TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 14 - 192 | 1.9e-53 | TIR domain |
| TIR_2 | PF13676 | 17 - 112 | 7.4e-16 | TIR domain |
| NB-ARC | PF00931 | 209 - 361 | 3.4e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 430 - 495 | 3.4e-22 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 700 - 770 | 1.1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 763 - 855 | 2e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 771 - 856 | 5.2e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 837 - 893 | 1.2e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 1053 - 1196 | 1.1e-16 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3518 |
| Acc16I | TGCGCA | 1 cut(s) | 2982 |
| Acc36I | ACCTGC | 1 cut(s) | 2884 |
| AccB1I | GGYRCC | 3 cut(s) | 310, 2713, 3794 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 277 |
| AccBSI | CCGCTC | 1 cut(s) | 1699 |
| AccI | GTMKAC | 2 cut(s) | 1599, 3510 |
| AciI | CCGC | 7 cut(s) | 660, 1382, 1699, 2749, 3430, 3573, 3816 |
| AclWI | GGATC | 7 cut(s) | 326, 532, 2193, 3211, 3959, 3972, 4026 |
| AcoI | YGGCCR | 1 cut(s) | 2729 |
| AcuI | CTGAAG | 6 cut(s) | 374, 1448, 1631, 1632, 1814, 3192 |
| AcvI | CACGTG | 1 cut(s) | 1729 |
| AdeI | CACNNNGTG | 1 cut(s) | 1037 |
| AfaI | GTAC | 8 cut(s) | 1103, 1194, 1703, 2769, 3219, 3331, 3464, 3931 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 277, 953, 1388 |
| AflII | CTTAAG | 3 cut(s) | 2072, 2240, 3676 |
| AflIII | ACRYGT | 5 cut(s) | 77, 1726, 1842, 3420, 3944 |
| AjiI | CACGTC | 1 cut(s) | 3945 |
| AjnI | CCWGG | 2 cut(s) | 2544, 3524 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 918, 950 |
| AleI | CACNNNNGTG | 2 cut(s) | 82, 591 |
| Alw21I | GWGCWC | 6 cut(s) | 723, 1051, 1059, 1417, 2955, 3292 |
| Alw26I | GTCTC | 4 cut(s) | 2084, 3136, 3526, 3793 |
| AlwI | GGATC | 7 cut(s) | 326, 532, 2193, 3211, 3959, 3972, 4026 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3215 |
| Ama87I | CYCGRG | 2 cut(s) | 202, 617 |
| AoxI | GGCC | 3 cut(s) | 2259, 2729, 3442 |
| ApeKI | GCWGC | 7 cut(s) | 5, 8, 465, 2088, 2130, 2428, 3651 |
| AseI | ATTAAT | 2 cut(s) | 3639, 3845 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 580, 789, 2106, 2148, 2448, 3533 |
| AspLEI | GCGC | 3 cut(s) | 2983, 3272, 3357 |
| AspS9I | GGNCC | 3 cut(s) | 268, 2260, 3443 |
| AsuC2I | CCSGG | 3 cut(s) | 618, 619, 3162 |
| AsuHPI | GGTGA | 5 cut(s) | 865, 1049, 3838, 3926, 3947 |
| AvaI | CYCGRG | 2 cut(s) | 202, 617 |
| AvaII | GGWCC | 1 cut(s) | 268 |
| BalI | TGGCCA | 1 cut(s) | 2731 |
| BamHI | GGATCC | 1 cut(s) | 3964 |
| BanI | GGYRCC | 3 cut(s) | 310, 2713, 3794 |
| BanII | GRGCYC | 4 cut(s) | 1026, 1059, 1417, 2955 |
| BbrPI | CACGTG | 1 cut(s) | 1729 |
| BbsI | GAAGAC | 4 cut(s) | 9, 78, 2282, 2492 |
| Bbv12I | GWGCWC | 6 cut(s) | 723, 1051, 1059, 1417, 2955, 3292 |
| BbvI | GCAGC | 5 cut(s) | 452, 2100, 2117, 2415, 3638 |
| BceAI | ACGGC | 4 cut(s) | 1560, 2727, 3009, 3236 |
| BciT130I | CCWGG | 2 cut(s) | 2546, 3526 |
| BciVI | GTATCC | 2 cut(s) | 283, 3959 |
| BclI | TGATCA | 2 cut(s) | 1657, 4002 |
| BcnI | CCSGG | 3 cut(s) | 618, 619, 3162 |
| BcoDI | GTCTC | 4 cut(s) | 2084, 3136, 3526, 3793 |
| BfmI | CTRYAG | 3 cut(s) | 1548, 3553, 3652 |
| BfrI | CTTAAG | 3 cut(s) | 2072, 2240, 3676 |
| BfuAI | ACCTGC | 1 cut(s) | 2884 |
| BfuI | GTATCC | 2 cut(s) | 283, 3959 |
| BglII | AGATCT | 3 cut(s) | 273, 2608, 2908 |
| BisI | GCNGC | 8 cut(s) | 6, 9, 466, 661, 2089, 2131, 2429, 3652 |
| BlpI | GCTNAGC | 1 cut(s) | 495 |
| BlsI | GCNGC | 8 cut(s) | 7, 10, 467, 662, 2090, 2132, 2430, 3653 |
| BmcAI | AGTACT | 1 cut(s) | 3931 |
| Bme1390I | CCNGG | 5 cut(s) | 618, 619, 2546, 3162, 3526 |
| Bme18I | GGWCC | 1 cut(s) | 268 |
| BmeT110I | CYCGRG | 2 cut(s) | 202, 617 |
| BmgBI | CACGTC | 1 cut(s) | 3945 |
| BmgT120I | GGNCC | 3 cut(s) | 268, 2260, 3443 |
| BmiI | GGNNCC | 5 cut(s) | 312, 1879, 2715, 3796, 3966 |
| BmrFI | CCNGG | 5 cut(s) | 618, 619, 2546, 3162, 3526 |
| BpiI | GAAGAC | 4 cut(s) | 9, 78, 2282, 2492 |
| BpmI | CTGGAG | 3 cut(s) | 457, 2068, 3508 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 495 |
| BpuEI | CTTGAG | 6 cut(s) | 1073, 1988, 2119, 2372, 2623, 3428 |
| BpuMI | CCSGG | 3 cut(s) | 618, 619, 3162 |
| Bsa29I | ATCGAT | 1 cut(s) | 3659 |
| BsaAI | YACGTR | 3 cut(s) | 80, 1196, 1729 |
| BsaBI | GATNNNNATC | 3 cut(s) | 542, 1521, 3665 |
| BsaJI | CCNNGG | 3 cut(s) | 617, 618, 3901 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3922, 3952 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 277, 953, 1388 |
| Bse1I | ACTGG | 6 cut(s) | 270, 399, 435, 3283, 3445, 3464 |
| Bse3DI | GCAATG | 2 cut(s) | 678, 2698 |
| Bse8I | GATNNNNATC | 3 cut(s) | 542, 1521, 3665 |
| BseBI | CCWGG | 2 cut(s) | 2546, 3526 |
| BseCI | ATCGAT | 1 cut(s) | 3659 |
| BseDI | CCNNGG | 3 cut(s) | 617, 618, 3901 |
| BseGI | GGATG | 9 cut(s) | 493, 828, 1790, 2011, 2015, 2276, 2702, 2930, 3922 |
| BseJI | GATNNNNATC | 3 cut(s) | 542, 1521, 3665 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 277, 953, 1388 |
| BseMI | GCAATG | 2 cut(s) | 678, 2698 |
| BseMII | CTCAG | 9 cut(s) | 561, 1107, 1422, 1507, 1602, 2139, 2568, 3477, 3904 |
| BseNI | ACTGG | 6 cut(s) | 270, 399, 435, 3283, 3445, 3464 |
| BseRI | GAGGAG | 4 cut(s) | 1112, 2369, 3965, 3968 |
| BseXI | GCAGC | 5 cut(s) | 452, 2100, 2117, 2415, 3638 |
| BsgI | GTGCAG | 3 cut(s) | 2872, 3217, 3727 |
| BshFI | GGCC | 3 cut(s) | 2261, 2731, 3444 |
| BshNI | GGYRCC | 3 cut(s) | 310, 2713, 3794 |
| BshVI | ATCGAT | 1 cut(s) | 3659 |
| BsiHKAI | GWGCWC | 6 cut(s) | 723, 1051, 1059, 1417, 2955, 3292 |
| BsiHKCI | CYCGRG | 2 cut(s) | 202, 617 |
| BsiSI | CCGG | 4 cut(s) | 462, 618, 3162, 3792 |
| BslFI | GGGAC | 4 cut(s) | 600, 1751, 1773, 2215 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 277, 953, 1388 |
| BsmAI | GTCTC | 4 cut(s) | 2084, 3136, 3526, 3793 |
| BsmFI | GGGAC | 4 cut(s) | 600, 1751, 1773, 2215 |
| BsmI | GAATGC | 1 cut(s) | 2091 |
| BsnI | GGCC | 3 cut(s) | 2261, 2731, 3444 |
| BsoBI | CYCGRG | 2 cut(s) | 202, 617 |
| Bsp1286I | GDGCHC | 7 cut(s) | 723, 1026, 1051, 1059, 1417, 2955, 3292 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 495 |
| Bsp19I | CCATGG | 1 cut(s) | 3901 |
| BspACI | CCGC | 7 cut(s) | 660, 1382, 1699, 2749, 3430, 3573, 3816 |
| BspANI | GGCC | 3 cut(s) | 2261, 2731, 3444 |
| BspCNI | CTCAG | 9 cut(s) | 560, 1106, 1423, 1506, 1601, 2138, 2569, 3478, 3903 |
| BspDI | ATCGAT | 1 cut(s) | 3659 |
| BspHI | TCATGA | 4 cut(s) | 1654, 1756, 3537, 3598 |
| BspLI | GGNNCC | 5 cut(s) | 312, 1879, 2715, 3796, 3966 |
| BspMAI | CTGCAG | 1 cut(s) | 3656 |
| BspMI | ACCTGC | 1 cut(s) | 2884 |
| BspPI | GGATC | 7 cut(s) | 326, 532, 2193, 3211, 3959, 3972, 4026 |
| BspQI | GCTCTTC | 2 cut(s) | 144, 3986 |
| BspT107I | GGYRCC | 3 cut(s) | 310, 2713, 3794 |
| BspTI | CTTAAG | 3 cut(s) | 2072, 2240, 3676 |
| BsrBI | CCGCTC | 1 cut(s) | 1699 |
| BsrDI | GCAATG | 2 cut(s) | 678, 2698 |
| BsrI | ACTGG | 6 cut(s) | 270, 399, 435, 3283, 3445, 3464 |
| BssECI | CCNNGG | 3 cut(s) | 617, 618, 3901 |
| BssNAI | GTATAC | 1 cut(s) | 1600 |
| BssT1I | CCWWGG | 1 cut(s) | 3901 |
| Bst1107I | GTATAC | 1 cut(s) | 1600 |
| Bst2UI | CCWGG | 2 cut(s) | 2546, 3526 |
| Bst4CI | ACNGT | 4 cut(s) | 725, 767, 2850, 3217 |
| Bst6I | CTCTTC | 9 cut(s) | 144, 408, 2112, 2322, 2833, 3138, 3162, 3312, 3986 |
| BstAFI | CTTAAG | 3 cut(s) | 2072, 2240, 3676 |
| BstBAI | YACGTR | 3 cut(s) | 80, 1196, 1729 |
| BstC8I | GCNNGC | 4 cut(s) | 2460, 2669, 3623, 3818 |
| BstDSI | CCRYGG | 1 cut(s) | 3901 |
| BstF5I | GGATG | 9 cut(s) | 493, 828, 1790, 2011, 2015, 2276, 2702, 2930, 3922 |
| BstHHI | GCGC | 3 cut(s) | 2983, 3272, 3357 |
| BstMAI | GTCTC | 4 cut(s) | 2084, 3136, 3526, 3793 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 666, 1553, 3269 |
| BstNI | CCWGG | 2 cut(s) | 2546, 3526 |
| BstNSI | RCATGY | 3 cut(s) | 1320, 1846, 3424 |
| BstSCI | CCNGG | 5 cut(s) | 616, 617, 2544, 3160, 3524 |
| BstSFI | CTRYAG | 3 cut(s) | 1548, 3553, 3652 |
| BstV1I | GCAGC | 5 cut(s) | 452, 2100, 2117, 2415, 3638 |
| BstV2I | GAAGAC | 4 cut(s) | 9, 78, 2282, 2492 |
| BstX2I | RGATCY | 8 cut(s) | 273, 331, 2185, 2608, 2908, 3203, 3964, 4031 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1241, 1888, 3234, 3459 |
| BstYI | RGATCY | 8 cut(s) | 273, 331, 2185, 2608, 2908, 3203, 3964, 4031 |
| BstZ17I | GTATAC | 1 cut(s) | 1600 |
| Bsu15I | ATCGAT | 1 cut(s) | 3659 |
| BsuI | GTATCC | 2 cut(s) | 283, 3959 |
| BsuRI | GGCC | 3 cut(s) | 2261, 2731, 3444 |
| BsuTUI | ATCGAT | 1 cut(s) | 3659 |
| BtgI | CCRYGG | 1 cut(s) | 3901 |
| BtrI | CACGTC | 1 cut(s) | 3945 |
| BtsCI | GGATG | 9 cut(s) | 493, 828, 1790, 2011, 2015, 2276, 2702, 2930, 3922 |
| BtsI | GCAGTG | 1 cut(s) | 964 |
| BtsIMutI | CAGTG | 6 cut(s) | 406, 721, 964, 3200, 3290, 3483 |
| BveI | ACCTGC | 1 cut(s) | 2884 |
| Cac8I | GCNNGC | 4 cut(s) | 2460, 2669, 3623, 3818 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3215 |
| CciI | TCATGA | 4 cut(s) | 1654, 1756, 3537, 3598 |
| CfoI | GCGC | 3 cut(s) | 2983, 3272, 3357 |
| Cfr13I | GGNCC | 3 cut(s) | 268, 2260, 3443 |
| Cfr9I | CCCGGG | 1 cut(s) | 617 |
| ClaI | ATCGAT | 1 cut(s) | 3659 |
| CseI | GACGC | 1 cut(s) | 500 |
| Csp6I | GTAC | 8 cut(s) | 1102, 1193, 1702, 2768, 3218, 3330, 3463, 3930 |
| CviQI | GTAC | 8 cut(s) | 1102, 1193, 1702, 2768, 3218, 3330, 3463, 3930 |
| DraI | TTTAAA | 3 cut(s) | 915, 1810, 2595 |
| DraIII | CACNNNGTG | 1 cut(s) | 1037 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3518 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3518 |
| EaeI | YGGCCR | 1 cut(s) | 2729 |
| Eam1104I | CTCTTC | 9 cut(s) | 144, 408, 2112, 2322, 2833, 3138, 3162, 3312, 3986 |
| EarI | CTCTTC | 9 cut(s) | 144, 408, 2112, 2322, 2833, 3138, 3162, 3312, 3986 |
| Ecl136II | GAGCTC | 3 cut(s) | 1057, 1415, 2953 |
| Eco130I | CCWWGG | 1 cut(s) | 3901 |
| Eco24I | GRGCYC | 4 cut(s) | 1026, 1059, 1417, 2955 |
| Eco47I | GGWCC | 1 cut(s) | 268 |
| Eco53kI | GAGCTC | 3 cut(s) | 1057, 1415, 2953 |
| Eco57I | CTGAAG | 6 cut(s) | 374, 1448, 1631, 1632, 1814, 3192 |
| Eco72I | CACGTG | 1 cut(s) | 1729 |
| Eco88I | CYCGRG | 2 cut(s) | 202, 617 |
| EcoICRI | GAGCTC | 3 cut(s) | 1057, 1415, 2953 |
| EcoRI | GAATTC | 2 cut(s) | 1245, 3911 |
| EcoRII | CCWGG | 2 cut(s) | 2544, 3524 |
| EcoT14I | CCWWGG | 1 cut(s) | 3901 |
| EcoT22I | ATGCAT | 4 cut(s) | 241, 1455, 1907, 2276 |
| EcoT38I | GRGCYC | 4 cut(s) | 1026, 1059, 1417, 2955 |
| ErhI | CCWWGG | 1 cut(s) | 3901 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 737, 769, 774, 806, 873, 905, 1286, 1318 |
| FaqI | GGGAC | 4 cut(s) | 600, 1751, 1773, 2215 |
| FauI | CCCGC | 2 cut(s) | 3566, 3809 |
| FauNDI | CATATG | 3 cut(s) | 2097, 2379, 3266 |
| FbaI | TGATCA | 2 cut(s) | 1657, 4002 |
| FblI | GTMKAC | 2 cut(s) | 1599, 3510 |
| Fnu4HI | GCNGC | 8 cut(s) | 6, 9, 466, 661, 2089, 2131, 2429, 3652 |
| FokI | GGATG | 9 cut(s) | 500, 835, 1797, 1998, 2002, 2283, 2709, 2937, 3909 |
| FriOI | GRGCYC | 4 cut(s) | 1026, 1059, 1417, 2955 |
| Fsp4HI | GCNGC | 8 cut(s) | 6, 9, 466, 661, 2089, 2131, 2429, 3652 |
| FspAI | RTGCGCAY | 1 cut(s) | 2982 |
| FspI | TGCGCA | 1 cut(s) | 2982 |
| GlaI | GCGC | 3 cut(s) | 2982, 3271, 3356 |
| GluI | GCNGC | 8 cut(s) | 6, 9, 466, 661, 2089, 2131, 2429, 3652 |
| GsuI | CTGGAG | 3 cut(s) | 457, 2068, 3508 |
| HaeIII | GGCC | 3 cut(s) | 2261, 2731, 3444 |
| HapII | CCGG | 4 cut(s) | 462, 618, 3162, 3792 |
| HgaI | GACGC | 1 cut(s) | 500 |
| HhaI | GCGC | 3 cut(s) | 2983, 3272, 3357 |
| Hin6I | GCGC | 3 cut(s) | 2981, 3270, 3355 |
| HinP1I | GCGC | 3 cut(s) | 2981, 3270, 3355 |
| HincII | GTYRAC | 3 cut(s) | 409, 675, 1533 |
| HindII | GTYRAC | 3 cut(s) | 409, 675, 1533 |
| HindIII | AAGCTT | 6 cut(s) | 372, 497, 1267, 1883, 3020, 3673 |
| HpaI | GTTAAC | 1 cut(s) | 1533 |
| HpaII | CCGG | 4 cut(s) | 462, 618, 3162, 3792 |
| HphI | GGTGA | 5 cut(s) | 865, 1049, 3838, 3926, 3947 |
| Hpy99I | CGWCG | 2 cut(s) | 170, 3946 |
| HpyCH4III | ACNGT | 4 cut(s) | 725, 767, 2850, 3217 |
| HpyCH4IV | ACGT | 6 cut(s) | 79, 844, 1195, 1728, 1896, 3944 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 666, 1553, 3269 |
| HpySE526I | ACGT | 6 cut(s) | 79, 844, 1195, 1728, 1896, 3944 |
| HspAI | GCGC | 3 cut(s) | 2981, 3270, 3355 |
| Ksp22I | TGATCA | 2 cut(s) | 1657, 4002 |
| KspAI | GTTAAC | 1 cut(s) | 1533 |
| LguI | GCTCTTC | 2 cut(s) | 144, 3986 |
| LmnI | GCTCC | 5 cut(s) | 178, 1169, 2176, 2386, 3978 |
| Lsp1109I | GCAGC | 5 cut(s) | 452, 2100, 2117, 2415, 3638 |
| MaeII | ACGT | 6 cut(s) | 79, 844, 1195, 1728, 1896, 3944 |
| MaeIII | GTNAC | 6 cut(s) | 1029, 1853, 2783, 3151, 3211, 3278 |
| MbiI | CCGCTC | 1 cut(s) | 1699 |
| MfeI | CAATTG | 1 cut(s) | 1557 |
| MflI | RGATCY | 8 cut(s) | 273, 331, 2185, 2608, 2908, 3203, 3964, 4031 |
| MhlI | GDGCHC | 7 cut(s) | 723, 1026, 1051, 1059, 1417, 2955, 3292 |
| MlsI | TGGCCA | 1 cut(s) | 2731 |
| MluNI | TGGCCA | 1 cut(s) | 2731 |
| MlyI | GAGTC | 7 cut(s) | 194, 464, 1703, 2086, 2316, 3419, 3528 |
| MmeI | TCCRAC | 6 cut(s) | 399, 553, 622, 1608, 2778, 3965 |
| Mox20I | TGGCCA | 1 cut(s) | 2731 |
| Mph1103I | ATGCAT | 4 cut(s) | 241, 1455, 1907, 2276 |
| MroXI | GAANNNNTTC | 6 cut(s) | 580, 789, 2106, 2148, 2448, 3533 |
| MscI | TGGCCA | 1 cut(s) | 2731 |
| MslI | CAYNNNNRTG | 8 cut(s) | 82, 591, 1448, 2096, 2306, 2686, 3033, 3297 |
| Msp20I | TGGCCA | 1 cut(s) | 2731 |
| MspA1I | CMGCKG | 2 cut(s) | 2047, 3651 |
| MspCI | CTTAAG | 3 cut(s) | 2072, 2240, 3676 |
| MspI | CCGG | 4 cut(s) | 462, 618, 3162, 3792 |
| MspR9I | CCNGG | 5 cut(s) | 618, 619, 2546, 3162, 3526 |
| MunI | CAATTG | 1 cut(s) | 1557 |
| Mva1269I | GAATGC | 1 cut(s) | 2091 |
| MvaI | CCWGG | 2 cut(s) | 2546, 3526 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 666, 1553, 3269 |
| NciI | CCSGG | 3 cut(s) | 618, 619, 3162 |
| NcoI | CCATGG | 1 cut(s) | 3901 |
| NdeI | CATATG | 3 cut(s) | 2097, 2379, 3266 |
| NlaIV | GGNNCC | 5 cut(s) | 312, 1879, 2715, 3796, 3966 |
| NmuCI | GTSAC | 3 cut(s) | 1029, 1853, 2783 |
| NsbI | TGCGCA | 1 cut(s) | 2982 |
| NsiI | ATGCAT | 4 cut(s) | 241, 1455, 1907, 2276 |
| NspI | RCATGY | 3 cut(s) | 1320, 1846, 3424 |
| OliI | CACNNNNGTG | 2 cut(s) | 82, 591 |
| PaeR7I | CTCGAG | 1 cut(s) | 202 |
| PagI | TCATGA | 4 cut(s) | 1654, 1756, 3537, 3598 |
| PciI | ACATGT | 2 cut(s) | 1842, 3420 |
| PciSI | GCTCTTC | 2 cut(s) | 144, 3986 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 209 |
| PctI | GAATGC | 1 cut(s) | 2091 |
| PdmI | GAANNNNTTC | 6 cut(s) | 580, 789, 2106, 2148, 2448, 3533 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 277 |
| PfoI | TCCNGGA | 2 cut(s) | 3160, 3524 |
| PkrI | GCNGC | 8 cut(s) | 7, 10, 467, 662, 2090, 2132, 2430, 3653 |
| PleI | GAGTC | 7 cut(s) | 194, 464, 1703, 2085, 2316, 3418, 3527 |
| PmaCI | CACGTG | 1 cut(s) | 1729 |
| PmlI | CACGTG | 1 cut(s) | 1729 |
| PpsI | GAGTC | 7 cut(s) | 194, 464, 1703, 2085, 2316, 3418, 3527 |
| Ppu21I | YACGTR | 3 cut(s) | 80, 1196, 1729 |
| PscI | ACATGT | 2 cut(s) | 1842, 3420 |
| PshBI | ATTAAT | 2 cut(s) | 3639, 3845 |
| Psp124BI | GAGCTC | 3 cut(s) | 1059, 1417, 2955 |
| Psp6I | CCWGG | 2 cut(s) | 2544, 3524 |
| PspCI | CACGTG | 1 cut(s) | 1729 |
| PspGI | CCWGG | 2 cut(s) | 2544, 3524 |
| PspN4I | GGNNCC | 5 cut(s) | 312, 1879, 2715, 3796, 3966 |
| PspPI | GGNCC | 3 cut(s) | 268, 2260, 3443 |
| PspXI | VCTCGAGB | 1 cut(s) | 202 |
| PstI | CTGCAG | 1 cut(s) | 3656 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3215 |
| PsuI | RGATCY | 8 cut(s) | 273, 331, 2185, 2608, 2908, 3203, 3964, 4031 |
| PvuII | CAGCTG | 2 cut(s) | 2047, 3651 |
| RsaI | GTAC | 8 cut(s) | 1103, 1194, 1703, 2769, 3219, 3331, 3464, 3931 |
| RsaNI | GTAC | 8 cut(s) | 1102, 1193, 1702, 2768, 3218, 3330, 3463, 3930 |
| RseI | CAYNNNNRTG | 8 cut(s) | 82, 591, 1448, 2096, 2306, 2686, 3033, 3297 |
| SacI | GAGCTC | 3 cut(s) | 1059, 1417, 2955 |
| SapI | GCTCTTC | 2 cut(s) | 144, 3986 |
| SatI | GCNGC | 8 cut(s) | 6, 9, 466, 661, 2089, 2131, 2429, 3652 |
| Sau96I | GGNCC | 3 cut(s) | 268, 2260, 3443 |
| ScaI | AGTACT | 1 cut(s) | 3931 |
| SchI | GAGTC | 7 cut(s) | 194, 464, 1703, 2086, 2316, 3419, 3528 |
| ScrFI | CCNGG | 5 cut(s) | 618, 619, 2546, 3162, 3526 |
| SduI | GDGCHC | 7 cut(s) | 723, 1026, 1051, 1059, 1417, 2955, 3292 |
| SfcI | CTRYAG | 3 cut(s) | 1548, 3553, 3652 |
| Sfr274I | CTCGAG | 1 cut(s) | 202 |
| SinI | GGWCC | 1 cut(s) | 268 |
| SlaI | CTCGAG | 1 cut(s) | 202 |
| SmaI | CCCGGG | 1 cut(s) | 619 |
| SmiI | ATTTAAAT | 1 cut(s) | 1810 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 82, 591, 1448, 2096, 2306, 2686, 3033, 3297 |
| SsiI | CCGC | 7 cut(s) | 660, 1382, 1699, 2749, 3430, 3573, 3816 |
| SstI | GAGCTC | 3 cut(s) | 1059, 1417, 2955 |
| StyD4I | CCNGG | 5 cut(s) | 616, 617, 2544, 3160, 3524 |
| StyI | CCWWGG | 1 cut(s) | 3901 |
| SwaI | ATTTAAAT | 1 cut(s) | 1810 |
| TaaI | ACNGT | 4 cut(s) | 725, 767, 2850, 3217 |
| TaiI | ACGT | 6 cut(s) | 82, 847, 1198, 1731, 1899, 3947 |
| TatI | WGTACW | 1 cut(s) | 3929 |
| TauI | GCSGC | 1 cut(s) | 663 |
| TscAI | CASTG | 6 cut(s) | 406, 728, 964, 3200, 3290, 3490 |
| TseFI | GTSAC | 3 cut(s) | 1029, 1853, 2783 |
| TseI | GCWGC | 7 cut(s) | 5, 8, 465, 2088, 2130, 2428, 3651 |
| Tsp45I | GTSAC | 3 cut(s) | 1029, 1853, 2783 |
| TspMI | CCCGGG | 1 cut(s) | 617 |
| TspRI | CASTG | 6 cut(s) | 406, 728, 964, 3200, 3290, 3490 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 277 |
| Vha464I | CTTAAG | 3 cut(s) | 2072, 2240, 3676 |
| VpaK11BI | GGWCC | 1 cut(s) | 268 |
| VspI | ATTAAT | 2 cut(s) | 3639, 3845 |
| XceI | RCATGY | 3 cut(s) | 1320, 1846, 3424 |
| XhoI | CTCGAG | 1 cut(s) | 202 |
| XmaI | CCCGGG | 1 cut(s) | 617 |
| XmiI | GTMKAC | 2 cut(s) | 1599, 3510 |
| XmnI | GAANNNNTTC | 6 cut(s) | 580, 789, 2106, 2148, 2448, 3533 |
| ZrmI | AGTACT | 1 cut(s) | 3931 |
| Zsp2I | ATGCAT | 4 cut(s) | 241, 1455, 1907, 2276 |