Rh1CG380800

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000067
Physical Location & Seq
Forward (+)
65062589 .. 65064402
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG380800.1

Sequence Viewer

Length: 1734 bp
ATGAAGGAGCTATCAATGCTTTGTTTAGATGGGACCGCAATTAAAGGACTGCCCTCATCAATTGATCTGCTTCTGAGGATTAAAAAATTAAGTGTGCAGAACTGCAAAAGCCTTGAATTTCTTCCAGACAGTATCTGTAATTTGGCAAACCTTACACATATGAATCTGTCTGGGTGCTCAGTACTTCATTACTTGCCTGAGAAATTGGGGGACTTGGAATCCTTAGAGGTCCTCGATGTAGGATATAGTGGTATAAAACAACTTCCATTCTCTGTCCTACGTTTGGGAAAGCTTAAAGGTGGATTATCATGTATTGGATGTAAAAAGATGACGGCACCCTTGTCAGCCTGGCCATCATCAATCGAAGAATATTATAGTTACTCTGTTCTGCTACGTCTTGATTTAAGTGACTGCAATCTGTTGGAGTTATCGGATGGTATTGCTCATTTATATTCATTGAAAACATTAAAGCTGTGCAGAAACAATTTGGAGAGCTTACCTGTGACAATGAATCGACTTCGTTGTCTAACGCATCTTGAATTGGAAGCTTGTAAGCGACTGAAGTCGGTACCTGAGCTTTCATCGAGTGTAATACGCATAGATGCACATGATTGCACAGCTCTGGAAACAGTTTCAAGACGAAAGACTGATCCAGTATGTAGAATTCTAGACTTCAGGTTTTCTAATTGCTTCCGGCTTCAAGCAAATTTGTTTATAGATATTGTTGAGACTGAGACTTATTCTCTCGACCAGGACAGTCATCTGCGACCTCTGTGGTTCCACATGTGGCTTCCTGGAAGTGAAGTTCCAGAATGGTTCAACCTTCGGGATACAGGATGTTCAGAAACTTTTCGGAAGACAGGATGTTCAGCAACTTTCCAAGCACCACTGAATAGTTTCAATAACAAGCTTTTAGGATTTGCTATATGCATTGTTATTAAATTCAATGGTGCTCGTCATGATGTATCTGATATGTATGGAAGATGTTATTGGACCTCAAAAGGAAAGCATGGTGAGTACTCCTTCGAATTTGATTTGATCGGCCGGCAGTTCGGAATTTACAGTATAGAGTCAGATCACCTGTTCATGGCATATTTTCCATGGTCTGGATATGGCTGGAATTCACAAGATAGATTAGATGCATTTAAGATTGTAGTAGAAACTGGAACTTATTCTCCGACAGAAGATTGGTTCACTAGTGGCTGCGGTGTTCGTTTAGTTTATGCTCACGATGAAATGCAAAATAGCGTGACACAGCCCATAATTCATGTGGATGGCCAGACAATGGAGGATGCGGTGCAGCAGGGGGAGGGTTGCTGTGCGATAGGAGGGGTGTCGGGGCTTGGCGCACCTTTCTTTACGGACCCGTTGGAAATAAGAAAGAGTGAAACAGAGTTGGAGGCAGAGTCATCGGAGTCGCGTGAGGAGAGAGGCACGTGCCAAATATTGGAGCTGTTACCAGAGCTGCAGACCGAGAGAAAAGAAGAGGAGGAGGGAGAGGGGTGCCAGGCGTTAGGGTCGGCATTCTCTCTGAGAAAGAAAGAAACAGAAAGAGAAGGAGACAGAGTCACCAGAATCTCGGACGAGGGGGAGATATCGGAGTTGGGCAGCCACAGTGATCTGGTGGTGCCAAATTCACAGAGTGAGGGCAAAGAAGAGAAAGAATTGATGGGGGAGGAGTCGTTGGAGAGGGTTGTTAGGGCCGCTGTGCAGCTGCTTTTACTGGCTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

577

Amino Acids

64.66

Weight (kDa)

5.03

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 44 - 99 2.2e-08 Leucine-rich repeat region
LRR_14 PF23598 131 - 188 8.5e-06 Leucine-rich repeat region
LRR_8 PF13855 132 - 184 7.6e-07 Leucine rich repeat
C-JID PF20160 264 - 411 2.5e-10 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 522
Acc65I GGTACC 1 cut(s) 568
AccB1I GGYRCC 4 cut(s) 334, 568, 1503, 1627
AccB7I CCANNNNNTGG 3 cut(s) 1106, 1285, 1447
AccII CGCG 1 cut(s) 1420
AciI CCGC 4 cut(s) 36, 1206, 1295, 1704
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 3 cut(s) 350, 1042, 1276
AcsI RAATTY 8 cut(s) 116, 663, 706, 941, 1028, 1056, 1120, 1633
AcuI CTGAAG 2 cut(s) 581, 658
AcvI CACGTG 1 cut(s) 1437
AdeI CACNNNGTG 1 cut(s) 1643
AfaI GTAC 3 cut(s) 183, 570, 1019
AfiI CCNNNNNNNGG 5 cut(s) 283, 1087, 1106, 1285, 1447
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 8 cut(s) 116, 460, 539, 636, 701, 820, 901, 946
AhlI ACTAGT 1 cut(s) 1196
AjnI CCWGG 4 cut(s) 347, 750, 793, 1506
AjuI GAANNNNNNNTTGG 2 cut(s) 973, 1005
AloI GAACNNNNNNTCC 4 cut(s) 789, 821, 1159, 1191
Alw21I GWGCWC 2 cut(s) 179, 955
Alw26I GTCTC 3 cut(s) 722, 728, 1554
AlwI GGATC 1 cut(s) 644
AlwNI CAGNNNCTG 1 cut(s) 135
AoxI GGCC 4 cut(s) 350, 1042, 1276, 1701
ApeKI GCWGC 6 cut(s) 1203, 1300, 1465, 1608, 1711, 1714
ApoI RAATTY 8 cut(s) 116, 663, 706, 941, 1028, 1056, 1120, 1633
Asp700I GAANNNNTTC 4 cut(s) 120, 849, 896, 1171
Asp718I GGTACC 1 cut(s) 568
AspLEI GCGC 1 cut(s) 1349
AspS9I GGNCC 5 cut(s) 33, 229, 993, 1363, 1701
AsuHPI GGTGA 3 cut(s) 1025, 1070, 1561
AsuII TTCGAA 1 cut(s) 1026
AvaII GGWCC 4 cut(s) 33, 229, 993, 1363
BalI TGGCCA 2 cut(s) 352, 1278
BanI GGYRCC 4 cut(s) 334, 568, 1503, 1627
BbrPI CACGTG 1 cut(s) 1437
BbsI GAAGAC 1 cut(s) 863
Bbv12I GWGCWC 2 cut(s) 179, 955
BbvI GCAGC 6 cut(s) 1190, 1312, 1452, 1620, 1701, 1723
BccI CCATC 5 cut(s) 23, 361, 428, 1268, 1663
BceAI ACGGC 1 cut(s) 348
BcgI CGANNNNNNTGC 2 cut(s) 1392, 1426
BciT130I CCWGG 4 cut(s) 349, 752, 795, 1508
BciVI GTATCC 1 cut(s) 823
BcoDI GTCTC 3 cut(s) 722, 728, 1554
BcuI ACTAGT 1 cut(s) 1196
BfaI CTAG 2 cut(s) 668, 1197
BfmI CTRYAG 1 cut(s) 1466
BfuI GTATCC 1 cut(s) 823
BisI GCNGC 7 cut(s) 1204, 1301, 1466, 1609, 1704, 1712, 1715
BlsI GCNGC 7 cut(s) 1205, 1302, 1467, 1610, 1705, 1713, 1716
BmcAI AGTACT 2 cut(s) 183, 1019
Bme1390I CCNGG 4 cut(s) 349, 752, 795, 1508
Bme18I GGWCC 4 cut(s) 33, 229, 993, 1363
BmgT120I GGNCC 5 cut(s) 33, 229, 993, 1363, 1701
BmiI GGNNCC 7 cut(s) 34, 336, 570, 779, 1365, 1505, 1629
BmrFI CCNGG 4 cut(s) 349, 752, 795, 1508
BmsI GCATC 4 cut(s) 541, 592, 1129, 1282
BoxI GACNNNNGTC 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 863
Bpu10I CCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 1026
BsaAI YACGTR 1 cut(s) 1437
BsaJI CCNNGG 1 cut(s) 1100
BsaXI ACNNNNNCTCC 8 cut(s) 1159, 1189, 1391, 1421, 1551, 1581, 1667, 1697
Bsc4I CCNNNNNNNGG 5 cut(s) 283, 1087, 1106, 1285, 1447
Bse118I RCCGGY 1 cut(s) 1044
Bse1I ACTGG 3 cut(s) 653, 1168, 1728
BseBI CCWGG 4 cut(s) 349, 752, 795, 1508
BseDI CCNNGG 1 cut(s) 1100
BseGI GGATG 6 cut(s) 323, 439, 842, 869, 1279, 1297
BseLI CCNNNNNNNGG 5 cut(s) 283, 1087, 1106, 1285, 1447
BseMII CTCAG 6 cut(s) 65, 189, 192, 564, 723, 1523
BseNI ACTGG 3 cut(s) 653, 1168, 1728
BseRI GAGGAG 4 cut(s) 1439, 1502, 1505, 1691
BseX3I CGGCCG 1 cut(s) 1042
BseXI GCAGC 6 cut(s) 1190, 1312, 1452, 1620, 1701, 1723
BseYI CCCAGC 1 cut(s) 1727
BsgI GTGCAG 4 cut(s) 116, 496, 1319, 1730
Bsh1236I CGCG 1 cut(s) 1420
Bsh1285I CGRYCG 1 cut(s) 1045
BshFI GGCC 4 cut(s) 352, 1044, 1278, 1703
BshNI GGYRCC 4 cut(s) 334, 568, 1503, 1627
BsiEI CGRYCG 1 cut(s) 1045
BsiHKAI GWGCWC 2 cut(s) 179, 955
BsiSI CCGG 2 cut(s) 694, 1045
BslFI GGGAC 2 cut(s) 46, 224
BslI CCNNNNNNNGG 5 cut(s) 283, 1087, 1106, 1285, 1447
BsmAI GTCTC 3 cut(s) 722, 728, 1554
BsmFI GGGAC 2 cut(s) 46, 224
BsmI GAATGC 1 cut(s) 1523
BsnI GGCC 4 cut(s) 352, 1044, 1278, 1703
Bsp119I TTCGAA 1 cut(s) 1026
Bsp1286I GDGCHC 2 cut(s) 179, 955
Bsp143I GATC 5 cut(s) 64, 649, 1038, 1075, 1618
Bsp19I CCATGG 1 cut(s) 1100
BspACI CCGC 4 cut(s) 36, 1206, 1295, 1704
BspANI GGCC 4 cut(s) 352, 1044, 1278, 1703
BspCNI CTCAG 6 cut(s) 66, 190, 191, 565, 724, 1524
BspFNI CGCG 1 cut(s) 1420
BspHI TCATGA 1 cut(s) 958
BspLI GGNNCC 7 cut(s) 34, 336, 570, 779, 1365, 1505, 1629
BspMAI CTGCAG 1 cut(s) 1470
BspPI GGATC 1 cut(s) 644
BspT104I TTCGAA 1 cut(s) 1026
BspT107I GGYRCC 4 cut(s) 334, 568, 1503, 1627
BsrFI RCCGGY 1 cut(s) 1044
BsrI ACTGG 3 cut(s) 653, 1168, 1728
BssAI RCCGGY 1 cut(s) 1044
BssECI CCNNGG 1 cut(s) 1100
BssMI GATC 5 cut(s) 64, 649, 1038, 1075, 1618
BssT1I CCWWGG 1 cut(s) 1100
Bst2UI CCWGG 4 cut(s) 349, 752, 795, 1508
Bst4CI ACNGT 5 cut(s) 131, 631, 758, 1064, 1616
Bst6I CTCTTC 2 cut(s) 1479, 1650
BstBAI YACGTR 1 cut(s) 1437
BstBI TTCGAA 1 cut(s) 1026
BstC8I GCNNGC 1 cut(s) 1046
BstDEI CTNAG 7 cut(s) 74, 178, 198, 223, 573, 732, 1532
BstDSI CCRYGG 1 cut(s) 1100
BstF5I GGATG 6 cut(s) 323, 439, 842, 869, 1279, 1297
BstFNI CGCG 1 cut(s) 1420
BstHHI GCGC 1 cut(s) 1349
BstKTI GATC 5 cut(s) 67, 652, 1041, 1078, 1621
BstMAI GTCTC 3 cut(s) 722, 728, 1554
BstMBI GATC 5 cut(s) 64, 649, 1038, 1075, 1618
BstMCI CGRYCG 1 cut(s) 1045
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 4 cut(s) 349, 752, 795, 1508
BstNSI RCATGY 1 cut(s) 787
BstPAI GACNNNNGTC 1 cut(s) 562
BstSCI CCNGG 4 cut(s) 347, 750, 793, 1506
BstSFI CTRYAG 1 cut(s) 1466
BstUI CGCG 1 cut(s) 1420
BstV1I GCAGC 6 cut(s) 1190, 1312, 1452, 1620, 1701, 1723
BstV2I GAAGAC 1 cut(s) 863
BstZI CGGCCG 1 cut(s) 1042
BsuI GTATCC 1 cut(s) 823
BsuRI GGCC 4 cut(s) 352, 1044, 1278, 1703
BtgI CCRYGG 1 cut(s) 1100
BtsCI GGATG 6 cut(s) 323, 439, 842, 869, 1279, 1297
BtsIMutI CAGTG 2 cut(s) 887, 1621
Cac8I GCNNGC 1 cut(s) 1046
CaiI CAGNNNCTG 1 cut(s) 135
CciI TCATGA 1 cut(s) 958
CfoI GCGC 1 cut(s) 1349
Cfr10I RCCGGY 1 cut(s) 1044
Cfr13I GGNCC 5 cut(s) 33, 229, 993, 1363, 1701
Csp6I GTAC 3 cut(s) 182, 569, 1018
CviAII CATG 8 cut(s) 309, 608, 784, 959, 1010, 1087, 1101, 1268
CviQI GTAC 3 cut(s) 182, 569, 1018
DdeI CTNAG 7 cut(s) 74, 178, 198, 223, 573, 732, 1532
DpnI GATC 5 cut(s) 66, 651, 1040, 1077, 1620
DpnII GATC 5 cut(s) 64, 649, 1038, 1075, 1618
DraIII CACNNNGTG 1 cut(s) 1643
DrdI GACNNNNNNGTC 1 cut(s) 522
DseDI GACNNNNNNGTC 1 cut(s) 522
EaeI YGGCCR 3 cut(s) 350, 1042, 1276
EagI CGGCCG 1 cut(s) 1042
Eam1104I CTCTTC 2 cut(s) 1479, 1650
EarI CTCTTC 2 cut(s) 1479, 1650
EclXI CGGCCG 1 cut(s) 1042
Eco130I CCWWGG 1 cut(s) 1100
Eco32I GATATC 1 cut(s) 1596
Eco47I GGWCC 4 cut(s) 33, 229, 993, 1363
Eco52I CGGCCG 1 cut(s) 1042
Eco57I CTGAAG 2 cut(s) 581, 658
Eco72I CACGTG 1 cut(s) 1437
EcoO109I RGGNCCY 1 cut(s) 229
EcoRI GAATTC 2 cut(s) 663, 1120
EcoRII CCWGG 4 cut(s) 347, 750, 793, 1506
EcoRV GATATC 1 cut(s) 1596
EcoT14I CCWWGG 1 cut(s) 1100
EcoT22I ATGCAT 2 cut(s) 932, 1144
ErhI CCWWGG 1 cut(s) 1100
FaeI CATG 8 cut(s) 312, 611, 787, 962, 1013, 1090, 1104, 1271
FaqI GGGAC 2 cut(s) 46, 224
FatI CATG 8 cut(s) 308, 607, 783, 958, 1009, 1086, 1100, 1267
FauNDI CATATG 1 cut(s) 159
Fnu4HI GCNGC 7 cut(s) 1204, 1301, 1466, 1609, 1704, 1712, 1715
FokI GGATG 6 cut(s) 330, 446, 849, 876, 1286, 1304
Fsp4HI GCNGC 7 cut(s) 1204, 1301, 1466, 1609, 1704, 1712, 1715
FspBI CTAG 2 cut(s) 668, 1197
GlaI GCGC 1 cut(s) 1348
GluI GCNGC 7 cut(s) 1204, 1301, 1466, 1609, 1704, 1712, 1715
GsaI CCCAGC 1 cut(s) 1731
HaeIII GGCC 4 cut(s) 352, 1044, 1278, 1703
HapII CCGG 2 cut(s) 694, 1045
HhaI GCGC 1 cut(s) 1349
Hin1II CATG 8 cut(s) 312, 611, 787, 962, 1013, 1090, 1104, 1271
Hin6I GCGC 1 cut(s) 1347
HinP1I GCGC 1 cut(s) 1347
HindIII AAGCTT 3 cut(s) 290, 546, 908
HinfI GANTC 9 cut(s) 163, 218, 511, 1070, 1406, 1415, 1566, 1575, 1679
HpaII CCGG 2 cut(s) 694, 1045
HphI GGTGA 3 cut(s) 1025, 1070, 1561
Hpy166II GTNNAC 1 cut(s) 1194
Hpy8I GTNNAC 1 cut(s) 1194
HpyAV CCTTC 3 cut(s) 833, 1033, 1550
HpyCH4III ACNGT 5 cut(s) 131, 631, 758, 1064, 1616
HpyCH4IV ACGT 3 cut(s) 280, 394, 1436
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 7 cut(s) 74, 178, 198, 223, 573, 732, 1532
HpySE526I ACGT 3 cut(s) 280, 394, 1436
Hsp92II CATG 8 cut(s) 312, 611, 787, 962, 1013, 1090, 1104, 1271
HspAI GCGC 1 cut(s) 1347
KpnI GGTACC 1 cut(s) 572
KroI GCCGGC 1 cut(s) 1044
KroNI GCCGGC 1 cut(s) 1046
Kzo9I GATC 5 cut(s) 64, 649, 1038, 1075, 1618
LmnI GCTCC 2 cut(s) 7, 1450
Lsp1109I GCAGC 6 cut(s) 1190, 1312, 1452, 1620, 1701, 1723
LweI GCATC 4 cut(s) 541, 592, 1129, 1282
MaeI CTAG 2 cut(s) 668, 1197
MaeII ACGT 3 cut(s) 280, 394, 1436
MaeIII GTNAC 6 cut(s) 377, 407, 502, 1249, 1455, 1567
MalI GATC 5 cut(s) 66, 651, 1040, 1077, 1620
MboI GATC 5 cut(s) 64, 649, 1038, 1075, 1618
MboII GAAGA 7 cut(s) 113, 377, 868, 993, 1196, 1496, 1667
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 2 cut(s) 179, 955
MlsI TGGCCA 2 cut(s) 352, 1278
MluNI TGGCCA 2 cut(s) 352, 1278
MlyI GAGTC 5 cut(s) 1079, 1415, 1424, 1575, 1688
MmeI TCCRAC 5 cut(s) 402, 1202, 1350, 1377, 1665
Mox20I TGGCCA 2 cut(s) 352, 1278
Mph1103I ATGCAT 2 cut(s) 932, 1144
MroNI GCCGGC 1 cut(s) 1044
MroXI GAANNNNTTC 4 cut(s) 120, 849, 896, 1171
MscI TGGCCA 2 cut(s) 352, 1278
MseI TTAA 8 cut(s) 42, 81, 89, 294, 404, 467, 939, 1146
MslI CAYNNNNRTG 1 cut(s) 1272
Msp20I TGGCCA 2 cut(s) 352, 1278
MspA1I CMGCKG 2 cut(s) 1706, 1714
MspI CCGG 2 cut(s) 694, 1045
MspR9I CCNGG 4 cut(s) 349, 752, 795, 1508
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 1523
MvaI CCWGG 4 cut(s) 349, 752, 795, 1508
MvnI CGCG 1 cut(s) 1420
MwoI GCNNNNNNNGC 1 cut(s) 16
NaeI GCCGGC 1 cut(s) 1046
NcoI CCATGG 1 cut(s) 1100
NdeI CATATG 1 cut(s) 159
NdeII GATC 5 cut(s) 64, 649, 1038, 1075, 1618
NgoMIV GCCGGC 1 cut(s) 1044
NlaIII CATG 8 cut(s) 312, 611, 787, 962, 1013, 1090, 1104, 1271
NlaIV GGNNCC 7 cut(s) 34, 336, 570, 779, 1365, 1505, 1629
NmuCI GTSAC 4 cut(s) 407, 502, 1249, 1567
NsiI ATGCAT 2 cut(s) 932, 1144
NspI RCATGY 1 cut(s) 787
NspV TTCGAA 1 cut(s) 1026
PagI TCATGA 1 cut(s) 958
PciI ACATGT 1 cut(s) 783
PctI GAATGC 1 cut(s) 1523
PdiI GCCGGC 1 cut(s) 1046
PdmI GAANNNNTTC 4 cut(s) 120, 849, 896, 1171
PfeI GAWTC 4 cut(s) 163, 218, 511, 1575
PflFI GACNNNGTC 1 cut(s) 1565
PflMI CCANNNNNTGG 3 cut(s) 1106, 1285, 1447
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 7 cut(s) 1205, 1302, 1467, 1610, 1705, 1713, 1716
PleI GAGTC 5 cut(s) 1078, 1414, 1423, 1574, 1687
PmaCI CACGTG 1 cut(s) 1437
PmlI CACGTG 1 cut(s) 1437
PpsI GAGTC 5 cut(s) 1078, 1414, 1423, 1574, 1687
Ppu21I YACGTR 1 cut(s) 1437
PpuMI RGGWCCY 1 cut(s) 229
PscI ACATGT 1 cut(s) 783
PshAI GACNNNNGTC 1 cut(s) 562
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 4 cut(s) 347, 750, 793, 1506
PspCI CACGTG 1 cut(s) 1437
PspFI CCCAGC 1 cut(s) 1727
PspGI CCWGG 4 cut(s) 347, 750, 793, 1506
PspN4I GGNNCC 7 cut(s) 34, 336, 570, 779, 1365, 1505, 1629
PspPI GGNCC 5 cut(s) 33, 229, 993, 1363, 1701
PspPPI RGGWCCY 1 cut(s) 229
PstI CTGCAG 1 cut(s) 1470
PstNI CAGNNNCTG 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 1565
PvuII CAGCTG 1 cut(s) 1714
RsaI GTAC 3 cut(s) 183, 570, 1019
RsaNI GTAC 3 cut(s) 182, 569, 1018
RseI CAYNNNNRTG 1 cut(s) 1272
SaqAI TTAA 8 cut(s) 42, 81, 89, 294, 404, 467, 939, 1146
SatI GCNGC 7 cut(s) 1204, 1301, 1466, 1609, 1704, 1712, 1715
Sau3AI GATC 5 cut(s) 64, 649, 1038, 1075, 1618
Sau96I GGNCC 5 cut(s) 33, 229, 993, 1363, 1701
ScaI AGTACT 2 cut(s) 183, 1019
SchI GAGTC 5 cut(s) 1079, 1415, 1424, 1575, 1688
ScrFI CCNGG 4 cut(s) 349, 752, 795, 1508
SduI GDGCHC 2 cut(s) 179, 955
SfaNI GCATC 4 cut(s) 541, 592, 1129, 1282
SfcI CTRYAG 1 cut(s) 1466
SfuI TTCGAA 1 cut(s) 1026
SinI GGWCC 4 cut(s) 33, 229, 993, 1363
SmiMI CAYNNNNRTG 1 cut(s) 1272
SpeI ACTAGT 1 cut(s) 1196
SsiI CCGC 4 cut(s) 36, 1206, 1295, 1704
SspI AATATT 2 cut(s) 371, 1446
SspMI CTAG 2 cut(s) 668, 1197
StyD4I CCNGG 4 cut(s) 347, 750, 793, 1506
StyI CCWWGG 1 cut(s) 1100
TaaI ACNGT 5 cut(s) 131, 631, 758, 1064, 1616
TaiI ACGT 3 cut(s) 283, 397, 1439
TaqI TCGA 6 cut(s) 234, 363, 514, 584, 747, 1026
TaqII GACCGA 1 cut(s) 1487
TatI WGTACW 2 cut(s) 181, 1017
TauI GCSGC 1 cut(s) 1706
TfiI GAWTC 4 cut(s) 163, 218, 511, 1575
Tru1I TTAA 8 cut(s) 42, 81, 89, 294, 404, 467, 939, 1146
Tru9I TTAA 8 cut(s) 42, 81, 89, 294, 404, 467, 939, 1146
TscAI CASTG 2 cut(s) 894, 1621
TseFI GTSAC 4 cut(s) 407, 502, 1249, 1567
TseI GCWGC 6 cut(s) 1203, 1300, 1465, 1608, 1711, 1714
Tsp45I GTSAC 4 cut(s) 407, 502, 1249, 1567
TspDTI ATGAA 9 cut(s) 17, 176, 176, 444, 524, 570, 1075, 1248, 1256
TspGWI ACGGA 1 cut(s) 1376
TspRI CASTG 2 cut(s) 894, 1621
Tth111I GACNNNGTC 1 cut(s) 1565
Van91I CCANNNNNTGG 3 cut(s) 1106, 1285, 1447
VpaK11BI GGWCC 4 cut(s) 33, 229, 993, 1363
XapI RAATTY 8 cut(s) 116, 663, 706, 941, 1028, 1056, 1120, 1633
XbaI TCTAGA 1 cut(s) 667
XceI RCATGY 1 cut(s) 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 1267
XmnI GAANNNNTTC 4 cut(s) 120, 849, 896, 1171
XspI CTAG 2 cut(s) 668, 1197
ZrmI AGTACT 2 cut(s) 183, 1019
Zsp2I ATGCAT 2 cut(s) 932, 1144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.