Rh7DG420600

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
59381236 .. 59390642
9407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG420600.1

Sequence Viewer

Length: 2958 bp
ATGCTAGTTTATGAATTTCAGATGCCCGCCTTTGATATTAATGCATGTCTTGCTGGTTGTTGTGACATGCAGGCTGCGAAAGAATTGATAAGCATCAATTTAAGTTCCTGTAAAAATCTTAAGGAAATCCCCCTCTGCACTGATGCGCCGAAGGTTCAGAAACTAATTCTTAACTATTGTACAAGTTTAGTGGAGGTTTCCCCATCCATTTCAGCTCTTACAGGCCTTGTTTTCTTGAGTTTACATGGTTGCACTGAACTTAAGAGTCTTCCAAGCAACATTCATATGATGAAATTTCTCAAGACCCTTGTTCTTTCCGGCTGCTCAAATCTTGAGATGTTTCCCGAGATTTCAGAAGATATGGAGGCACTATCGGAGCTTAGGTTAGATCGCACTGCGATTAAGAAACTACCATCCTCAATTGAACGGCTTCGGGGACTTAAATCCCTTGATCTTTACGGCTGCTCAAATCTTGAGATGTTTCCCGAGATTTCAGAAGATATGGGGGCACTATCGGAGCTTATGTTAGATGGCAGTGCAATTAAGGAAATACCATCCTCAATTGAACGGCTTCGGGGACTTAAATCATTAAGTATGAAAAACTGCACAAGCCTTGTCTGTCTTCCGGACAGTATCTGTAATTTGGCAGACCTTATATATCTCTACCTCGAAGGGTGCTCAAAACTTTGCAACTTGCCTGAGAATTTGGGGAATTTAAAATATCTGTGTGAACTTAAAGTAGATGATACTGGAATAAAACGACTCCCGGCCTGTATCTTACATTTGAAGCTTGGAAGATTAAAGTTTCATTATTGCAAACAAATGGAAGCCCCCCTTTCATCATGGCCATCATCGATTGAAGATTGTTGTACTGTTGTGGTGCATCTTGATTTTAGTTATTGCAATCTGAAGGTGTTATCGGATGCCATTGCTTATTTTCGTTCATTAAAAGTATTGAATTTGTCAAGAAATAACAATCTGAAGAGCTTGCCTGCAGCCATGAATCAACTGGGTTACTTAGAACGGCTTCAATTGGAAGATTGCAAGAGACTGAGATCAATACCAGAGCTTTCATCAAGAATAAGTTACATAAATGCGCATAATTGCACAGCTTTGGAAGCTGTTTCAACACCACAGTCTCCCTACGATATCGGTCGATGCTTCATATTTTCTAATTGCAGTCAGCTGATACAGAAAGATTTTTTCAGAGATATTGTAGAAACTCATTTCCCTCCTCAGGGTAATTGTTCCCGACCCTTTTATTTCTCCATTCCTAGAACTGAAATTCCAGAGCAGTTCATCCATCAGGGTAGGGGGTCTTCCGTAACTGCCCAGCTACCACAAAATTGGTTTCACAGCAACAAGTTTTTGGGGTTCGCTATTTGCGGGGTTACTAATCAGCCCCAGGGTGTTGATTATTGGAAACTGTCTGCTCGATGTTTCTTTACCTTCAAAGGAGATCATTGCGAGTACCGTTTCAGTTTCTCTTTGTTCAATATTTATTTTGACGGTTTCTACCGCGACTGGCTTGTGTCAAATCACATGTTAGTGGGATATGTGCCATGGTCTGAATTTGGCATTAATGGAGAGGAAGTGAATGAACGCCATTACACTGAGGCCAAATTTGAGATAGAATTATTGCACTGTGAAACATTGGAGGAAGACGGGGTACTATTCCACCCCAGCATCGAAAGGTGTGACCCTTGCATCGAAAGGTGTGGAGTTCGATTCGTTTTTGCCAACAACGAGGATGAGGAAGTTGCCCATCAAGATTTTGGGGAACCAATGGTACAAGGTGATAATTCTGAGATCAGGAGCCTTGAGGGCTGCTCAGCTGAACGCAGTGGTAGTGACATCACAAGTGACACCTCTGATGAGGAGGAGCAATACCTTAAATTATCGGAAGTTTTTGAAGGTGCAAACAGAGAACCGAGTTACATCAGAAATGAGGACAATGAATCATCTCGGAAGAGGAAAACTCTGGAAAGTTGGACACAAGAAGTCAGAGTTACATCGGGTCTGATGCAAGGGGACCTGGATGATGGTTTTAACTGGTTCTGCCATAACAGACATTTAATCCCTGACAAAGGAACTACGGATTTAAGATGCGGGTATGTTTGTACACATCGACCCGGCTGTTGGGCCAGAGCTAATGTGCGATCTTTCATTGACGACCTAACAATCCTTGAAATTACTTACATTGGGAGGCATACTTGTTGGAAAACTCTTCCAATGCCAATGTTGACACACCAAGTAAGAGTTACAACAGGTATGGAGACTGAAGTTCCTTCTGATGGCTTTAGGTGGGTGAAGTATGCCCAAACAGACATACCAGGAGCTAAATCCCCAAGAGTCTATTATGTATGCGCTCCTCAAAATGTCGGAGGCTGCATGGCAATAAAGGAAGTACAGCGCTCCAATGATAAAGAAATTCTTAAAATTACTTACAGAGGAAGGCACACTTGTACACTAGCCTCCACCAGCAATGGAGGAAGGGTAGATAGCAGTACCTCCGTGGCCAATGGTGCATCGAGTGTTCATGATCAAGTTGTCCAATCACCAAGCTCACCAGTAGCCAATGGTCATGGAGGAAATGTAACCAGAGTAGCCGACAATCCTGTGAATGACAACAATATGATCATGTTACGAGATGCAAGCTCACAGGATATGGAACCGACACCCTCAAATGTTGCAAGTGTTTCATCTCAACCAGTGATCTCATCACCATCTCTGACTCAAGTTAACCTTCAACCTCAGTCTTGTTCGCAGCCCATTGTTATAAGATCATCTCCTAATTCCAGAACAATTGTATGCCCCAACACAGGGATGTTAATGAAGACCAAGTCAGTAGCACATAAGGCTAAACCCATGCCTAAACCTGTGACAAAAACCAGCACAAGAGCAAGAGCCCAACAAGGACCAAAGCAGGATTCCGACAAGAAAATGTGGAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

985

Amino Acids

110.47

Weight (kDa)

6.05

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 55 - 174 2.8e-08 Leucine-rich repeat region
LRR_13 PF23286 146 - 229 3.5e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 174 - 229 8.5e-06 Leucine-rich repeat region
LRR_14 PF23598 211 - 274 2.1e-07 Leucine-rich repeat region
C-JID PF20160 425 - 582 1.6e-15 C-JID domain
WRKY PF03106 680 - 739 1.8e-06 WRKY DNA -binding domain
WRKY PF03106 765 - 822 2.3e-17 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2780
Acc16I TGCGCA 1 cut(s) 1098
AccII CGCG 1 cut(s) 1521
AccIII TCCGGA 1 cut(s) 625
AciI CCGC 4 cut(s) 27, 1386, 1519, 2109
AcoI YGGCCR 2 cut(s) 845, 2517
AcsI RAATTY 9 cut(s) 14, 293, 703, 712, 958, 1284, 1571, 1622, 2430
AcuI CTGAAG 3 cut(s) 929, 1001, 2301
AfaI GTAC 9 cut(s) 181, 871, 1472, 1671, 1791, 2122, 2409, 2467, 2509
AfeI AGCGCT 1 cut(s) 2414
AfiI CCNNNNNNNGG 7 cut(s) 1237, 1238, 2087, 2139, 2294, 2822, 2823
AflII CTTAAG 2 cut(s) 119, 260
AflIII ACRYGT 1 cut(s) 1542
AjnI CCWGG 3 cut(s) 1404, 2034, 2332
AjuI GAANNNNNNNTTGG 2 cut(s) 2914, 2946
AloI GAACNNNNNNTCC 2 cut(s) 1270, 1302
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 3 cut(s) 1042, 1143, 2270
AlwNI CAGNNNCTG 1 cut(s) 636
Ama87I CYCGRG 2 cut(s) 344, 485
Aor13HI TCCGGA 1 cut(s) 625
Aor51HI AGCGCT 1 cut(s) 2414
AoxI GGCC 6 cut(s) 223, 768, 845, 1617, 2142, 2517
ApeKI GCWGC 7 cut(s) 74, 321, 462, 995, 1827, 2388, 2767
ApoI RAATTY 9 cut(s) 14, 293, 703, 712, 958, 1284, 1571, 1622, 2430
AseI ATTAAT 2 cut(s) 39, 1581
Asp700I GAANNNNTTC 3 cut(s) 429, 570, 1026
AspLEI GCGC 4 cut(s) 148, 1099, 2369, 2415
AspS9I GGNCC 3 cut(s) 2032, 2142, 2918
AsuC2I CCSGG 2 cut(s) 767, 2133
AsuHPI GGTGA 5 cut(s) 1808, 2320, 2550, 2559, 2715
AvaI CYCGRG 2 cut(s) 344, 485
AvaII GGWCC 2 cut(s) 2032, 2918
AxyI CCTNAGG 1 cut(s) 1236
BaeGI GKGCMC 1 cut(s) 511
BalI TGGCCA 2 cut(s) 847, 2519
BanII GRGCYC 1 cut(s) 2911
BarI GAAGNNNNNNTAC 4 cut(s) 1303, 1335, 1653, 1685
BbsI GAAGAC 5 cut(s) 260, 614, 1311, 1668, 2843
Bbv12I GWGCWC 1 cut(s) 680
BbvI GCAGC 7 cut(s) 61, 308, 449, 1007, 1814, 2375, 2779
BceAI ACGGC 4 cut(s) 443, 475, 584, 1040
BciT130I CCWGG 3 cut(s) 1406, 2036, 2334
BclI TGATCA 2 cut(s) 2542, 2637
BcnI CCSGG 2 cut(s) 767, 2133
BcoDI GTCTC 3 cut(s) 1042, 1143, 2270
BfaI CTAG 3 cut(s) 5, 1275, 2471
BfmI CTRYAG 1 cut(s) 993
BfoI RGCGCY 1 cut(s) 2416
BfrI CTTAAG 2 cut(s) 119, 260
BglI GCCNNNNNGGC 1 cut(s) 1824
BisI GCNGC 7 cut(s) 75, 322, 463, 996, 1828, 2389, 2768
BlpI GCTNAGC 1 cut(s) 1831
BlsI GCNGC 7 cut(s) 76, 323, 464, 997, 1829, 2390, 2769
Bme1390I CCNGG 5 cut(s) 767, 1406, 2036, 2133, 2334
Bme18I GGWCC 2 cut(s) 2032, 2918
BmeT110I CYCGRG 2 cut(s) 344, 485
BmgT120I GGNCC 3 cut(s) 2032, 2142, 2918
BmiI GGNNCC 4 cut(s) 1782, 1817, 2033, 2673
BmrFI CCNGG 5 cut(s) 767, 1406, 2036, 2133, 2334
BmrI ACTGGG 1 cut(s) 1019
BmuI ACTGGG 1 cut(s) 1019
BpiI GAAGAC 5 cut(s) 260, 614, 1311, 1668, 2843
BplI GAGNNNNNCTC 4 cut(s) 1814, 1846, 1963, 1995
Bpu10I CCTNAGC 1 cut(s) 380
Bpu1102I GCTNAGC 1 cut(s) 1831
BpuEI CTTGAG 6 cut(s) 256, 284, 353, 494, 1841, 2721
BpuMI CCSGG 2 cut(s) 767, 2133
Bsa29I ATCGAT 1 cut(s) 854
BsaBI GATNNNNATC 1 cut(s) 92
BsaJI CCNNGG 4 cut(s) 1404, 1405, 1562, 2514
BsaWI WCCGGW 1 cut(s) 625
Bsc4I CCNNNNNNNGG 7 cut(s) 1237, 1238, 2087, 2139, 2294, 2822, 2823
Bse1I ACTGG 6 cut(s) 754, 1014, 1529, 2057, 2570, 2711
Bse21I CCTNAGG 1 cut(s) 1236
Bse3DI GCAATG 3 cut(s) 927, 1462, 2491
Bse8I GATNNNNATC 1 cut(s) 92
BseAI TCCGGA 1 cut(s) 625
BseBI CCWGG 3 cut(s) 1406, 2036, 2334
BseCI ATCGAT 1 cut(s) 854
BseDI CCNNGG 4 cut(s) 1404, 1405, 1562, 2514
BseGI GGATG 8 cut(s) 203, 413, 554, 928, 1299, 1756, 2044, 2832
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 7 cut(s) 1237, 1238, 2087, 2139, 2294, 2822, 2823
BseMI GCAATG 3 cut(s) 927, 1462, 2491
BseMII CTCAG 7 cut(s) 690, 1043, 1250, 1605, 1797, 1845, 2768
BseNI ACTGG 6 cut(s) 754, 1014, 1529, 2057, 2570, 2711
BseRI GAGGAG 4 cut(s) 1224, 1892, 1895, 2361
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 7 cut(s) 61, 308, 449, 1007, 1814, 2375, 2779
BseYI CCCAGC 2 cut(s) 1332, 1682
BsgI GTGCAG 2 cut(s) 121, 589
Bsh1236I CGCG 1 cut(s) 1521
Bsh1285I CGRYCG 1 cut(s) 1156
BshFI GGCC 6 cut(s) 225, 770, 847, 1619, 2144, 2519
BshVI ATCGAT 1 cut(s) 854
BsiEI CGRYCG 1 cut(s) 1156
BsiHKAI GWGCWC 1 cut(s) 680
BsiHKCI CYCGRG 2 cut(s) 344, 485
BsiSI CCGG 4 cut(s) 318, 626, 767, 2133
BslFI GGGAC 3 cut(s) 450, 591, 2045
BslI CCNNNNNNNGG 7 cut(s) 1237, 1238, 2087, 2139, 2294, 2822, 2823
BsmAI GTCTC 3 cut(s) 1042, 1143, 2270
BsmFI GGGAC 3 cut(s) 450, 591, 2045
BsnI GGCC 6 cut(s) 225, 770, 847, 1619, 2144, 2519
BsoBI CYCGRG 2 cut(s) 344, 485
Bsp1286I GDGCHC 3 cut(s) 511, 680, 2911
Bsp13I TCCGGA 1 cut(s) 625
Bsp1407I TGTACA 3 cut(s) 179, 2120, 2465
Bsp1720I GCTNAGC 1 cut(s) 1831
Bsp19I CCATGG 1 cut(s) 1562
BspACI CCGC 4 cut(s) 27, 1386, 1519, 2109
BspANI GGCC 6 cut(s) 225, 770, 847, 1619, 2144, 2519
BspCNI CTCAG 7 cut(s) 691, 1044, 1249, 1606, 1798, 1844, 2767
BspDI ATCGAT 1 cut(s) 854
BspEI TCCGGA 1 cut(s) 625
BspFNI CGCG 1 cut(s) 1521
BspHI TCATGA 1 cut(s) 2539
BspLI GGNNCC 4 cut(s) 1782, 1817, 2033, 2673
BspMAI CTGCAG 1 cut(s) 997
BspQI GCTCTTC 1 cut(s) 977
BspTI CTTAAG 2 cut(s) 119, 260
BsrDI GCAATG 3 cut(s) 927, 1462, 2491
BsrGI TGTACA 3 cut(s) 179, 2120, 2465
BsrI ACTGG 6 cut(s) 754, 1014, 1529, 2057, 2570, 2711
BssECI CCNNGG 4 cut(s) 1404, 1405, 1562, 2514
BssT1I CCWWGG 1 cut(s) 1562
Bst2UI CCWGG 3 cut(s) 1406, 2036, 2334
Bst4CI ACNGT 7 cut(s) 632, 874, 1137, 1428, 1475, 1511, 1646
Bst6I CTCTTC 3 cut(s) 977, 1964, 2232
BstAFI CTTAAG 2 cut(s) 119, 260
BstAPI GCANNNNNTGC 1 cut(s) 50
BstAUI TGTACA 3 cut(s) 179, 2120, 2465
BstC8I GCNNGC 5 cut(s) 27, 72, 989, 993, 2656
BstDEI CTNAG 9 cut(s) 380, 699, 1018, 1052, 1236, 1614, 1806, 1831, 2754
BstDSI CCRYGG 2 cut(s) 1562, 2514
BstENI CCTNNNNNAGG 1 cut(s) 2085
BstF5I GGATG 8 cut(s) 203, 413, 554, 928, 1299, 1756, 2044, 2832
BstFNI CGCG 1 cut(s) 1521
BstH2I RGCGCY 1 cut(s) 2416
BstHHI GCGC 4 cut(s) 148, 1099, 2369, 2415
BstMAI GTCTC 3 cut(s) 1042, 1143, 2270
BstMCI CGRYCG 1 cut(s) 1156
BstMWI GCNNNNNNNGC 5 cut(s) 50, 1118, 1824, 2525, 2858
BstNI CCWGG 3 cut(s) 1406, 2036, 2334
BstNSI RCATGY 3 cut(s) 48, 70, 1546
BstSCI CCNGG 5 cut(s) 765, 1404, 2034, 2131, 2332
BstSFI CTRYAG 1 cut(s) 993
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 1 cut(s) 1521
BstV1I GCAGC 7 cut(s) 61, 308, 449, 1007, 1814, 2375, 2779
BstV2I GAAGAC 5 cut(s) 260, 614, 1311, 1668, 2843
BstXI CCANNNNNNTGG 1 cut(s) 1347
Bsu15I ATCGAT 1 cut(s) 854
Bsu36I CCTNAGG 1 cut(s) 1236
BsuRI GGCC 6 cut(s) 225, 770, 847, 1619, 2144, 2519
BsuTUI ATCGAT 1 cut(s) 854
BtgI CCRYGG 2 cut(s) 1562, 2514
BtsCI GGATG 8 cut(s) 203, 413, 554, 928, 1299, 1756, 2044, 2832
BtsI GCAGTG 3 cut(s) 393, 541, 1849
BtsIMutI CAGTG 8 cut(s) 138, 252, 393, 541, 1611, 1642, 1849, 2718
Cac8I GCNNGC 5 cut(s) 27, 72, 989, 993, 2656
CaiI CAGNNNCTG 1 cut(s) 636
CciI TCATGA 1 cut(s) 2539
CfoI GCGC 4 cut(s) 148, 1099, 2369, 2415
Cfr13I GGNCC 3 cut(s) 2032, 2142, 2918
ClaI ATCGAT 1 cut(s) 854
Csp6I GTAC 9 cut(s) 180, 870, 1471, 1670, 1790, 2121, 2408, 2466, 2508
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviQI GTAC 9 cut(s) 180, 870, 1471, 1670, 1790, 2121, 2408, 2466, 2508
DdeI CTNAG 9 cut(s) 380, 699, 1018, 1052, 1236, 1614, 1806, 1831, 2754
DraI TTTAAA 1 cut(s) 717
EaeI YGGCCR 2 cut(s) 845, 2517
Eam1104I CTCTTC 3 cut(s) 977, 1964, 2232
EarI CTCTTC 3 cut(s) 977, 1964, 2232
Eco130I CCWWGG 1 cut(s) 1562
Eco147I AGGCCT 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 2911
Eco32I GATATC 1 cut(s) 1150
Eco47I GGWCC 2 cut(s) 2032, 2918
Eco47III AGCGCT 1 cut(s) 2414
Eco57I CTGAAG 3 cut(s) 929, 1001, 2301
Eco81I CCTNAGG 1 cut(s) 1236
Eco88I CYCGRG 2 cut(s) 344, 485
EcoNI CCTNNNNNAGG 1 cut(s) 2085
EcoO109I RGGNCCY 1 cut(s) 2032
EcoRII CCWGG 3 cut(s) 1404, 2034, 2332
EcoRV GATATC 1 cut(s) 1150
EcoT14I CCWWGG 1 cut(s) 1562
EcoT22I ATGCAT 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 2911
ErhI CCWWGG 1 cut(s) 1562
FalI AAGNNNNNCTT 8 cut(s) 819, 851, 2418, 2450, 2446, 2478, 2730, 2762
FaqI GGGAC 3 cut(s) 450, 591, 2045
FauI CCCGC 3 cut(s) 34, 1379, 2102
FauNDI CATATG 1 cut(s) 285
FbaI TGATCA 2 cut(s) 2542, 2637
Fnu4HI GCNGC 7 cut(s) 75, 322, 463, 996, 1828, 2389, 2768
FokI GGATG 8 cut(s) 190, 400, 541, 935, 1286, 1763, 2051, 2839
FriOI GRGCYC 1 cut(s) 2911
Fsp4HI GCNGC 7 cut(s) 75, 322, 463, 996, 1828, 2389, 2768
FspAI RTGCGCAY 1 cut(s) 1098
FspBI CTAG 3 cut(s) 5, 1275, 2471
FspI TGCGCA 1 cut(s) 1098
GlaI GCGC 4 cut(s) 147, 1098, 2368, 2414
GluI GCNGC 7 cut(s) 75, 322, 463, 996, 1828, 2389, 2768
GsaI CCCAGC 2 cut(s) 1336, 1686
HaeII RGCGCY 1 cut(s) 2416
HaeIII GGCC 6 cut(s) 225, 770, 847, 1619, 2144, 2519
HapII CCGG 4 cut(s) 318, 626, 767, 2133
HhaI GCGC 4 cut(s) 148, 1099, 2369, 2415
Hin6I GCGC 4 cut(s) 146, 1097, 2367, 2413
HinP1I GCGC 4 cut(s) 146, 1097, 2367, 2413
HincII GTYRAC 2 cut(s) 2244, 2743
HindII GTYRAC 2 cut(s) 2244, 2743
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 8 cut(s) 265, 762, 1003, 1728, 1958, 2352, 2734, 2930
HpaI GTTAAC 1 cut(s) 2743
HpaII CCGG 4 cut(s) 318, 626, 767, 2133
HphI GGTGA 5 cut(s) 1808, 2320, 2550, 2559, 2715
Hpy166II GTNNAC 6 cut(s) 242, 731, 2123, 2244, 2468, 2743
Hpy8I GTNNAC 6 cut(s) 242, 731, 2123, 2244, 2468, 2743
HpyAV CCTTC 9 cut(s) 145, 665, 904, 1459, 1907, 2298, 2448, 2487, 2756
HpyCH4III ACNGT 7 cut(s) 632, 874, 1137, 1428, 1475, 1511, 1646
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 1118, 1824, 2525, 2858
HpyF3I CTNAG 9 cut(s) 380, 699, 1018, 1052, 1236, 1614, 1806, 1831, 2754
HspAI GCGC 4 cut(s) 146, 1097, 2367, 2413
Kpn2I TCCGGA 1 cut(s) 625
Ksp22I TGATCA 2 cut(s) 2542, 2637
KspAI GTTAAC 1 cut(s) 2743
LguI GCTCTTC 1 cut(s) 977
LmnI GCTCC 7 cut(s) 376, 517, 1815, 1882, 2336, 2374, 2420
Lsp1109I GCAGC 7 cut(s) 61, 308, 449, 1007, 1814, 2375, 2779
MaeI CTAG 3 cut(s) 5, 1275, 2471
MfeI CAATTG 4 cut(s) 420, 561, 1031, 2805
MhlI GDGCHC 3 cut(s) 511, 680, 2911
MlsI TGGCCA 2 cut(s) 847, 2519
MluNI TGGCCA 2 cut(s) 847, 2519
MlyI GAGTC 4 cut(s) 274, 756, 2361, 2728
MmeI TCCRAC 4 cut(s) 1970, 2198, 2362, 2958
Mox20I TGGCCA 2 cut(s) 847, 2519
Mph1103I ATGCAT 1 cut(s) 46
MroI TCCGGA 1 cut(s) 625
MroXI GAANNNNTTC 3 cut(s) 429, 570, 1026
MscI TGGCCA 2 cut(s) 847, 2519
MslI CAYNNNNRTG 3 cut(s) 284, 1547, 2825
Msp20I TGGCCA 2 cut(s) 847, 2519
MspA1I CMGCKG 2 cut(s) 1186, 1835
MspCI CTTAAG 2 cut(s) 119, 260
MspI CCGG 4 cut(s) 318, 626, 767, 2133
MspR9I CCNGG 5 cut(s) 767, 1406, 2036, 2133, 2334
MunI CAATTG 4 cut(s) 420, 561, 1031, 2805
MvaI CCWGG 3 cut(s) 1406, 2036, 2334
MvnI CGCG 1 cut(s) 1521
MwoI GCNNNNNNNGC 5 cut(s) 50, 1118, 1824, 2525, 2858
NciI CCSGG 2 cut(s) 767, 2133
NcoI CCATGG 1 cut(s) 1562
NdeI CATATG 1 cut(s) 285
NlaIV GGNNCC 4 cut(s) 1782, 1817, 2033, 2673
NmuCI GTSAC 5 cut(s) 62, 1697, 1850, 1862, 2881
NsbI TGCGCA 1 cut(s) 1098
NsiI ATGCAT 1 cut(s) 46
NspI RCATGY 3 cut(s) 48, 70, 1546
PagI TCATGA 1 cut(s) 2539
PasI CCCWGGG 1 cut(s) 1405
PceI AGGCCT 1 cut(s) 225
PciI ACATGT 1 cut(s) 1542
PciSI GCTCTTC 1 cut(s) 977
PdmI GAANNNNTTC 3 cut(s) 429, 570, 1026
PfeI GAWTC 4 cut(s) 1003, 1728, 1958, 2930
PflFI GACNNNGTC 1 cut(s) 2842
PkrI GCNGC 7 cut(s) 76, 323, 464, 997, 1829, 2390, 2769
PleI GAGTC 4 cut(s) 273, 756, 2360, 2728
PpsI GAGTC 4 cut(s) 273, 756, 2360, 2728
PpuMI RGGWCCY 1 cut(s) 2032
PscI ACATGT 1 cut(s) 1542
PshBI ATTAAT 2 cut(s) 39, 1581
PsiI TTATAA 1 cut(s) 2780
Psp5II RGGWCCY 1 cut(s) 2032
Psp6I CCWGG 3 cut(s) 1404, 2034, 2332
PspFI CCCAGC 2 cut(s) 1332, 1682
PspGI CCWGG 3 cut(s) 1404, 2034, 2332
PspN4I GGNNCC 4 cut(s) 1782, 1817, 2033, 2673
PspPI GGNCC 3 cut(s) 2032, 2142, 2918
PspPPI RGGWCCY 1 cut(s) 2032
PsrI GAACNNNNNNTAC 2 cut(s) 1773, 1805
PstI CTGCAG 1 cut(s) 997
PstNI CAGNNNCTG 1 cut(s) 636
PsyI GACNNNGTC 1 cut(s) 2842
PvuII CAGCTG 2 cut(s) 1186, 1835
RsaI GTAC 9 cut(s) 181, 871, 1472, 1671, 1791, 2122, 2409, 2467, 2509
RsaNI GTAC 9 cut(s) 180, 870, 1471, 1670, 1790, 2121, 2408, 2466, 2508
RseI CAYNNNNRTG 3 cut(s) 284, 1547, 2825
SapI GCTCTTC 1 cut(s) 977
SatI GCNGC 7 cut(s) 75, 322, 463, 996, 1828, 2389, 2768
Sau96I GGNCC 3 cut(s) 2032, 2142, 2918
SchI GAGTC 4 cut(s) 274, 756, 2361, 2728
ScrFI CCNGG 5 cut(s) 767, 1406, 2036, 2133, 2334
SduI GDGCHC 3 cut(s) 511, 680, 2911
SfcI CTRYAG 1 cut(s) 993
SinI GGWCC 2 cut(s) 2032, 2918
SmiMI CAYNNNNRTG 3 cut(s) 284, 1547, 2825
SmlI CTYRAG 8 cut(s) 119, 235, 260, 299, 332, 473, 1820, 2736
SmoI CTYRAG 8 cut(s) 119, 235, 260, 299, 332, 473, 1820, 2736
SseBI AGGCCT 1 cut(s) 225
SsiI CCGC 4 cut(s) 27, 1386, 1519, 2109
SspI AATATT 1 cut(s) 1498
SspMI CTAG 3 cut(s) 5, 1275, 2471
StuI AGGCCT 1 cut(s) 225
StyD4I CCNGG 5 cut(s) 765, 1404, 2034, 2131, 2332
StyI CCWWGG 1 cut(s) 1562
TaaI ACNGT 7 cut(s) 632, 874, 1137, 1428, 1475, 1511, 1646
TaqI TCGA 9 cut(s) 669, 854, 1156, 1435, 1689, 1710, 1726, 2128, 2531
TaqII GACCGA 1 cut(s) 1142
TatI WGTACW 5 cut(s) 179, 869, 2120, 2407, 2465
TfiI GAWTC 4 cut(s) 1003, 1728, 1958, 2930
TscAI CASTG 8 cut(s) 145, 259, 400, 541, 1618, 1649, 1849, 2718
TseFI GTSAC 5 cut(s) 62, 1697, 1850, 1862, 2881
TseI GCWGC 7 cut(s) 74, 321, 462, 995, 1827, 2388, 2767
Tsp45I GTSAC 5 cut(s) 62, 1697, 1850, 1862, 2881
TspGWI ACGGA 3 cut(s) 1312, 2111, 2503
TspRI CASTG 8 cut(s) 145, 259, 400, 541, 1618, 1649, 1849, 2718
Tth111I GACNNNGTC 1 cut(s) 2842
Vha464I CTTAAG 2 cut(s) 119, 260
VpaK11BI GGWCC 2 cut(s) 2032, 2918
VspI ATTAAT 2 cut(s) 39, 1581
XagI CCTNNNNNAGG 1 cut(s) 2085
XapI RAATTY 9 cut(s) 14, 293, 703, 712, 958, 1284, 1571, 1622, 2430
XceI RCATGY 3 cut(s) 48, 70, 1546
XcmI CCANNNNNNNNNTGG 2 cut(s) 1006, 1772
XmnI GAANNNNTTC 3 cut(s) 429, 570, 1026
XspI CTAG 3 cut(s) 5, 1275, 2471
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.