TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 14 - 188 | 1.6e-49 | TIR domain |
| TIR_2 | PF13676 | 16 - 112 | 1.3e-13 | TIR domain |
| NB-ARC | PF00931 | 193 - 360 | 2.2e-22 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 433 - 501 | 2.4e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 701 - 812 | 1.1e-11 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 758 - 842 | 5.2e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1131 |
| AccB1I | GGYRCC | 2 cut(s) | 307, 1881 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 274, 304, 1442 |
| AccI | GTMKAC | 2 cut(s) | 402, 2593 |
| AccIII | TCCGGA | 4 cut(s) | 23, 2189, 2461, 2653 |
| AciI | CCGC | 3 cut(s) | 292, 447, 2545 |
| AclWI | GGATC | 3 cut(s) | 323, 825, 1508 |
| AcsI | RAATTY | 3 cut(s) | 801, 876, 1990 |
| AcuI | CTGAAG | 3 cut(s) | 827, 1053, 2093 |
| AdeI | CACNNNGTG | 1 cut(s) | 249 |
| AfaI | GTAC | 8 cut(s) | 1000, 1191, 1447, 1629, 1818, 1998, 2089, 2666 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 274, 304, 947, 1397, 1442 |
| AflII | CTTAAG | 2 cut(s) | 350, 2063 |
| AflIII | ACRYGT | 4 cut(s) | 74, 1001, 1630, 1938 |
| AjiI | CACGTC | 1 cut(s) | 1239 |
| AjnI | CCWGG | 1 cut(s) | 297 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1193, 1225, 1894, 1926 |
| AleI | CACNNNNGTG | 1 cut(s) | 79 |
| Alw21I | GWGCWC | 1 cut(s) | 2516 |
| Alw26I | GTCTC | 4 cut(s) | 1245, 1657, 2554, 2624 |
| AlwI | GGATC | 3 cut(s) | 323, 825, 1508 |
| Ama87I | CYCGRG | 2 cut(s) | 125, 199 |
| Aor13HI | TCCGGA | 4 cut(s) | 23, 2189, 2461, 2653 |
| AoxI | GGCC | 1 cut(s) | 1381 |
| ApeKI | GCWGC | 5 cut(s) | 5, 8, 2157, 2275, 2298 |
| ApoI | RAATTY | 3 cut(s) | 801, 876, 1990 |
| AseI | ATTAAT | 2 cut(s) | 2259, 2400 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 577, 789, 1551 |
| AspLEI | GCGC | 2 cut(s) | 178, 1132 |
| AspS9I | GGNCC | 3 cut(s) | 265, 910, 2146 |
| AsuC2I | CCSGG | 1 cut(s) | 1518 |
| AsuHPI | GGTGA | 6 cut(s) | 537, 779, 1652, 1905, 2099, 2713 |
| AsuII | TTCGAA | 1 cut(s) | 1850 |
| AvaI | CYCGRG | 2 cut(s) | 125, 199 |
| AvaII | GGWCC | 3 cut(s) | 265, 910, 2146 |
| BaeGI | GKGCMC | 3 cut(s) | 312, 1886, 2250 |
| BanI | GGYRCC | 2 cut(s) | 307, 1881 |
| BanII | GRGCYC | 2 cut(s) | 132, 1020 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2657, 2689 |
| BauI | CACGAG | 1 cut(s) | 721 |
| BbsI | GAAGAC | 3 cut(s) | 75, 1130, 2450 |
| Bbv12I | GWGCWC | 1 cut(s) | 2516 |
| BbvI | GCAGC | 3 cut(s) | 2144, 2262, 2285 |
| BccI | CCATC | 6 cut(s) | 102, 554, 827, 1277, 2119, 2219 |
| BciT130I | CCWGG | 1 cut(s) | 299 |
| BclI | TGATCA | 2 cut(s) | 706, 1801 |
| BcnI | CCSGG | 1 cut(s) | 1518 |
| BcoDI | GTCTC | 4 cut(s) | 1245, 1657, 2554, 2624 |
| BfaI | CTAG | 7 cut(s) | 681, 863, 978, 1172, 1316, 1451, 1604 |
| BfmI | CTRYAG | 3 cut(s) | 1945, 2276, 2440 |
| BfoI | RGCGCY | 1 cut(s) | 179 |
| BfrI | CTTAAG | 2 cut(s) | 350, 2063 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2295 |
| BglII | AGATCT | 2 cut(s) | 270, 1421 |
| BisI | GCNGC | 6 cut(s) | 6, 9, 447, 2158, 2276, 2299 |
| BlsI | GCNGC | 6 cut(s) | 7, 10, 448, 2159, 2277, 2300 |
| Bme1390I | CCNGG | 2 cut(s) | 299, 1518 |
| Bme18I | GGWCC | 3 cut(s) | 265, 910, 2146 |
| BmeT110I | CYCGRG | 2 cut(s) | 125, 199 |
| BmgBI | CACGTC | 1 cut(s) | 1239 |
| BmgT120I | GGNCC | 3 cut(s) | 265, 910, 2146 |
| BmiI | GGNNCC | 4 cut(s) | 296, 309, 1883, 1975 |
| BmrFI | CCNGG | 2 cut(s) | 299, 1518 |
| BmrI | ACTGGG | 3 cut(s) | 1004, 1226, 2517 |
| BmsI | GCATC | 4 cut(s) | 245, 669, 1090, 1446 |
| BmuI | ACTGGG | 3 cut(s) | 1004, 1226, 2517 |
| BpiI | GAAGAC | 3 cut(s) | 75, 1130, 2450 |
| BpmI | CTGGAG | 3 cut(s) | 635, 1661, 2648 |
| Bpu14I | TTCGAA | 1 cut(s) | 1850 |
| BpuEI | CTTGAG | 3 cut(s) | 1093, 2153, 2330 |
| BpuMI | CCSGG | 1 cut(s) | 1518 |
| Bsa29I | ATCGAT | 1 cut(s) | 2004 |
| BsaAI | YACGTR | 2 cut(s) | 77, 1633 |
| BsaJI | CCNNGG | 1 cut(s) | 2537 |
| BsaWI | WCCGGW | 4 cut(s) | 23, 2189, 2461, 2653 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 274, 304, 947, 1397, 1442 |
| Bse118I | RCCGGY | 1 cut(s) | 1059 |
| Bse1I | ACTGG | 5 cut(s) | 267, 432, 999, 1232, 2512 |
| BseAI | TCCGGA | 4 cut(s) | 23, 2189, 2461, 2653 |
| BseBI | CCWGG | 1 cut(s) | 299 |
| BseCI | ATCGAT | 1 cut(s) | 2004 |
| BseDI | CCNNGG | 1 cut(s) | 2537 |
| BseGI | GGATG | 6 cut(s) | 20, 490, 628, 838, 1297, 2111 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 274, 304, 947, 1397, 1442 |
| BseMII | CTCAG | 4 cut(s) | 1394, 2040, 2198, 2652 |
| BseNI | ACTGG | 5 cut(s) | 267, 432, 999, 1232, 2512 |
| BseRI | GAGGAG | 2 cut(s) | 1675, 2327 |
| BseSI | GKGCMC | 3 cut(s) | 312, 1886, 2250 |
| BseXI | GCAGC | 3 cut(s) | 2144, 2262, 2285 |
| BshFI | GGCC | 1 cut(s) | 1383 |
| BshNI | GGYRCC | 2 cut(s) | 307, 1881 |
| BshVI | ATCGAT | 1 cut(s) | 2004 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2516 |
| BsiHKCI | CYCGRG | 2 cut(s) | 125, 199 |
| BsiSI | CCGG | 6 cut(s) | 24, 1060, 1517, 2190, 2462, 2654 |
| BslFI | GGGAC | 3 cut(s) | 1499, 2242, 2383 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 274, 304, 947, 1397, 1442 |
| BsmAI | GTCTC | 4 cut(s) | 1245, 1657, 2554, 2624 |
| BsmBI | CGTCTC | 1 cut(s) | 1245 |
| BsmFI | GGGAC | 3 cut(s) | 1499, 2242, 2383 |
| BsnI | GGCC | 1 cut(s) | 1383 |
| BsoBI | CYCGRG | 2 cut(s) | 125, 199 |
| Bsp119I | TTCGAA | 1 cut(s) | 1850 |
| Bsp1286I | GDGCHC | 6 cut(s) | 132, 312, 1020, 1886, 2250, 2516 |
| Bsp13I | TCCGGA | 4 cut(s) | 23, 2189, 2461, 2653 |
| Bsp1407I | TGTACA | 3 cut(s) | 1189, 1816, 2087 |
| Bsp143I | GATC | 8 cut(s) | 270, 328, 706, 817, 1421, 1513, 1801, 2263 |
| BspACI | CCGC | 3 cut(s) | 292, 447, 2545 |
| BspANI | GGCC | 1 cut(s) | 1383 |
| BspCNI | CTCAG | 4 cut(s) | 1395, 2041, 2199, 2653 |
| BspDI | ATCGAT | 1 cut(s) | 2004 |
| BspEI | TCCGGA | 4 cut(s) | 23, 2189, 2461, 2653 |
| BspHI | TCATGA | 4 cut(s) | 1369, 1543, 1804, 1824 |
| BspLI | GGNNCC | 4 cut(s) | 296, 309, 1883, 1975 |
| BspMAI | CTGCAG | 2 cut(s) | 2280, 2444 |
| BspPI | GGATC | 3 cut(s) | 323, 825, 1508 |
| BspQI | GCTCTTC | 1 cut(s) | 2196 |
| BspT104I | TTCGAA | 1 cut(s) | 1850 |
| BspT107I | GGYRCC | 2 cut(s) | 307, 1881 |
| BspTI | CTTAAG | 2 cut(s) | 350, 2063 |
| BsrFI | RCCGGY | 1 cut(s) | 1059 |
| BsrGI | TGTACA | 3 cut(s) | 1189, 1816, 2087 |
| BsrI | ACTGG | 5 cut(s) | 267, 432, 999, 1232, 2512 |
| BssAI | RCCGGY | 1 cut(s) | 1059 |
| BssECI | CCNNGG | 1 cut(s) | 2537 |
| BssMI | GATC | 8 cut(s) | 270, 328, 706, 817, 1421, 1513, 1801, 2263 |
| BssNAI | GTATAC | 1 cut(s) | 2594 |
| BssSI | CACGAG | 1 cut(s) | 721 |
| BssT1I | CCWWGG | 1 cut(s) | 2537 |
| Bst1107I | GTATAC | 1 cut(s) | 2594 |
| Bst2BI | CACGAG | 1 cut(s) | 721 |
| Bst2UI | CCWGG | 1 cut(s) | 299 |
| Bst4CI | ACNGT | 3 cut(s) | 231, 1189, 1814 |
| Bst6I | CTCTTC | 2 cut(s) | 405, 2196 |
| BstAFI | CTTAAG | 2 cut(s) | 350, 2063 |
| BstAUI | TGTACA | 3 cut(s) | 1189, 1816, 2087 |
| BstBAI | YACGTR | 2 cut(s) | 77, 1633 |
| BstBI | TTCGAA | 1 cut(s) | 1850 |
| BstC8I | GCNNGC | 1 cut(s) | 2296 |
| BstDEI | CTNAG | 8 cut(s) | 152, 1403, 1581, 2049, 2207, 2221, 2517, 2661 |
| BstF5I | GGATG | 6 cut(s) | 20, 490, 628, 838, 1297, 2111 |
| BstH2I | RGCGCY | 1 cut(s) | 179 |
| BstHHI | GCGC | 2 cut(s) | 178, 1132 |
| BstKTI | GATC | 8 cut(s) | 273, 331, 709, 820, 1424, 1516, 1804, 2266 |
| BstMAI | GTCTC | 4 cut(s) | 1245, 1657, 2554, 2624 |
| BstMBI | GATC | 8 cut(s) | 270, 328, 706, 817, 1421, 1513, 1801, 2263 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 610, 1678, 2295, 2353 |
| BstNI | CCWGG | 1 cut(s) | 299 |
| BstNSI | RCATGY | 3 cut(s) | 1005, 1329, 1942 |
| BstSCI | CCNGG | 2 cut(s) | 297, 1516 |
| BstSFI | CTRYAG | 3 cut(s) | 1945, 2276, 2440 |
| BstSLI | GKGCMC | 3 cut(s) | 312, 1886, 2250 |
| BstV1I | GCAGC | 3 cut(s) | 2144, 2262, 2285 |
| BstV2I | GAAGAC | 3 cut(s) | 75, 1130, 2450 |
| BstX2I | RGATCY | 4 cut(s) | 270, 328, 1421, 1513 |
| BstYI | RGATCY | 4 cut(s) | 270, 328, 1421, 1513 |
| BstZ17I | GTATAC | 1 cut(s) | 2594 |
| Bsu15I | ATCGAT | 1 cut(s) | 2004 |
| BsuRI | GGCC | 1 cut(s) | 1383 |
| BsuTUI | ATCGAT | 1 cut(s) | 2004 |
| BtrI | CACGTC | 1 cut(s) | 1239 |
| BtsCI | GGATG | 6 cut(s) | 20, 490, 628, 838, 1297, 2111 |
| BtsIMutI | CAGTG | 3 cut(s) | 1810, 2046, 2759 |
| Cac8I | GCNNGC | 1 cut(s) | 2296 |
| CciI | TCATGA | 4 cut(s) | 1369, 1543, 1804, 1824 |
| CfoI | GCGC | 2 cut(s) | 178, 1132 |
| Cfr10I | RCCGGY | 1 cut(s) | 1059 |
| Cfr13I | GGNCC | 3 cut(s) | 265, 910, 2146 |
| ClaI | ATCGAT | 1 cut(s) | 2004 |
| CseI | GACGC | 1 cut(s) | 2666 |
| Csp6I | GTAC | 8 cut(s) | 999, 1190, 1446, 1628, 1817, 1997, 2088, 2665 |
| CviQI | GTAC | 8 cut(s) | 999, 1190, 1446, 1628, 1817, 1997, 2088, 2665 |
| DdeI | CTNAG | 8 cut(s) | 152, 1403, 1581, 2049, 2207, 2221, 2517, 2661 |
| DpnI | GATC | 8 cut(s) | 272, 330, 708, 819, 1423, 1515, 1803, 2265 |
| DpnII | GATC | 8 cut(s) | 270, 328, 706, 817, 1421, 1513, 1801, 2263 |
| DraI | TTTAAA | 1 cut(s) | 438 |
| DraIII | CACNNNGTG | 1 cut(s) | 249 |
| Eam1104I | CTCTTC | 2 cut(s) | 405, 2196 |
| EarI | CTCTTC | 2 cut(s) | 405, 2196 |
| EciI | GGCGGA | 1 cut(s) | 307 |
| Eco130I | CCWWGG | 1 cut(s) | 2537 |
| Eco24I | GRGCYC | 2 cut(s) | 132, 1020 |
| Eco47I | GGWCC | 3 cut(s) | 265, 910, 2146 |
| Eco57I | CTGAAG | 3 cut(s) | 827, 1053, 2093 |
| Eco88I | CYCGRG | 2 cut(s) | 125, 199 |
| EcoRI | GAATTC | 2 cut(s) | 801, 876 |
| EcoRII | CCWGG | 1 cut(s) | 297 |
| EcoT14I | CCWWGG | 1 cut(s) | 2537 |
| EcoT22I | ATGCAT | 2 cut(s) | 238, 1461 |
| EcoT38I | GRGCYC | 2 cut(s) | 132, 1020 |
| ErhI | CCWWGG | 1 cut(s) | 2537 |
| Esp3I | CGTCTC | 1 cut(s) | 1245 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 734, 766, 1029, 1061 |
| FaqI | GGGAC | 3 cut(s) | 1499, 2242, 2383 |
| FbaI | TGATCA | 2 cut(s) | 706, 1801 |
| FblI | GTMKAC | 2 cut(s) | 402, 2593 |
| Fnu4HI | GCNGC | 6 cut(s) | 6, 9, 447, 2158, 2276, 2299 |
| FokI | GGATG | 6 cut(s) | 7, 497, 635, 845, 1304, 2098 |
| FriOI | GRGCYC | 2 cut(s) | 132, 1020 |
| Fsp4HI | GCNGC | 6 cut(s) | 6, 9, 447, 2158, 2276, 2299 |
| FspAI | RTGCGCAY | 1 cut(s) | 1131 |
| FspBI | CTAG | 7 cut(s) | 681, 863, 978, 1172, 1316, 1451, 1604 |
| FspI | TGCGCA | 1 cut(s) | 1131 |
| GlaI | GCGC | 2 cut(s) | 177, 1131 |
| GluI | GCNGC | 6 cut(s) | 6, 9, 447, 2158, 2276, 2299 |
| GsuI | CTGGAG | 3 cut(s) | 635, 1661, 2648 |
| HaeII | RGCGCY | 1 cut(s) | 179 |
| HaeIII | GGCC | 1 cut(s) | 1383 |
| HapII | CCGG | 6 cut(s) | 24, 1060, 1517, 2190, 2462, 2654 |
| HgaI | GACGC | 1 cut(s) | 2666 |
| HhaI | GCGC | 2 cut(s) | 178, 1132 |
| Hin6I | GCGC | 2 cut(s) | 176, 1130 |
| HinP1I | GCGC | 2 cut(s) | 176, 1130 |
| HincII | GTYRAC | 6 cut(s) | 403, 672, 1029, 1177, 1566, 1936 |
| HindII | GTYRAC | 6 cut(s) | 403, 672, 1029, 1177, 1566, 1936 |
| HindIII | AAGCTT | 5 cut(s) | 149, 369, 2075, 2354, 2519 |
| HinfI | GANTC | 8 cut(s) | 140, 197, 392, 578, 642, 1502, 1921, 2023 |
| HpaI | GTTAAC | 2 cut(s) | 1177, 1566 |
| HpaII | CCGG | 6 cut(s) | 24, 1060, 1517, 2190, 2462, 2654 |
| HphI | GGTGA | 6 cut(s) | 537, 779, 1652, 1905, 2099, 2713 |
| Hpy99I | CGWCG | 3 cut(s) | 47, 167, 2141 |
| HpyAV | CCTTC | 6 cut(s) | 142, 736, 802, 1586, 1964, 2327 |
| HpyCH4III | ACNGT | 3 cut(s) | 231, 1189, 1814 |
| HpyCH4IV | ACGT | 5 cut(s) | 45, 76, 1238, 1626, 1632 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 610, 1678, 2295, 2353 |
| HpyF3I | CTNAG | 8 cut(s) | 152, 1403, 1581, 2049, 2207, 2221, 2517, 2661 |
| HpySE526I | ACGT | 5 cut(s) | 45, 76, 1238, 1626, 1632 |
| HspAI | GCGC | 2 cut(s) | 176, 1130 |
| Kpn2I | TCCGGA | 4 cut(s) | 23, 2189, 2461, 2653 |
| Ksp22I | TGATCA | 2 cut(s) | 706, 1801 |
| KspAI | GTTAAC | 2 cut(s) | 1177, 1566 |
| Kzo9I | GATC | 8 cut(s) | 270, 328, 706, 817, 1421, 1513, 1801, 2263 |
| LguI | GCTCTTC | 1 cut(s) | 2196 |
| LmnI | GCTCC | 3 cut(s) | 294, 957, 2696 |
| Lsp1109I | GCAGC | 3 cut(s) | 2144, 2262, 2285 |
| LweI | GCATC | 4 cut(s) | 245, 669, 1090, 1446 |
| MaeI | CTAG | 7 cut(s) | 681, 863, 978, 1172, 1316, 1451, 1604 |
| MaeII | ACGT | 5 cut(s) | 45, 76, 1238, 1626, 1632 |
| MaeIII | GTNAC | 5 cut(s) | 990, 1234, 1357, 1429, 2012 |
| MalI | GATC | 8 cut(s) | 272, 330, 708, 819, 1423, 1515, 1803, 2265 |
| MboI | GATC | 8 cut(s) | 270, 328, 706, 817, 1421, 1513, 1801, 2263 |
| MfeI | CAATTG | 1 cut(s) | 2686 |
| MflI | RGATCY | 4 cut(s) | 270, 328, 1421, 1513 |
| MhlI | GDGCHC | 6 cut(s) | 132, 312, 1020, 1886, 2250, 2516 |
| MlyI | GAGTC | 1 cut(s) | 191 |
| MmeI | TCCRAC | 4 cut(s) | 396, 619, 1191, 2124 |
| Mph1103I | ATGCAT | 2 cut(s) | 238, 1461 |
| MroI | TCCGGA | 4 cut(s) | 23, 2189, 2461, 2653 |
| MroXI | GAANNNNTTC | 3 cut(s) | 577, 789, 1551 |
| MslI | CAYNNNNRTG | 3 cut(s) | 79, 1548, 1635 |
| MspA1I | CMGCKG | 1 cut(s) | 613 |
| MspCI | CTTAAG | 2 cut(s) | 350, 2063 |
| MspI | CCGG | 6 cut(s) | 24, 1060, 1517, 2190, 2462, 2654 |
| MspR9I | CCNGG | 2 cut(s) | 299, 1518 |
| MunI | CAATTG | 1 cut(s) | 2686 |
| MvaI | CCWGG | 1 cut(s) | 299 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 610, 1678, 2295, 2353 |
| NciI | CCSGG | 1 cut(s) | 1518 |
| NdeII | GATC | 8 cut(s) | 270, 328, 706, 817, 1421, 1513, 1801, 2263 |
| NlaIV | GGNNCC | 4 cut(s) | 296, 309, 1883, 1975 |
| NmeAIII | GCCGAG | 1 cut(s) | 2635 |
| NmuCI | GTSAC | 2 cut(s) | 1234, 2012 |
| NsbI | TGCGCA | 1 cut(s) | 1131 |
| NsiI | ATGCAT | 2 cut(s) | 238, 1461 |
| NspI | RCATGY | 3 cut(s) | 1005, 1329, 1942 |
| NspV | TTCGAA | 1 cut(s) | 1850 |
| OliI | CACNNNNGTG | 1 cut(s) | 79 |
| PaeR7I | CTCGAG | 2 cut(s) | 125, 199 |
| PagI | TCATGA | 4 cut(s) | 1369, 1543, 1804, 1824 |
| PciI | ACATGT | 2 cut(s) | 1001, 1938 |
| PciSI | GCTCTTC | 1 cut(s) | 2196 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 206 |
| PdmI | GAANNNNTTC | 3 cut(s) | 577, 789, 1551 |
| PfeI | GAWTC | 7 cut(s) | 140, 392, 578, 642, 1502, 1921, 2023 |
| PflFI | GACNNNGTC | 2 cut(s) | 1490, 2603 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 274, 304, 1442 |
| PfoI | TCCNGGA | 1 cut(s) | 1516 |
| PkrI | GCNGC | 6 cut(s) | 7, 10, 448, 2159, 2277, 2300 |
| PleI | GAGTC | 1 cut(s) | 191 |
| PpsI | GAGTC | 1 cut(s) | 191 |
| Ppu21I | YACGTR | 2 cut(s) | 77, 1633 |
| PscI | ACATGT | 2 cut(s) | 1001, 1938 |
| PshBI | ATTAAT | 2 cut(s) | 2259, 2400 |
| Psp6I | CCWGG | 1 cut(s) | 297 |
| PspGI | CCWGG | 1 cut(s) | 297 |
| PspN4I | GGNNCC | 4 cut(s) | 296, 309, 1883, 1975 |
| PspPI | GGNCC | 3 cut(s) | 265, 910, 2146 |
| PspXI | VCTCGAGB | 2 cut(s) | 125, 199 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1800, 1832 |
| PstI | CTGCAG | 2 cut(s) | 2280, 2444 |
| PsuI | RGATCY | 4 cut(s) | 270, 328, 1421, 1513 |
| PsyI | GACNNNGTC | 2 cut(s) | 1490, 2603 |
| PvuII | CAGCTG | 1 cut(s) | 613 |
| RsaI | GTAC | 8 cut(s) | 1000, 1191, 1447, 1629, 1818, 1998, 2089, 2666 |
| RsaNI | GTAC | 8 cut(s) | 999, 1190, 1446, 1628, 1817, 1997, 2088, 2665 |
| RseI | CAYNNNNRTG | 3 cut(s) | 79, 1548, 1635 |
| SalI | GTCGAC | 1 cut(s) | 401 |
| SapI | GCTCTTC | 1 cut(s) | 2196 |
| SatI | GCNGC | 6 cut(s) | 6, 9, 447, 2158, 2276, 2299 |
| Sau3AI | GATC | 8 cut(s) | 270, 328, 706, 817, 1421, 1513, 1801, 2263 |
| Sau96I | GGNCC | 3 cut(s) | 265, 910, 2146 |
| SchI | GAGTC | 1 cut(s) | 191 |
| ScrFI | CCNGG | 2 cut(s) | 299, 1518 |
| SduI | GDGCHC | 6 cut(s) | 132, 312, 1020, 1886, 2250, 2516 |
| SfaNI | GCATC | 4 cut(s) | 245, 669, 1090, 1446 |
| SfcI | CTRYAG | 3 cut(s) | 1945, 2276, 2440 |
| Sfr274I | CTCGAG | 2 cut(s) | 125, 199 |
| SfuI | TTCGAA | 1 cut(s) | 1850 |
| SinI | GGWCC | 3 cut(s) | 265, 910, 2146 |
| SlaI | CTCGAG | 2 cut(s) | 125, 199 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 79, 1548, 1635 |
| SmlI | CTYRAG | 7 cut(s) | 125, 199, 350, 1108, 2063, 2168, 2309 |
| SmoI | CTYRAG | 7 cut(s) | 125, 199, 350, 1108, 2063, 2168, 2309 |
| SsiI | CCGC | 3 cut(s) | 292, 447, 2545 |
| SspI | AATATT | 1 cut(s) | 1085 |
| SspMI | CTAG | 7 cut(s) | 681, 863, 978, 1172, 1316, 1451, 1604 |
| StyD4I | CCNGG | 2 cut(s) | 297, 1516 |
| StyI | CCWWGG | 1 cut(s) | 2537 |
| TaaI | ACNGT | 3 cut(s) | 231, 1189, 1814 |
| TaiI | ACGT | 5 cut(s) | 48, 79, 1241, 1629, 1635 |
| TatI | WGTACW | 4 cut(s) | 1189, 1816, 2087, 2664 |
| TauI | GCSGC | 1 cut(s) | 449 |
| TfiI | GAWTC | 7 cut(s) | 140, 392, 578, 642, 1502, 1921, 2023 |
| TscAI | CASTG | 3 cut(s) | 1817, 2053, 2759 |
| TseFI | GTSAC | 2 cut(s) | 1234, 2012 |
| TseI | GCWGC | 5 cut(s) | 5, 8, 2157, 2275, 2298 |
| Tsp45I | GTSAC | 2 cut(s) | 1234, 2012 |
| TspGWI | ACGGA | 2 cut(s) | 1801, 1805 |
| TspRI | CASTG | 3 cut(s) | 1817, 2053, 2759 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1490, 2603 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 274, 304, 1442 |
| Vha464I | CTTAAG | 2 cut(s) | 350, 2063 |
| VpaK11BI | GGWCC | 3 cut(s) | 265, 910, 2146 |
| VspI | ATTAAT | 2 cut(s) | 2259, 2400 |
| XapI | RAATTY | 3 cut(s) | 801, 876, 1990 |
| XbaI | TCTAGA | 1 cut(s) | 1315 |
| XceI | RCATGY | 3 cut(s) | 1005, 1329, 1942 |
| XhoI | CTCGAG | 2 cut(s) | 125, 199 |
| XmiI | GTMKAC | 2 cut(s) | 402, 2593 |
| XmnI | GAANNNNTTC | 3 cut(s) | 577, 789, 1551 |
| XspI | CTAG | 7 cut(s) | 681, 863, 978, 1172, 1316, 1451, 1604 |
| Zsp2I | ATGCAT | 2 cut(s) | 238, 1461 |