Rh1BG367900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
49801855 .. 49803518
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG367900.1

Sequence Viewer

Length: 567 bp
ATGAATCTAAACATGCGGCAGCCCCAAGTTCATGTGAACAGTAGTGAGACTGCAGTTTTTTTTATGGACCCATATGAATTGAGAAACAAAGAAACAGATTGGGTAGAAATTTTGAGGGAGATAGAGTCGTCAAGTAACGGACCTCGTCTCTTTCATGGTAAGTATATGGAAGTGCCAAATGAAAGCATGACTCAGCCCGCAATTCATGTTGAAGGACTCGGAGCACCATTCTTTCCGGACCAGTTGGAAATAAGAAAGAGTGAAACAGAGTGGGAGGCAGAGTCATTGGAGTCTACTGAGCACTCAGAAAGAGAAGGAGACAGAGTCACCAGAGTCTCTGATGATGGGGAGATATCGGAGTTGGGCAGCCACAGTGGTCTGGTGGTGCCAAATTCAGAGAGTGAGGGCAAAGAAGAGAAAGAATTGATTGGGGACGAGTCGTTGGCTGGAAGAGGGTTGTTAGGGCCACTATGCAGCTGCTTCTACTGGCTGGGTGAAGTATGGCGTGGAAAGAGAGAAGTAGCAGAAGCAGAGGAGTTTGGCTTGCATGAAAGGAAAAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.38

Weight (kDa)

4.67

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 385
AccI GTMKAC 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 2 cut(s) 16, 198
AcsI RAATTY 2 cut(s) 108, 391
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 1 cut(s) 477
AluI AGCT 1 cut(s) 477
Alw21I GWGCWC 2 cut(s) 226, 303
Alw26I GTCTC 4 cut(s) 41, 152, 312, 340
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 1 cut(s) 464
ApeKI GCWGC 4 cut(s) 19, 366, 474, 477
ApoI RAATTY 2 cut(s) 108, 391
AspS9I GGNCC 4 cut(s) 67, 140, 238, 464
AsuHPI GGTGA 2 cut(s) 319, 506
AvaII GGWCC 3 cut(s) 67, 140, 238
BanI GGYRCC 1 cut(s) 385
Bbv12I GWGCWC 2 cut(s) 226, 303
BbvI GCAGC 4 cut(s) 31, 378, 464, 486
BccI CCATC 1 cut(s) 338
BcoDI GTCTC 4 cut(s) 41, 152, 312, 340
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 5 cut(s) 17, 20, 367, 475, 478
BlsI GCNGC 5 cut(s) 18, 21, 368, 476, 479
Bme18I GGWCC 3 cut(s) 67, 140, 238
BmgT120I GGNCC 4 cut(s) 67, 140, 238, 464
BmiI GGNNCC 2 cut(s) 69, 387
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 6 cut(s) 110, 140, 266, 296, 309, 339
Bse1I ACTGG 2 cut(s) 241, 491
BseAI TCCGGA 1 cut(s) 235
BseMII CTCAG 3 cut(s) 206, 288, 318
BseNI ACTGG 2 cut(s) 241, 491
BseRI GAGGAG 1 cut(s) 548
BseXI GCAGC 4 cut(s) 31, 378, 464, 486
BseYI CCCAGC 1 cut(s) 490
BshFI GGCC 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 385
BsiHKAI GWGCWC 2 cut(s) 226, 303
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 446
BsmAI GTCTC 4 cut(s) 41, 152, 312, 340
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 1 cut(s) 466
Bsp1286I GDGCHC 2 cut(s) 226, 303
Bsp13I TCCGGA 1 cut(s) 235
BspACI CCGC 2 cut(s) 16, 198
BspANI GGCC 1 cut(s) 466
BspCNI CTCAG 3 cut(s) 205, 289, 317
BspEI TCCGGA 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 69, 387
BspMAI CTGCAG 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 385
BsrI ACTGG 2 cut(s) 241, 491
Bst4CI ACNGT 2 cut(s) 41, 374
Bst6I CTCTTC 2 cut(s) 408, 445
BstC8I GCNNGC 2 cut(s) 198, 545
BstDEI CTNAG 3 cut(s) 192, 297, 304
BstMAI GTCTC 4 cut(s) 41, 152, 312, 340
BstNSI RCATGY 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 4 cut(s) 31, 378, 464, 486
BsuRI GGCC 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 2 cut(s) 198, 545
Cfr13I GGNCC 4 cut(s) 67, 140, 238, 464
CviAII CATG 6 cut(s) 13, 32, 155, 187, 206, 548
CviJI RGCY 8 cut(s) 22, 196, 369, 446, 466, 477, 490, 543
CviKI_1 RGCY 8 cut(s) 22, 196, 369, 446, 466, 477, 490, 543
DdeI CTNAG 3 cut(s) 192, 297, 304
Eam1104I CTCTTC 2 cut(s) 408, 445
EarI CTCTTC 2 cut(s) 408, 445
Eco32I GATATC 1 cut(s) 354
Eco47I GGWCC 3 cut(s) 67, 140, 238
EcoRV GATATC 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 6 cut(s) 16, 35, 158, 190, 209, 551
FaqI GGGAC 1 cut(s) 446
FatI CATG 6 cut(s) 12, 31, 154, 186, 205, 547
FauI CCCGC 1 cut(s) 205
FauNDI CATATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 5 cut(s) 17, 20, 367, 475, 478
Fsp4HI GCNGC 5 cut(s) 17, 20, 367, 475, 478
GluI GCNGC 5 cut(s) 17, 20, 367, 475, 478
GsaI CCCAGC 1 cut(s) 494
HaeIII GGCC 1 cut(s) 466
HapII CCGG 1 cut(s) 236
Hin1II CATG 6 cut(s) 16, 35, 158, 190, 209, 551
HinfI GANTC 9 cut(s) 4, 125, 190, 216, 281, 290, 324, 333, 437
HpaII CCGG 1 cut(s) 236
HphI GGTGA 2 cut(s) 319, 506
Hpy166II GTNNAC 2 cut(s) 37, 294
Hpy188I TCNGA 5 cut(s) 221, 307, 340, 358, 397
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 2 cut(s) 37, 294
HpyAV CCTTC 2 cut(s) 206, 308
HpyCH4III ACNGT 2 cut(s) 41, 374
HpyCH4V TGCA 3 cut(s) 53, 474, 547
HpyF3I CTNAG 3 cut(s) 192, 297, 304
Hsp92II CATG 6 cut(s) 16, 35, 158, 190, 209, 551
Kpn2I TCCGGA 1 cut(s) 235
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 7 cut(s) 249, 254, 343, 365, 432, 472, 476
Lsp1109I GCAGC 4 cut(s) 31, 378, 464, 486
MaeIII GTNAC 2 cut(s) 134, 325
MboII GAAGA 2 cut(s) 425, 462
MhlI GDGCHC 2 cut(s) 226, 303
MluCI AATT 5 cut(s) 77, 108, 201, 391, 422
MlyI GAGTC 8 cut(s) 134, 184, 210, 290, 299, 333, 342, 446
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 6 cut(s) 108, 153, 268, 397, 446, 526
MroI TCCGGA 1 cut(s) 235
MspA1I CMGCKG 1 cut(s) 477
MspI CCGG 1 cut(s) 236
NdeI CATATG 1 cut(s) 73
NlaIII CATG 6 cut(s) 16, 35, 158, 190, 209, 551
NlaIV GGNNCC 2 cut(s) 69, 387
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 16
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 2 cut(s) 144, 323
PkrI GCNGC 5 cut(s) 18, 21, 368, 476, 479
PleI GAGTC 8 cut(s) 133, 184, 210, 289, 298, 332, 341, 445
PpsI GAGTC 8 cut(s) 133, 184, 210, 289, 298, 332, 341, 445
PspFI CCCAGC 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 69, 387
PspPI GGNCC 4 cut(s) 67, 140, 238, 464
PstI CTGCAG 1 cut(s) 55
PsyI GACNNNGTC 2 cut(s) 144, 323
PvuII CAGCTG 1 cut(s) 477
SatI GCNGC 5 cut(s) 17, 20, 367, 475, 478
Sau96I GGNCC 4 cut(s) 67, 140, 238, 464
SchI GAGTC 8 cut(s) 134, 184, 210, 290, 299, 333, 342, 446
SduI GDGCHC 2 cut(s) 226, 303
SetI ASST 2 cut(s) 145, 479
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 3 cut(s) 67, 140, 238
Sse9I AATT 5 cut(s) 77, 108, 201, 391, 422
SsiI CCGC 2 cut(s) 16, 198
TaaI ACNGT 2 cut(s) 41, 374
TasI AATT 5 cut(s) 77, 108, 201, 391, 422
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 4 cut(s) 19, 366, 474, 477
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 7 cut(s) 17, 20, 90, 143, 194, 195, 564
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 379
Tth111I GACNNNGTC 2 cut(s) 144, 323
VpaK11BI GGWCC 3 cut(s) 67, 140, 238
XapI RAATTY 2 cut(s) 108, 391
XceI RCATGY 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.