TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 55 - 209 | 1.9e-19 | NB-ARC domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 515 |
| AciI | CCGC | 2 cut(s) | 358, 498 |
| AclWI | GGATC | 2 cut(s) | 70, 384 |
| AcsI | RAATTY | 1 cut(s) | 139 |
| AcuI | CTGAAG | 2 cut(s) | 586, 601 |
| AfaI | GTAC | 1 cut(s) | 312 |
| AflII | CTTAAG | 1 cut(s) | 574 |
| AgsI | TTSAA | 4 cut(s) | 44, 257, 346, 596 |
| AjiI | CACGTC | 1 cut(s) | 82 |
| AjnI | CCWGG | 1 cut(s) | 154 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 456, 488 |
| AluBI | AGCT | 5 cut(s) | 37, 227, 260, 590, 714 |
| AluI | AGCT | 5 cut(s) | 37, 227, 260, 590, 714 |
| Alw26I | GTCTC | 2 cut(s) | 88, 657 |
| AlwI | GGATC | 2 cut(s) | 70, 384 |
| Ama87I | CYCGRG | 2 cut(s) | 222, 656 |
| ApeKI | GCWGC | 2 cut(s) | 264, 481 |
| ApoI | RAATTY | 1 cut(s) | 139 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 327 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| AvaI | CYCGRG | 2 cut(s) | 222, 656 |
| BbsI | GAAGAC | 1 cut(s) | 471 |
| BbvI | GCAGC | 2 cut(s) | 251, 493 |
| BciT130I | CCWGG | 1 cut(s) | 156 |
| BcoDI | GTCTC | 2 cut(s) | 88, 657 |
| BfaI | CTAG | 2 cut(s) | 336, 522 |
| BfrI | CTTAAG | 1 cut(s) | 574 |
| BglII | AGATCT | 1 cut(s) | 570 |
| BisI | GCNGC | 2 cut(s) | 265, 482 |
| BlsI | GCNGC | 2 cut(s) | 266, 483 |
| Bme1390I | CCNGG | 1 cut(s) | 156 |
| BmeT110I | CYCGRG | 2 cut(s) | 222, 656 |
| BmgBI | CACGTC | 1 cut(s) | 82 |
| BmiI | GGNNCC | 1 cut(s) | 385 |
| BmrFI | CCNGG | 1 cut(s) | 156 |
| BmsI | GCATC | 2 cut(s) | 345, 541 |
| BpiI | GAAGAC | 1 cut(s) | 471 |
| Bsa29I | ATCGAT | 1 cut(s) | 646 |
| BsaJI | CCNNGG | 2 cut(s) | 155, 216 |
| BseBI | CCWGG | 1 cut(s) | 156 |
| BseCI | ATCGAT | 1 cut(s) | 646 |
| BseDI | CCNNGG | 2 cut(s) | 155, 216 |
| BseGI | GGATG | 2 cut(s) | 31, 151 |
| BseMII | CTCAG | 1 cut(s) | 34 |
| BseXI | GCAGC | 2 cut(s) | 251, 493 |
| BsgI | GTGCAG | 1 cut(s) | 327 |
| Bsh1285I | CGRYCG | 1 cut(s) | 650 |
| BshVI | ATCGAT | 1 cut(s) | 646 |
| BsiEI | CGRYCG | 1 cut(s) | 650 |
| BsiHKCI | CYCGRG | 2 cut(s) | 222, 656 |
| BsmAI | GTCTC | 2 cut(s) | 88, 657 |
| BsmBI | CGTCTC | 2 cut(s) | 88, 657 |
| BsmI | GAATGC | 1 cut(s) | 484 |
| BsoBI | CYCGRG | 2 cut(s) | 222, 656 |
| Bsp143I | GATC | 4 cut(s) | 75, 376, 570, 647 |
| Bsp19I | CCATGG | 1 cut(s) | 216 |
| BspACI | CCGC | 2 cut(s) | 358, 498 |
| BspCNI | CTCAG | 1 cut(s) | 33 |
| BspDI | ATCGAT | 1 cut(s) | 646 |
| BspLI | GGNNCC | 1 cut(s) | 385 |
| BspPI | GGATC | 2 cut(s) | 70, 384 |
| BspTI | CTTAAG | 1 cut(s) | 574 |
| BssECI | CCNNGG | 2 cut(s) | 155, 216 |
| BssMI | GATC | 4 cut(s) | 75, 376, 570, 647 |
| BssT1I | CCWWGG | 1 cut(s) | 216 |
| Bst2UI | CCWGG | 1 cut(s) | 156 |
| Bst6I | CTCTTC | 1 cut(s) | 605 |
| BstAFI | CTTAAG | 1 cut(s) | 574 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 325 |
| BstC8I | GCNNGC | 2 cut(s) | 262, 664 |
| BstDEI | CTNAG | 2 cut(s) | 20, 539 |
| BstDSI | CCRYGG | 1 cut(s) | 216 |
| BstF5I | GGATG | 2 cut(s) | 31, 151 |
| BstKTI | GATC | 4 cut(s) | 78, 379, 573, 650 |
| BstMAI | GTCTC | 2 cut(s) | 88, 657 |
| BstMBI | GATC | 4 cut(s) | 75, 376, 570, 647 |
| BstMCI | CGRYCG | 1 cut(s) | 650 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 325 |
| BstNI | CCWGG | 1 cut(s) | 156 |
| BstNSI | RCATGY | 1 cut(s) | 678 |
| BstSCI | CCNGG | 1 cut(s) | 154 |
| BstV1I | GCAGC | 2 cut(s) | 251, 493 |
| BstV2I | GAAGAC | 1 cut(s) | 471 |
| BstX2I | RGATCY | 1 cut(s) | 570 |
| BstYI | RGATCY | 1 cut(s) | 570 |
| Bsu15I | ATCGAT | 1 cut(s) | 646 |
| BsuTUI | ATCGAT | 1 cut(s) | 646 |
| BtgI | CCRYGG | 1 cut(s) | 216 |
| BtrI | CACGTC | 1 cut(s) | 82 |
| BtsCI | GGATG | 2 cut(s) | 31, 151 |
| Cac8I | GCNNGC | 2 cut(s) | 262, 664 |
| ClaI | ATCGAT | 1 cut(s) | 646 |
| Csp6I | GTAC | 1 cut(s) | 311 |
| CviAII | CATG | 3 cut(s) | 217, 675, 681 |
| CviQI | GTAC | 1 cut(s) | 311 |
| DdeI | CTNAG | 2 cut(s) | 20, 539 |
| DpnI | GATC | 4 cut(s) | 77, 378, 572, 649 |
| DpnII | GATC | 4 cut(s) | 75, 376, 570, 647 |
| Eam1104I | CTCTTC | 1 cut(s) | 605 |
| EarI | CTCTTC | 1 cut(s) | 605 |
| EciI | GGCGGA | 1 cut(s) | 513 |
| Eco130I | CCWWGG | 1 cut(s) | 216 |
| Eco32I | GATATC | 1 cut(s) | 61 |
| Eco57I | CTGAAG | 2 cut(s) | 586, 601 |
| Eco88I | CYCGRG | 2 cut(s) | 222, 656 |
| EcoRII | CCWGG | 1 cut(s) | 154 |
| EcoRV | GATATC | 1 cut(s) | 61 |
| EcoT14I | CCWWGG | 1 cut(s) | 216 |
| ErhI | CCWWGG | 1 cut(s) | 216 |
| Esp3I | CGTCTC | 2 cut(s) | 88, 657 |
| FaeI | CATG | 3 cut(s) | 220, 678, 684 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 275, 307, 315, 347, 456, 488 |
| FatI | CATG | 3 cut(s) | 216, 674, 680 |
| FauNDI | CATATG | 1 cut(s) | 315 |
| Fnu4HI | GCNGC | 2 cut(s) | 265, 482 |
| FokI | GGATG | 2 cut(s) | 38, 138 |
| Fsp4HI | GCNGC | 2 cut(s) | 265, 482 |
| FspBI | CTAG | 2 cut(s) | 336, 522 |
| GluI | GCNGC | 2 cut(s) | 265, 482 |
| Hin1II | CATG | 3 cut(s) | 220, 678, 684 |
| HincII | GTYRAC | 1 cut(s) | 445 |
| HindII | GTYRAC | 1 cut(s) | 445 |
| HindIII | AAGCTT | 2 cut(s) | 35, 258 |
| HinfI | GANTC | 2 cut(s) | 339, 507 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy166II | GTNNAC | 1 cut(s) | 445 |
| Hpy188I | TCNGA | 1 cut(s) | 620 |
| Hpy188III | TCNNGA | 7 cut(s) | 272, 295, 336, 343, 434, 593, 656 |
| Hpy8I | GTNNAC | 1 cut(s) | 445 |
| HpyAV | CCTTC | 4 cut(s) | 281, 340, 405, 625 |
| HpyCH4IV | ACGT | 2 cut(s) | 81, 371 |
| HpyCH4V | TGCA | 3 cut(s) | 308, 319, 532 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 325 |
| HpyF3I | CTNAG | 2 cut(s) | 20, 539 |
| HpySE526I | ACGT | 2 cut(s) | 81, 371 |
| Hsp92II | CATG | 3 cut(s) | 220, 678, 684 |
| Kzo9I | GATC | 4 cut(s) | 75, 376, 570, 647 |
| LmnI | GCTCC | 1 cut(s) | 711 |
| LpnPI | CCDG | 6 cut(s) | 7, 141, 168, 305, 589, 597 |
| Lsp1109I | GCAGC | 2 cut(s) | 251, 493 |
| LweI | GCATC | 2 cut(s) | 345, 541 |
| MaeI | CTAG | 2 cut(s) | 336, 522 |
| MaeII | ACGT | 2 cut(s) | 81, 371 |
| MalI | GATC | 4 cut(s) | 77, 378, 572, 649 |
| MboI | GATC | 4 cut(s) | 75, 376, 570, 647 |
| MboII | GAAGA | 3 cut(s) | 56, 476, 592 |
| MflI | RGATCY | 1 cut(s) | 570 |
| MluCI | AATT | 6 cut(s) | 6, 71, 139, 251, 449, 533 |
| MmeI | TCCRAC | 3 cut(s) | 91, 160, 354 |
| MnlI | CCTC | 3 cut(s) | 191, 374, 652 |
| MroXI | GAANNNNTTC | 1 cut(s) | 327 |
| MseI | TTAA | 2 cut(s) | 66, 575 |
| MslI | CAYNNNNRTG | 2 cut(s) | 129, 679 |
| MspCI | CTTAAG | 1 cut(s) | 574 |
| MspR9I | CCNGG | 1 cut(s) | 156 |
| Mva1269I | GAATGC | 1 cut(s) | 484 |
| MvaI | CCWGG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 325 |
| NcoI | CCATGG | 1 cut(s) | 216 |
| NdeI | CATATG | 1 cut(s) | 315 |
| NdeII | GATC | 4 cut(s) | 75, 376, 570, 647 |
| NlaIII | CATG | 3 cut(s) | 220, 678, 684 |
| NlaIV | GGNNCC | 1 cut(s) | 385 |
| NspI | RCATGY | 1 cut(s) | 678 |
| PaeR7I | CTCGAG | 2 cut(s) | 222, 656 |
| PctI | GAATGC | 1 cut(s) | 484 |
| PdmI | GAANNNNTTC | 1 cut(s) | 327 |
| PfeI | GAWTC | 2 cut(s) | 339, 507 |
| PkrI | GCNGC | 2 cut(s) | 266, 483 |
| Ple19I | CGATCG | 1 cut(s) | 650 |
| PsiI | TTATAA | 1 cut(s) | 515 |
| Psp6I | CCWGG | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 154 |
| PspN4I | GGNNCC | 1 cut(s) | 385 |
| PspXI | VCTCGAGB | 1 cut(s) | 222 |
| PsuI | RGATCY | 1 cut(s) | 570 |
| PvuI | CGATCG | 1 cut(s) | 650 |
| RsaI | GTAC | 1 cut(s) | 312 |
| RsaNI | GTAC | 1 cut(s) | 311 |
| RseI | CAYNNNNRTG | 2 cut(s) | 129, 679 |
| SaqAI | TTAA | 2 cut(s) | 66, 575 |
| SatI | GCNGC | 2 cut(s) | 265, 482 |
| Sau3AI | GATC | 4 cut(s) | 75, 376, 570, 647 |
| ScrFI | CCNGG | 1 cut(s) | 156 |
| SfaNI | GCATC | 2 cut(s) | 345, 541 |
| Sfr274I | CTCGAG | 2 cut(s) | 222, 656 |
| SlaI | CTCGAG | 2 cut(s) | 222, 656 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 129, 679 |
| SmlI | CTYRAG | 3 cut(s) | 222, 574, 656 |
| SmoI | CTYRAG | 3 cut(s) | 222, 574, 656 |
| Sse9I | AATT | 6 cut(s) | 6, 71, 139, 251, 449, 533 |
| SsiI | CCGC | 2 cut(s) | 358, 498 |
| SspMI | CTAG | 2 cut(s) | 336, 522 |
| StyD4I | CCNGG | 1 cut(s) | 154 |
| StyI | CCWWGG | 1 cut(s) | 216 |
| TaiI | ACGT | 2 cut(s) | 84, 374 |
| TaqI | TCGA | 7 cut(s) | 223, 273, 296, 379, 462, 646, 657 |
| TasI | AATT | 6 cut(s) | 6, 71, 139, 251, 449, 533 |
| TatI | WGTACW | 1 cut(s) | 310 |
| TfiI | GAWTC | 2 cut(s) | 339, 507 |
| Tru1I | TTAA | 2 cut(s) | 66, 575 |
| Tru9I | TTAA | 2 cut(s) | 66, 575 |
| TseI | GCWGC | 2 cut(s) | 264, 481 |
| TspDTI | ATGAA | 5 cut(s) | 147, 152, 252, 415, 477 |
| Vha464I | CTTAAG | 1 cut(s) | 574 |
| XapI | RAATTY | 1 cut(s) | 139 |
| XbaI | TCTAGA | 1 cut(s) | 335 |
| XceI | RCATGY | 1 cut(s) | 678 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 394 |
| XhoI | CTCGAG | 2 cut(s) | 222, 656 |
| XmnI | GAANNNNTTC | 1 cut(s) | 327 |
| XspI | CTAG | 2 cut(s) | 336, 522 |