TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 18 - 159 | 1.9e-10 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 226 - 298 | 2.8e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 469 - 581 | 3e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 502 - 587 | 1.8e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 568 - 623 | 5.3e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 587 - 738 | 1.4e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 651 - 718 | 1e-06 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 655 - 709 | 8.9e-06 | Leucine rich repeat |
| C-JID | PF20160 | 786 - 930 | 8.7e-20 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 656 |
| Acc36I | ACCTGC | 1 cut(s) | 2083 |
| AccI | GTMKAC | 1 cut(s) | 1020 |
| AccII | CGCG | 1 cut(s) | 60 |
| AciI | CCGC | 4 cut(s) | 10, 194, 2267, 2763 |
| AclWI | GGATC | 5 cut(s) | 571, 1587, 2397, 2410, 2619 |
| AcoI | YGGCCR | 1 cut(s) | 1925 |
| AcsI | RAATTY | 6 cut(s) | 4, 638, 693, 750, 1304, 2370 |
| AcuI | CTGAAG | 4 cut(s) | 454, 1336, 1460, 1628 |
| AfaI | GTAC | 8 cut(s) | 198, 672, 1812, 1848, 1968, 2171, 2228, 2274 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 360, 1218 |
| AflII | CTTAAG | 1 cut(s) | 1865 |
| AflIII | ACRYGT | 2 cut(s) | 2349, 2616 |
| AjnI | CCWGG | 4 cut(s) | 1768, 1803, 2031, 2359 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 342, 374 |
| Alw21I | GWGCWC | 5 cut(s) | 147, 811, 906, 1751, 2559 |
| Alw26I | GTCTC | 3 cut(s) | 401, 1048, 2661 |
| AlwI | GGATC | 5 cut(s) | 571, 1587, 2397, 2410, 2619 |
| AoxI | GGCC | 3 cut(s) | 1220, 1648, 1925 |
| ApeKI | GCWGC | 4 cut(s) | 1491, 1533, 2419, 2760 |
| ApoI | RAATTY | 6 cut(s) | 4, 638, 693, 750, 1304, 2370 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1900, 1932, 2585, 2617 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 696, 1473, 1641 |
| AspS9I | GGNCC | 2 cut(s) | 1087, 1648 |
| AsuC2I | CCSGG | 2 cut(s) | 2580, 2672 |
| AsuHPI | GGTGA | 2 cut(s) | 2336, 2642 |
| AvaII | GGWCC | 1 cut(s) | 1087 |
| BaeGI | GKGCMC | 1 cut(s) | 420 |
| BalI | TGGCCA | 1 cut(s) | 1927 |
| BamHI | GGATCC | 1 cut(s) | 2402 |
| BanII | GRGCYC | 1 cut(s) | 811 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2488, 2520 |
| BauI | CACGAG | 1 cut(s) | 825 |
| BbsI | GAAGAC | 2 cut(s) | 1685, 2348 |
| Bbv12I | GWGCWC | 5 cut(s) | 147, 811, 906, 1751, 2559 |
| BbvI | GCAGC | 4 cut(s) | 1503, 1520, 2431, 2747 |
| BccI | CCATC | 8 cut(s) | 277, 1216, 1382, 1426, 1595, 1936, 2397, 2583 |
| BceAI | ACGGC | 1 cut(s) | 981 |
| BciT130I | CCWGG | 4 cut(s) | 1770, 1805, 2033, 2361 |
| BcnI | CCSGG | 2 cut(s) | 2580, 2672 |
| BcoDI | GTCTC | 3 cut(s) | 401, 1048, 2661 |
| BfaI | CTAG | 7 cut(s) | 108, 222, 545, 701, 995, 1598, 1950 |
| BfmI | CTRYAG | 3 cut(s) | 857, 969, 1675 |
| BfrI | CTTAAG | 1 cut(s) | 1865 |
| BfuAI | ACCTGC | 1 cut(s) | 2083 |
| BisI | GCNGC | 5 cut(s) | 1492, 1534, 2420, 2761, 2764 |
| BlsI | GCNGC | 5 cut(s) | 1493, 1535, 2421, 2762, 2765 |
| Bme1390I | CCNGG | 6 cut(s) | 1770, 1805, 2033, 2361, 2580, 2672 |
| Bme18I | GGWCC | 1 cut(s) | 1087 |
| BmgT120I | GGNCC | 2 cut(s) | 1087, 1648 |
| BmiI | GGNNCC | 1 cut(s) | 2404 |
| BmrFI | CCNGG | 6 cut(s) | 1770, 1805, 2033, 2361, 2580, 2672 |
| BmrI | ACTGGG | 1 cut(s) | 909 |
| BmsI | GCATC | 6 cut(s) | 181, 834, 1178, 1423, 1864, 2167 |
| BmuI | ACTGGG | 1 cut(s) | 909 |
| BoxI | GACNNNNGTC | 1 cut(s) | 889 |
| BpiI | GAAGAC | 2 cut(s) | 1685, 2348 |
| BpmI | CTGGAG | 2 cut(s) | 1391, 1826 |
| BpuEI | CTTGAG | 6 cut(s) | 475, 493, 516, 860, 1381, 1522 |
| BpuMI | CCSGG | 2 cut(s) | 2580, 2672 |
| Bsa29I | ATCGAT | 1 cut(s) | 1074 |
| BsaAI | YACGTR | 1 cut(s) | 742 |
| BsaI | GGTCTC | 1 cut(s) | 2661 |
| BsaJI | CCNNGG | 3 cut(s) | 1223, 2031, 2636 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2658, 2688 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 360, 1218 |
| Bse118I | RCCGGY | 1 cut(s) | 1089 |
| Bse1I | ACTGG | 1 cut(s) | 915 |
| Bse3DI | GCAATG | 3 cut(s) | 102, 1202, 1578 |
| BseBI | CCWGG | 4 cut(s) | 1770, 1805, 2033, 2361 |
| BseCI | ATCGAT | 1 cut(s) | 1074 |
| BseDI | CCNNGG | 3 cut(s) | 1223, 2031, 2636 |
| BseGI | GGATG | 9 cut(s) | 231, 328, 1193, 1208, 1414, 1418, 1879, 1898, 2575 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 360, 1218 |
| BseMI | GCAATG | 3 cut(s) | 102, 1202, 1578 |
| BseMII | CTCAG | 2 cut(s) | 383, 2685 |
| BseNI | ACTGG | 1 cut(s) | 915 |
| BseSI | GKGCMC | 1 cut(s) | 420 |
| BseXI | GCAGC | 4 cut(s) | 1503, 1520, 2431, 2747 |
| BseYI | CCCAGC | 2 cut(s) | 292, 1742 |
| BsgI | GTGCAG | 3 cut(s) | 1134, 2071, 2438 |
| Bsh1236I | CGCG | 1 cut(s) | 60 |
| BshFI | GGCC | 3 cut(s) | 1222, 1650, 1927 |
| BshVI | ATCGAT | 1 cut(s) | 1074 |
| BsiHKAI | GWGCWC | 5 cut(s) | 147, 811, 906, 1751, 2559 |
| BsiSI | CCGG | 3 cut(s) | 1090, 2579, 2672 |
| BsiWI | CGTACG | 1 cut(s) | 2226 |
| BslFI | GGGAC | 2 cut(s) | 1154, 1618 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 360, 1218 |
| BsmAI | GTCTC | 3 cut(s) | 401, 1048, 2661 |
| BsmBI | CGTCTC | 1 cut(s) | 401 |
| BsmFI | GGGAC | 2 cut(s) | 1154, 1618 |
| BsmI | GAATGC | 1 cut(s) | 1494 |
| BsnI | GGCC | 3 cut(s) | 1222, 1650, 1927 |
| Bso31I | GGTCTC | 1 cut(s) | 2661 |
| Bsp1286I | GDGCHC | 6 cut(s) | 147, 420, 811, 906, 1751, 2559 |
| Bsp143I | GATC | 7 cut(s) | 563, 649, 1579, 2326, 2402, 2509, 2611 |
| Bsp19I | CCATGG | 1 cut(s) | 2636 |
| BspACI | CCGC | 4 cut(s) | 10, 194, 2267, 2763 |
| BspANI | GGCC | 3 cut(s) | 1222, 1650, 1927 |
| BspCNI | CTCAG | 2 cut(s) | 384, 2686 |
| BspDI | ATCGAT | 1 cut(s) | 1074 |
| BspFNI | CGCG | 1 cut(s) | 60 |
| BspHI | TCATGA | 3 cut(s) | 180, 1290, 2182 |
| BspLI | GGNNCC | 1 cut(s) | 2404 |
| BspMAI | CTGCAG | 1 cut(s) | 1679 |
| BspMI | ACCTGC | 1 cut(s) | 2083 |
| BspPI | GGATC | 5 cut(s) | 571, 1587, 2397, 2410, 2619 |
| BspQI | GCTCTTC | 1 cut(s) | 1437 |
| BspTI | CTTAAG | 1 cut(s) | 1865 |
| BspTNI | GGTCTC | 1 cut(s) | 2661 |
| BsrDI | GCAATG | 3 cut(s) | 102, 1202, 1578 |
| BsrFI | RCCGGY | 1 cut(s) | 1089 |
| BsrI | ACTGG | 1 cut(s) | 915 |
| BssAI | RCCGGY | 1 cut(s) | 1089 |
| BssECI | CCNNGG | 3 cut(s) | 1223, 2031, 2636 |
| BssMI | GATC | 7 cut(s) | 563, 649, 1579, 2326, 2402, 2509, 2611 |
| BssNAI | GTATAC | 1 cut(s) | 1021 |
| BssSI | CACGAG | 1 cut(s) | 825 |
| BssT1I | CCWWGG | 1 cut(s) | 2636 |
| Bst1107I | GTATAC | 1 cut(s) | 1021 |
| Bst2BI | CACGAG | 1 cut(s) | 825 |
| Bst2UI | CCWGG | 4 cut(s) | 1770, 1805, 2033, 2361 |
| Bst4CI | ACNGT | 5 cut(s) | 149, 761, 1082, 2416, 2561 |
| Bst6I | CTCTTC | 3 cut(s) | 576, 1437, 2359 |
| BstAFI | CTTAAG | 1 cut(s) | 1865 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 853 |
| BstBAI | YACGTR | 1 cut(s) | 742 |
| BstC8I | GCNNGC | 4 cut(s) | 516, 1181, 1862, 2125 |
| BstDEI | CTNAG | 5 cut(s) | 392, 551, 618, 1058, 2694 |
| BstDSI | CCRYGG | 1 cut(s) | 2636 |
| BstF5I | GGATG | 9 cut(s) | 231, 328, 1193, 1208, 1414, 1418, 1879, 1898, 2575 |
| BstFNI | CGCG | 1 cut(s) | 60 |
| BstKTI | GATC | 7 cut(s) | 566, 652, 1582, 2329, 2405, 2512, 2614 |
| BstMAI | GTCTC | 3 cut(s) | 401, 1048, 2661 |
| BstMBI | GATC | 7 cut(s) | 563, 649, 1579, 2326, 2402, 2509, 2611 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 844, 853 |
| BstNI | CCWGG | 4 cut(s) | 1770, 1805, 2033, 2361 |
| BstNSI | RCATGY | 3 cut(s) | 518, 2353, 2620 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 889 |
| BstSCI | CCNGG | 6 cut(s) | 1768, 1803, 2031, 2359, 2578, 2670 |
| BstSFI | CTRYAG | 3 cut(s) | 857, 969, 1675 |
| BstSLI | GKGCMC | 1 cut(s) | 420 |
| BstSNI | TACGTA | 1 cut(s) | 742 |
| BstUI | CGCG | 1 cut(s) | 60 |
| BstV1I | GCAGC | 4 cut(s) | 1503, 1520, 2431, 2747 |
| BstV2I | GAAGAC | 2 cut(s) | 1685, 2348 |
| BstX2I | RGATCY | 3 cut(s) | 563, 1579, 2402 |
| BstYI | RGATCY | 3 cut(s) | 563, 1579, 2402 |
| BstZ17I | GTATAC | 1 cut(s) | 1021 |
| Bsu15I | ATCGAT | 1 cut(s) | 1074 |
| BsuRI | GGCC | 3 cut(s) | 1222, 1650, 1927 |
| BsuTUI | ATCGAT | 1 cut(s) | 1074 |
| BtgI | CCRYGG | 1 cut(s) | 2636 |
| BtsCI | GGATG | 9 cut(s) | 231, 328, 1193, 1208, 1414, 1418, 1879, 1898, 2575 |
| BtsI | GCAGTG | 2 cut(s) | 336, 2730 |
| BtsIMutI | CAGTG | 8 cut(s) | 336, 389, 1360, 2211, 2399, 2412, 2691, 2730 |
| BveI | ACCTGC | 1 cut(s) | 2083 |
| Cac8I | GCNNGC | 4 cut(s) | 516, 1181, 1862, 2125 |
| CciI | TCATGA | 3 cut(s) | 180, 1290, 2182 |
| Cfr10I | RCCGGY | 1 cut(s) | 1089 |
| Cfr13I | GGNCC | 2 cut(s) | 1087, 1648 |
| ClaI | ATCGAT | 1 cut(s) | 1074 |
| Csp6I | GTAC | 8 cut(s) | 197, 671, 1811, 1847, 1967, 2170, 2227, 2273 |
| CviQI | GTAC | 8 cut(s) | 197, 671, 1811, 1847, 1967, 2170, 2227, 2273 |
| DdeI | CTNAG | 5 cut(s) | 392, 551, 618, 1058, 2694 |
| DpnI | GATC | 7 cut(s) | 565, 651, 1581, 2328, 2404, 2511, 2613 |
| DpnII | GATC | 7 cut(s) | 563, 649, 1579, 2326, 2402, 2509, 2611 |
| DraI | TTTAAA | 1 cut(s) | 1458 |
| EaeI | YGGCCR | 1 cut(s) | 1925 |
| Eam1104I | CTCTTC | 3 cut(s) | 576, 1437, 2359 |
| EarI | CTCTTC | 3 cut(s) | 576, 1437, 2359 |
| Ecl136II | GAGCTC | 1 cut(s) | 809 |
| Eco105I | TACGTA | 1 cut(s) | 742 |
| Eco130I | CCWWGG | 1 cut(s) | 2636 |
| Eco24I | GRGCYC | 1 cut(s) | 811 |
| Eco31I | GGTCTC | 1 cut(s) | 2661 |
| Eco47I | GGWCC | 1 cut(s) | 1087 |
| Eco53kI | GAGCTC | 1 cut(s) | 809 |
| Eco57I | CTGAAG | 4 cut(s) | 454, 1336, 1460, 1628 |
| EcoICRI | GAGCTC | 1 cut(s) | 809 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1648 |
| EcoRI | GAATTC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 4 cut(s) | 1768, 1803, 2031, 2359 |
| EcoT14I | CCWWGG | 1 cut(s) | 2636 |
| EcoT22I | ATGCAT | 2 cut(s) | 849, 1879 |
| EcoT38I | GRGCYC | 1 cut(s) | 811 |
| ErhI | CCWWGG | 1 cut(s) | 2636 |
| Esp3I | CGTCTC | 1 cut(s) | 401 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 297, 329, 342, 374, 983, 1015 |
| FaqI | GGGAC | 2 cut(s) | 1154, 1618 |
| FauI | CCCGC | 2 cut(s) | 17, 2274 |
| FauNDI | CATATG | 1 cut(s) | 633 |
| FblI | GTMKAC | 1 cut(s) | 1020 |
| Fnu4HI | GCNGC | 5 cut(s) | 1492, 1534, 2420, 2761, 2764 |
| FokI | GGATG | 9 cut(s) | 238, 335, 1195, 1200, 1401, 1405, 1886, 1905, 2562 |
| FriOI | GRGCYC | 1 cut(s) | 811 |
| Fsp4HI | GCNGC | 5 cut(s) | 1492, 1534, 2420, 2761, 2764 |
| FspBI | CTAG | 7 cut(s) | 108, 222, 545, 701, 995, 1598, 1950 |
| GluI | GCNGC | 5 cut(s) | 1492, 1534, 2420, 2761, 2764 |
| GsaI | CCCAGC | 2 cut(s) | 296, 1746 |
| GsuI | CTGGAG | 2 cut(s) | 1391, 1826 |
| HaeIII | GGCC | 3 cut(s) | 1222, 1650, 1927 |
| HapII | CCGG | 3 cut(s) | 1090, 2579, 2672 |
| HincII | GTYRAC | 3 cut(s) | 954, 2090, 2211 |
| HindII | GTYRAC | 3 cut(s) | 954, 2090, 2211 |
| HindIII | AAGCTT | 3 cut(s) | 836, 1862, 2490 |
| HpaI | GTTAAC | 1 cut(s) | 954 |
| HpaII | CCGG | 3 cut(s) | 1090, 2579, 2672 |
| HphI | GGTGA | 2 cut(s) | 2336, 2642 |
| Hpy166II | GTNNAC | 6 cut(s) | 954, 1021, 1898, 2090, 2211, 2247 |
| Hpy8I | GTNNAC | 6 cut(s) | 954, 1021, 1898, 2090, 2211, 2247 |
| HpyAV | CCTTC | 8 cut(s) | 226, 478, 682, 1271, 1733, 2514, 2657, 2675 |
| HpyCH4III | ACNGT | 5 cut(s) | 149, 761, 1082, 2416, 2561 |
| HpyCH4IV | ACGT | 2 cut(s) | 410, 741 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 844, 853 |
| HpyF3I | CTNAG | 5 cut(s) | 392, 551, 618, 1058, 2694 |
| HpySE526I | ACGT | 2 cut(s) | 410, 741 |
| KspAI | GTTAAC | 1 cut(s) | 954 |
| Kzo9I | GATC | 7 cut(s) | 563, 649, 1579, 2326, 2402, 2509, 2611 |
| LguI | GCTCTTC | 1 cut(s) | 1437 |
| LmnI | GCTCC | 4 cut(s) | 172, 901, 2554, 2577 |
| Lsp1109I | GCAGC | 4 cut(s) | 1503, 1520, 2431, 2747 |
| LweI | GCATC | 6 cut(s) | 181, 834, 1178, 1423, 1864, 2167 |
| MaeI | CTAG | 7 cut(s) | 108, 222, 545, 701, 995, 1598, 1950 |
| MaeII | ACGT | 2 cut(s) | 410, 741 |
| MalI | GATC | 7 cut(s) | 565, 651, 1581, 2328, 2404, 2511, 2613 |
| MboI | GATC | 7 cut(s) | 563, 649, 1579, 2326, 2402, 2509, 2611 |
| MfeI | CAATTG | 2 cut(s) | 1632, 2431 |
| MflI | RGATCY | 3 cut(s) | 563, 1579, 2402 |
| MhlI | GDGCHC | 6 cut(s) | 147, 420, 811, 906, 1751, 2559 |
| MlsI | TGGCCA | 1 cut(s) | 1927 |
| MluNI | TGGCCA | 1 cut(s) | 1927 |
| MlyI | GAGTC | 2 cut(s) | 2095, 2210 |
| MmeI | TCCRAC | 6 cut(s) | 46, 588, 907, 1236, 1977, 2589 |
| Mox20I | TGGCCA | 1 cut(s) | 1927 |
| Mph1103I | ATGCAT | 2 cut(s) | 849, 1879 |
| MroXI | GAANNNNTTC | 3 cut(s) | 696, 1473, 1641 |
| MscI | TGGCCA | 1 cut(s) | 1927 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1295, 1499, 1882, 2322 |
| Msp20I | TGGCCA | 1 cut(s) | 1927 |
| MspA1I | CMGCKG | 1 cut(s) | 2269 |
| MspCI | CTTAAG | 1 cut(s) | 1865 |
| MspI | CCGG | 3 cut(s) | 1090, 2579, 2672 |
| MspR9I | CCNGG | 6 cut(s) | 1770, 1805, 2033, 2361, 2580, 2672 |
| MunI | CAATTG | 2 cut(s) | 1632, 2431 |
| Mva1269I | GAATGC | 1 cut(s) | 1494 |
| MvaI | CCWGG | 4 cut(s) | 1770, 1805, 2033, 2361 |
| MvnI | CGCG | 1 cut(s) | 60 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 844, 853 |
| NciI | CCSGG | 2 cut(s) | 2580, 2672 |
| NcoI | CCATGG | 1 cut(s) | 2636 |
| NdeI | CATATG | 1 cut(s) | 633 |
| NdeII | GATC | 7 cut(s) | 563, 649, 1579, 2326, 2402, 2509, 2611 |
| NlaIV | GGNNCC | 1 cut(s) | 2404 |
| NmeAIII | GCCGAG | 1 cut(s) | 1248 |
| NmuCI | GTSAC | 7 cut(s) | 431, 820, 827, 1256, 1319, 1982, 2698 |
| NsiI | ATGCAT | 2 cut(s) | 849, 1879 |
| NspI | RCATGY | 3 cut(s) | 518, 2353, 2620 |
| PaeI | GCATGC | 1 cut(s) | 518 |
| PagI | TCATGA | 3 cut(s) | 180, 1290, 2182 |
| PciI | ACATGT | 2 cut(s) | 2349, 2616 |
| PciSI | GCTCTTC | 1 cut(s) | 1437 |
| PctI | GAATGC | 1 cut(s) | 1494 |
| PdmI | GAANNNNTTC | 3 cut(s) | 696, 1473, 1641 |
| PfeI | GAWTC | 8 cut(s) | 680, 1071, 1105, 1228, 1341, 1790, 2236, 2726 |
| Pfl23II | CGTACG | 1 cut(s) | 2226 |
| PflFI | GACNNNGTC | 1 cut(s) | 2672 |
| PfoI | TCCNGGA | 1 cut(s) | 2359 |
| PkrI | GCNGC | 5 cut(s) | 1493, 1535, 2421, 2762, 2765 |
| PleI | GAGTC | 2 cut(s) | 2094, 2209 |
| PpsI | GAGTC | 2 cut(s) | 2094, 2209 |
| Ppu21I | YACGTR | 1 cut(s) | 742 |
| PscI | ACATGT | 2 cut(s) | 2349, 2616 |
| PshAI | GACNNNNGTC | 1 cut(s) | 889 |
| PsiI | TTATAA | 1 cut(s) | 656 |
| Psp124BI | GAGCTC | 1 cut(s) | 811 |
| Psp6I | CCWGG | 4 cut(s) | 1768, 1803, 2031, 2359 |
| PspFI | CCCAGC | 2 cut(s) | 292, 1742 |
| PspGI | CCWGG | 4 cut(s) | 1768, 1803, 2031, 2359 |
| PspLI | CGTACG | 1 cut(s) | 2226 |
| PspN4I | GGNNCC | 1 cut(s) | 2404 |
| PspPI | GGNCC | 2 cut(s) | 1087, 1648 |
| PstI | CTGCAG | 1 cut(s) | 1679 |
| PsuI | RGATCY | 3 cut(s) | 563, 1579, 2402 |
| PsyI | GACNNNGTC | 1 cut(s) | 2672 |
| RsaI | GTAC | 8 cut(s) | 198, 672, 1812, 1848, 1968, 2171, 2228, 2274 |
| RsaNI | GTAC | 8 cut(s) | 197, 671, 1811, 1847, 1967, 2170, 2227, 2273 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1295, 1499, 1882, 2322 |
| SacI | GAGCTC | 1 cut(s) | 811 |
| SapI | GCTCTTC | 1 cut(s) | 1437 |
| SatI | GCNGC | 5 cut(s) | 1492, 1534, 2420, 2761, 2764 |
| Sau3AI | GATC | 7 cut(s) | 563, 649, 1579, 2326, 2402, 2509, 2611 |
| Sau96I | GGNCC | 2 cut(s) | 1087, 1648 |
| SchI | GAGTC | 2 cut(s) | 2095, 2210 |
| ScrFI | CCNGG | 6 cut(s) | 1770, 1805, 2033, 2361, 2580, 2672 |
| SduI | GDGCHC | 6 cut(s) | 147, 420, 811, 906, 1751, 2559 |
| SfaNI | GCATC | 6 cut(s) | 181, 834, 1178, 1423, 1864, 2167 |
| SfcI | CTRYAG | 3 cut(s) | 857, 969, 1675 |
| SinI | GGWCC | 1 cut(s) | 1087 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1295, 1499, 1882, 2322 |
| SmlI | CTYRAG | 7 cut(s) | 454, 508, 531, 839, 1396, 1537, 1865 |
| SmoI | CTYRAG | 7 cut(s) | 454, 508, 531, 839, 1396, 1537, 1865 |
| SnaBI | TACGTA | 1 cut(s) | 742 |
| SphI | GCATGC | 1 cut(s) | 518 |
| SsiI | CCGC | 4 cut(s) | 10, 194, 2267, 2763 |
| SspMI | CTAG | 7 cut(s) | 108, 222, 545, 701, 995, 1598, 1950 |
| SstI | GAGCTC | 1 cut(s) | 811 |
| StyD4I | CCNGG | 6 cut(s) | 1768, 1803, 2031, 2359, 2578, 2670 |
| StyI | CCWWGG | 1 cut(s) | 2636 |
| TaaI | ACNGT | 5 cut(s) | 149, 761, 1082, 2416, 2561 |
| TaiI | ACGT | 2 cut(s) | 413, 744 |
| TaqI | TCGA | 5 cut(s) | 1074, 1236, 1386, 1751, 2788 |
| TatI | WGTACW | 2 cut(s) | 1846, 2169 |
| TauI | GCSGC | 1 cut(s) | 2766 |
| TfiI | GAWTC | 8 cut(s) | 680, 1071, 1105, 1228, 1341, 1790, 2236, 2726 |
| TscAI | CASTG | 8 cut(s) | 343, 396, 1360, 2211, 2399, 2419, 2698, 2737 |
| TseFI | GTSAC | 7 cut(s) | 431, 820, 827, 1256, 1319, 1982, 2698 |
| TseI | GCWGC | 4 cut(s) | 1491, 1533, 2419, 2760 |
| Tsp45I | GTSAC | 7 cut(s) | 431, 820, 827, 1256, 1319, 1982, 2698 |
| TspGWI | ACGGA | 2 cut(s) | 1200, 1679 |
| TspRI | CASTG | 8 cut(s) | 343, 396, 1360, 2211, 2399, 2419, 2698, 2737 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2672 |
| Vha464I | CTTAAG | 1 cut(s) | 1865 |
| VpaK11BI | GGWCC | 1 cut(s) | 1087 |
| XapI | RAATTY | 6 cut(s) | 4, 638, 693, 750, 1304, 2370 |
| XbaI | TCTAGA | 2 cut(s) | 700, 1597 |
| XceI | RCATGY | 3 cut(s) | 518, 2353, 2620 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1766 |
| XmiI | GTMKAC | 1 cut(s) | 1020 |
| XmnI | GAANNNNTTC | 3 cut(s) | 696, 1473, 1641 |
| XspI | CTAG | 7 cut(s) | 108, 222, 545, 701, 995, 1598, 1950 |
| Zsp2I | ATGCAT | 2 cut(s) | 849, 1879 |