Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003385.1

Orthogroup ID

OG0000067

Physical Location & Seq

Genomic Coordinates Forward (+)

36580 .. 36927

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003385.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgacggagctgcaggaactagatctagatgggactgcaattaaagagcttccctcatcaattaataaccttacagagcttgcttctttgaccctccatggttgcagaaaacttaagaatcttccaagcagcattcatatgaaagctcttgaattccttgatctttcgggttgctcgaattttgaggagttccccgacattccagaagttatgatggagctatcaaggcttcatttagatgagactgcaattagatgcttaccgtcatcaattgaacggcttcagggcctcacattcttggatgagaaactgcagaagtcttgtatctcttccagacaatatctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

115

Amino Acids

12.99

Weight (kDa)

4.86

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica	MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis	pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis	RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata	RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora	Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii	Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa	Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha	Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana	Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	152, 178
AcuI	CTGAAG	1 cut(s)	266
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	152, 275
AluBI	AGCT	5 cut(s)	10, 49, 79, 146, 220
AluI	AGCT	5 cut(s)	10, 49, 79, 146, 220
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	10, 129
ApoI	RAATTY	2 cut(s)	152, 178
AseI	ATTAAT	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	2 cut(s)	23, 208
BceAI	ACGGC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	20, 26
BfmI	CTRYAG	2 cut(s)	11, 311
BfrI	CTTAAG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	2 cut(s)	11, 130
BlsI	GCNGC	2 cut(s)	12, 131
BmgT120I	GGNCC	1 cut(s)	286
BmsI	GCATC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BsaJI	CCNNGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	141
BshFI	GGCC	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	22, 160
Bsp19I	CCATGG	1 cut(s)	97
BspANI	GGCC	1 cut(s)	288
BspMAI	CTGCAG	2 cut(s)	15, 315
BspTI	CTTAAG	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	22, 160
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	334
BstAFI	CTTAAG	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	25, 163
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	2 cut(s)	22, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstSFI	CTRYAG	2 cut(s)	11, 311
BstV1I	GCAGC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	286
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	8 cut(s)	10, 49, 79, 146, 220, 229, 280, 288
CviKI_1	RGCY	8 cut(s)	10, 49, 79, 146, 220, 229, 280, 288
DpnI	GATC	2 cut(s)	24, 162
DpnII	GATC	2 cut(s)	22, 160
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	101
FaiI	YATR	4 cut(s)	99, 138, 140, 212
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	97
FauNDI	CATATG	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	11, 130
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	11, 130
FspBI	CTAG	2 cut(s)	20, 26
GluI	GCNGC	2 cut(s)	11, 130
HaeIII	GGCC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	1 cut(s)	118
Hpy188III	TCNNGA	4 cut(s)	26, 149, 203, 333
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	5 cut(s)	13, 38, 105, 248, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	2 cut(s)	22, 160
LmnI	GCTCC	2 cut(s)	7, 217
LpnPI	CCDG	2 cut(s)	216, 269
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	2 cut(s)	20, 26
MalI	GATC	2 cut(s)	24, 162
MboI	GATC	2 cut(s)	22, 160
MboII	GAAGA	2 cut(s)	113, 321
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	6 cut(s)	39, 60, 152, 178, 249, 270
MnlI	CCTC	4 cut(s)	64, 104, 178, 299
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	3 cut(s)	42, 63, 114
MslI	CAYNNNNRTG	2 cut(s)	137, 237
MspCI	CTTAAG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	97
NdeI	CATATG	1 cut(s)	138
NdeII	GATC	2 cut(s)	22, 160
NlaIII	CATG	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PctI	GAATGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	12, 131
PshBI	ATTAAT	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	286
PstI	CTGCAG	2 cut(s)	15, 315
PsuI	RGATCY	1 cut(s)	22
RseI	CAYNNNNRTG	2 cut(s)	137, 237
SaqAI	TTAA	3 cut(s)	42, 63, 114
SatI	GCNGC	2 cut(s)	11, 130
Sau3AI	GATC	2 cut(s)	22, 160
Sau96I	GGNCC	1 cut(s)	286
SetI	ASST	6 cut(s)	12, 51, 72, 81, 148, 222
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	2 cut(s)	11, 311
SmiMI	CAYNNNNRTG	2 cut(s)	137, 237
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	6 cut(s)	39, 60, 152, 178, 249, 270
SspMI	CTAG	2 cut(s)	20, 26
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	176
TasI	AATT	6 cut(s)	39, 60, 152, 178, 249, 270
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	42, 63, 114
Tru9I	TTAA	3 cut(s)	42, 63, 114
TseI	GCWGC	2 cut(s)	10, 129
TspDTI	ATGAA	3 cut(s)	125, 155, 221
TspGWI	ACGGA	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	113
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	2 cut(s)	152, 178
XbaI	TCTAGA	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	2 cut(s)	20, 26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.