CCCWGGG 1 cut(s) 184
PceI AGGCCT 1 cut(s) 2923
PciSI GCTCTTC 2 cut(s) 1214, 2955
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 3014
PdmI GAANNNNTTC 2 cut(s) 806, 2103
PflFI GACNNNGTC 1 cut(s) 238
PleI GAGTC 7 cut(s) 131, 229, 871, 2171, 2221, 2711, 2992
PluTI GGCGCC 1 cut(s) 21
PpsI GAGTC 7 cut(s) 131, 229, 871, 2171, 2221, 2711, 2992
PshBI ATTAAT 1 cut(s) 321
Psp124BI GAGCTC 2 cut(s) 2456, 2950
Psp6I CCWGG 4 cut(s) 183, 2053, 2089, 2440
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 4 cut(s) 183, 2053, 2089, 2440
PspN4I GGNNCC 8 cut(s) 19, 70, 348, 395, 713, 757, 1617, 2556
PspPI GGNCC 2 cut(s) 905, 2554
PstI CTGCAG 1 cut(s) 1624
PstNI CAGNNNCTG 4 cut(s) 244, 1067, 2210, 2720
PsyI GACNNNGTC 1 cut(s) 238
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 7 cut(s) 272, 1018, 1056, 1074, 1701, 2076, 2119
RsaNI GTAC 7 cut(s) 271, 1017, 1055, 1073, 1700, 2075, 2118
RseI CAYNNNNRTG 3 cut(s) 1030, 1181, 2259
SacI GAGCTC 2 cut(s) 2456, 2950
SalI GTCGAC 1 cut(s) 46
SapI GCTCTTC 2 cut(s) 1214, 2955
Sau96I GGNCC 2 cut(s) 905, 2554
ScaI AGTACT 2 cut(s) 1701, 2076
SchI GAGTC 7 cut(s) 131, 229, 872, 2172, 2222, 2711, 2993
ScrFI CCNGG 4 cut(s) 185, 2055, 2091, 2442
SduI GDGCHC 4 cut(s) 2031, 2456, 2950, 3233
SfaNI GCATC 5 cut(s) 117, 784, 2956, 3114, 3178
SfcI CTRYAG 6 cut(s) 649, 1299, 1620, 1767, 2790, 3261
SfoI GGCGCC 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 469
SinI GGWCC 1 cut(s) 2554
SmiMI CAYNNNNRTG 3 cut(s) 1030, 1181, 2259
SmlI CTYRAG 4 cut(s) 1703, 1858, 1923, 3226
SmoI CTYRAG 4 cut(s) 1703, 1858, 1923, 3226
SseBI AGGCCT 1 cut(s) 2923
SsiI CCGC 3 cut(s) 24, 597, 1121
SspDI GGCGCC 1 cut(s) 17
SspI AATATT 2 cut(s) 917, 1510
SspMI CTAG 7 cut(s) 260, 341, 447, 1058, 2238, 2783, 3050
SstI GAGCTC 2 cut(s) 2456, 2950
StuI AGGCCT 1 cut(s) 2923
StyD4I CCNGG 4 cut(s) 183, 2053, 2089, 2440
StyI CCWWGG 2 cut(s) 384, 1682
TaiI ACGT 6 cut(s) 105, 166, 198, 231, 970, 3211
TaqI TCGA 9 cut(s) 47, 123, 135, 192, 317, 469, 889, 2139, 2450
TaqII GACCGA 1 cut(s) 1794
TatI WGTACW 5 cut(s) 1054, 1072, 1699, 2074, 2117
TauI GCSGC 1 cut(s) 599
TscAI CASTG 5 cut(s) 249, 1082, 2179, 2272, 2278
TspGWI ACGGA 2 cut(s) 444, 2348
TspRI CASTG 5 cut(s) 249, 1082, 2179, 2272, 2278
Tth111I GACNNNGTC 1 cut(s) 238
Vha464I CTTAAG 1 cut(s) 1858
VpaK11BI GGWCC 1 cut(s) 2554
VspI ATTAAT 1 cut(s) 321
XbaI TCTAGA 2 cut(s) 2237, 3049
XceI RCATGY 3 cut(s) 407, 1434, 3166
XmiI GTMKAC 2 cut(s) 47, 524
XmnI GAANNNNTTC 2 cut(s) 806, 2103
XspI CTAG 7 cut(s) 260, 341, 447, 1058, 2238, 2783, 3050
ZraI GACGTC 2 cut(s) 103, 196
ZrmI AGTACT 2 cut(s) 1701, 2076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.