TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 14 - 192 | 9.8e-54 | TIR domain |
| TIR_2 | PF13676 | 17 - 112 | 4.1e-16 | TIR domain |
| NB-ARC | PF00931 | 209 - 361 | 1.1e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 430 - 495 | 1.9e-22 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 618 - 746 | 2.3e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 648 - 718 | 1.1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 711 - 824 | 5.7e-13 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 719 - 804 | 2.6e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 310 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 277 |
| AccBSI | CCGCTC | 1 cut(s) | 1699 |
| AccI | GTMKAC | 1 cut(s) | 1599 |
| AciI | CCGC | 4 cut(s) | 346, 660, 1382, 1699 |
| AclWI | GGATC | 3 cut(s) | 326, 532, 2037 |
| AcsI | RAATTY | 8 cut(s) | 645, 1245, 1688, 1753, 1956, 2211, 2288, 2434 |
| AcuI | CTGAAG | 3 cut(s) | 374, 1448, 1631 |
| AdeI | CACNNNGTG | 1 cut(s) | 1037 |
| AfaI | GTAC | 3 cut(s) | 1103, 1194, 2526 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 277, 953, 1388, 1798 |
| AflII | CTTAAG | 2 cut(s) | 1916, 2084 |
| AflIII | ACRYGT | 2 cut(s) | 77, 1009 |
| AjnI | CCWGG | 1 cut(s) | 2388 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 918, 950 |
| AleI | CACNNNNGTG | 2 cut(s) | 82, 591 |
| Alw21I | GWGCWC | 5 cut(s) | 723, 1051, 1059, 1417, 2487 |
| Alw26I | GTCTC | 1 cut(s) | 1928 |
| AlwI | GGATC | 3 cut(s) | 326, 532, 2037 |
| Ama87I | CYCGRG | 2 cut(s) | 202, 617 |
| AoxI | GGCC | 1 cut(s) | 2103 |
| ApeKI | GCWGC | 6 cut(s) | 5, 8, 465, 1932, 1974, 2272 |
| ApoI | RAATTY | 8 cut(s) | 645, 1245, 1688, 1753, 1956, 2211, 2288, 2434 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 580, 789, 1992, 2292 |
| AspLEI | GCGC | 1 cut(s) | 2552 |
| AspS9I | GGNCC | 2 cut(s) | 268, 2104 |
| AsuC2I | CCSGG | 2 cut(s) | 618, 619 |
| AsuHPI | GGTGA | 1 cut(s) | 1049 |
| AvaI | CYCGRG | 2 cut(s) | 202, 617 |
| AvaII | GGWCC | 1 cut(s) | 268 |
| BanI | GGYRCC | 1 cut(s) | 310 |
| BanII | GRGCYC | 3 cut(s) | 1026, 1059, 1417 |
| BbsI | GAAGAC | 4 cut(s) | 9, 78, 2126, 2336 |
| Bbv12I | GWGCWC | 5 cut(s) | 723, 1051, 1059, 1417, 2487 |
| BbvI | GCAGC | 4 cut(s) | 452, 1944, 1961, 2259 |
| BccI | CCATC | 7 cut(s) | 105, 1175, 1268, 1676, 1867, 2036, 2284 |
| BceAI | ACGGC | 1 cut(s) | 1560 |
| BciT130I | CCWGG | 1 cut(s) | 2390 |
| BciVI | GTATCC | 1 cut(s) | 283 |
| BclI | TGATCA | 1 cut(s) | 1657 |
| BcnI | CCSGG | 2 cut(s) | 618, 619 |
| BcoDI | GTCTC | 1 cut(s) | 1928 |
| BfaI | CTAG | 9 cut(s) | 552, 684, 869, 984, 1001, 1044, 1280, 1574, 2039 |
| BfmI | CTRYAG | 1 cut(s) | 1548 |
| BfrI | CTTAAG | 2 cut(s) | 1916, 2084 |
| BfuI | GTATCC | 1 cut(s) | 283 |
| BglII | AGATCT | 2 cut(s) | 273, 2452 |
| BisI | GCNGC | 7 cut(s) | 6, 9, 466, 661, 1933, 1975, 2273 |
| BlpI | GCTNAGC | 1 cut(s) | 495 |
| BlsI | GCNGC | 7 cut(s) | 7, 10, 467, 662, 1934, 1976, 2274 |
| Bme1390I | CCNGG | 3 cut(s) | 618, 619, 2390 |
| Bme18I | GGWCC | 1 cut(s) | 268 |
| BmeT110I | CYCGRG | 2 cut(s) | 202, 617 |
| BmgT120I | GGNCC | 2 cut(s) | 268, 2104 |
| BmiI | GGNNCC | 1 cut(s) | 312 |
| BmrFI | CCNGG | 3 cut(s) | 618, 619, 2390 |
| BpiI | GAAGAC | 4 cut(s) | 9, 78, 2126, 2336 |
| BpmI | CTGGAG | 2 cut(s) | 457, 1912 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 495 |
| BpuEI | CTTGAG | 5 cut(s) | 1073, 1832, 1963, 2216, 2467 |
| BpuMI | CCSGG | 2 cut(s) | 618, 619 |
| BsaAI | YACGTR | 2 cut(s) | 80, 1196 |
| BsaBI | GATNNNNATC | 2 cut(s) | 542, 1521 |
| BsaJI | CCNNGG | 2 cut(s) | 617, 618 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 277, 953, 1388, 1798 |
| Bse1I | ACTGG | 4 cut(s) | 270, 399, 435, 2478 |
| Bse3DI | GCAATG | 1 cut(s) | 678 |
| Bse8I | GATNNNNATC | 2 cut(s) | 542, 1521 |
| BseBI | CCWGG | 1 cut(s) | 2390 |
| BseDI | CCNNGG | 2 cut(s) | 617, 618 |
| BseGI | GGATG | 5 cut(s) | 493, 828, 1855, 1859, 2120 |
| BseJI | GATNNNNATC | 2 cut(s) | 542, 1521 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 277, 953, 1388, 1798 |
| BseMI | GCAATG | 1 cut(s) | 678 |
| BseMII | CTCAG | 5 cut(s) | 561, 1107, 1507, 1602, 2412 |
| BseNI | ACTGG | 4 cut(s) | 270, 399, 435, 2478 |
| BseRI | GAGGAG | 2 cut(s) | 1112, 2213 |
| BseXI | GCAGC | 4 cut(s) | 452, 1944, 1961, 2259 |
| BshFI | GGCC | 1 cut(s) | 2105 |
| BshNI | GGYRCC | 1 cut(s) | 310 |
| BsiHKAI | GWGCWC | 5 cut(s) | 723, 1051, 1059, 1417, 2487 |
| BsiHKCI | CYCGRG | 2 cut(s) | 202, 617 |
| BsiSI | CCGG | 2 cut(s) | 462, 618 |
| BslFI | GGGAC | 2 cut(s) | 600, 2059 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 277, 953, 1388, 1798 |
| BsmAI | GTCTC | 1 cut(s) | 1928 |
| BsmFI | GGGAC | 2 cut(s) | 600, 2059 |
| BsmI | GAATGC | 1 cut(s) | 1935 |
| BsnI | GGCC | 1 cut(s) | 2105 |
| BsoBI | CYCGRG | 2 cut(s) | 202, 617 |
| Bsp1286I | GDGCHC | 6 cut(s) | 723, 1026, 1051, 1059, 1417, 2487 |
| Bsp143I | GATC | 9 cut(s) | 273, 331, 537, 1105, 1522, 1657, 2029, 2173, 2452 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 495 |
| BspACI | CCGC | 4 cut(s) | 346, 660, 1382, 1699 |
| BspANI | GGCC | 1 cut(s) | 2105 |
| BspCNI | CTCAG | 5 cut(s) | 560, 1106, 1506, 1601, 2413 |
| BspHI | TCATGA | 1 cut(s) | 1654 |
| BspLI | GGNNCC | 1 cut(s) | 312 |
| BspPI | GGATC | 3 cut(s) | 326, 532, 2037 |
| BspQI | GCTCTTC | 1 cut(s) | 144 |
| BspT107I | GGYRCC | 1 cut(s) | 310 |
| BspTI | CTTAAG | 2 cut(s) | 1916, 2084 |
| BsrBI | CCGCTC | 1 cut(s) | 1699 |
| BsrDI | GCAATG | 1 cut(s) | 678 |
| BsrI | ACTGG | 4 cut(s) | 270, 399, 435, 2478 |
| BssECI | CCNNGG | 2 cut(s) | 617, 618 |
| BssMI | GATC | 9 cut(s) | 273, 331, 537, 1105, 1522, 1657, 2029, 2173, 2452 |
| BssNAI | GTATAC | 1 cut(s) | 1600 |
| Bst1107I | GTATAC | 1 cut(s) | 1600 |
| Bst2UI | CCWGG | 1 cut(s) | 2390 |
| Bst4CI | ACNGT | 2 cut(s) | 725, 767 |
| Bst6I | CTCTTC | 4 cut(s) | 144, 1956, 2166, 2507 |
| BstAFI | CTTAAG | 2 cut(s) | 1916, 2084 |
| BstBAI | YACGTR | 2 cut(s) | 80, 1196 |
| BstC8I | GCNNGC | 2 cut(s) | 2120, 2304 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1796 |
| BstF5I | GGATG | 5 cut(s) | 493, 828, 1855, 1859, 2120 |
| BstHHI | GCGC | 1 cut(s) | 2552 |
| BstKTI | GATC | 9 cut(s) | 276, 334, 540, 1108, 1525, 1660, 2032, 2176, 2455 |
| BstMAI | GTCTC | 1 cut(s) | 1928 |
| BstMBI | GATC | 9 cut(s) | 273, 331, 537, 1105, 1522, 1657, 2029, 2173, 2452 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 666, 1553 |
| BstNI | CCWGG | 1 cut(s) | 2390 |
| BstNSI | RCATGY | 3 cut(s) | 1013, 1320, 2122 |
| BstSCI | CCNGG | 3 cut(s) | 616, 617, 2388 |
| BstSFI | CTRYAG | 1 cut(s) | 1548 |
| BstV1I | GCAGC | 4 cut(s) | 452, 1944, 1961, 2259 |
| BstV2I | GAAGAC | 4 cut(s) | 9, 78, 2126, 2336 |
| BstX2I | RGATCY | 4 cut(s) | 273, 331, 2029, 2452 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1241 |
| BstYI | RGATCY | 4 cut(s) | 273, 331, 2029, 2452 |
| BstZ17I | GTATAC | 1 cut(s) | 1600 |
| BsuI | GTATCC | 1 cut(s) | 283 |
| BsuRI | GGCC | 1 cut(s) | 2105 |
| BtsCI | GGATG | 5 cut(s) | 493, 828, 1855, 1859, 2120 |
| BtsI | GCAGTG | 1 cut(s) | 964 |
| BtsIMutI | CAGTG | 4 cut(s) | 406, 721, 964, 2485 |
| Cac8I | GCNNGC | 2 cut(s) | 2120, 2304 |
| CciI | TCATGA | 1 cut(s) | 1654 |
| CfoI | GCGC | 1 cut(s) | 2552 |
| Cfr13I | GGNCC | 2 cut(s) | 268, 2104 |
| Cfr9I | CCCGGG | 1 cut(s) | 617 |
| CseI | GACGC | 1 cut(s) | 500 |
| Csp6I | GTAC | 3 cut(s) | 1102, 1193, 2525 |
| CviQI | GTAC | 3 cut(s) | 1102, 1193, 2525 |
| DpnI | GATC | 9 cut(s) | 275, 333, 539, 1107, 1524, 1659, 2031, 2175, 2454 |
| DpnII | GATC | 9 cut(s) | 273, 331, 537, 1105, 1522, 1657, 2029, 2173, 2452 |
| DraI | TTTAAA | 2 cut(s) | 915, 2439 |
| DraIII | CACNNNGTG | 1 cut(s) | 1037 |
| Eam1104I | CTCTTC | 4 cut(s) | 144, 1956, 2166, 2507 |
| EarI | CTCTTC | 4 cut(s) | 144, 1956, 2166, 2507 |
| Ecl136II | GAGCTC | 2 cut(s) | 1057, 1415 |
| Eco24I | GRGCYC | 3 cut(s) | 1026, 1059, 1417 |
| Eco47I | GGWCC | 1 cut(s) | 268 |
| Eco53kI | GAGCTC | 2 cut(s) | 1057, 1415 |
| Eco57I | CTGAAG | 3 cut(s) | 374, 1448, 1631 |
| Eco88I | CYCGRG | 2 cut(s) | 202, 617 |
| EcoICRI | GAGCTC | 2 cut(s) | 1057, 1415 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1796 |
| EcoRI | GAATTC | 1 cut(s) | 1245 |
| EcoRII | CCWGG | 1 cut(s) | 2388 |
| EcoT22I | ATGCAT | 5 cut(s) | 241, 1455, 1751, 2120, 2124 |
| EcoT38I | GRGCYC | 3 cut(s) | 1026, 1059, 1417 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 737, 769, 774, 806, 873, 905, 1286, 1318 |
| FaqI | GGGAC | 2 cut(s) | 600, 2059 |
| FauNDI | CATATG | 2 cut(s) | 1941, 2223 |
| FbaI | TGATCA | 1 cut(s) | 1657 |
| FblI | GTMKAC | 1 cut(s) | 1599 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 9, 466, 661, 1933, 1975, 2273 |
| FokI | GGATG | 5 cut(s) | 500, 835, 1842, 1846, 2127 |
| FriOI | GRGCYC | 3 cut(s) | 1026, 1059, 1417 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 9, 466, 661, 1933, 1975, 2273 |
| FspBI | CTAG | 9 cut(s) | 552, 684, 869, 984, 1001, 1044, 1280, 1574, 2039 |
| GlaI | GCGC | 1 cut(s) | 2551 |
| GluI | GCNGC | 7 cut(s) | 6, 9, 466, 661, 1933, 1975, 2273 |
| GsuI | CTGGAG | 2 cut(s) | 457, 1912 |
| HaeIII | GGCC | 1 cut(s) | 2105 |
| HapII | CCGG | 2 cut(s) | 462, 618 |
| HgaI | GACGC | 1 cut(s) | 500 |
| HhaI | GCGC | 1 cut(s) | 2552 |
| Hin6I | GCGC | 1 cut(s) | 2550 |
| HinP1I | GCGC | 1 cut(s) | 2550 |
| HincII | GTYRAC | 3 cut(s) | 409, 675, 1533 |
| HindII | GTYRAC | 3 cut(s) | 409, 675, 1533 |
| HindIII | AAGCTT | 3 cut(s) | 372, 497, 1267 |
| HpaI | GTTAAC | 1 cut(s) | 1533 |
| HpaII | CCGG | 2 cut(s) | 462, 618 |
| HphI | GGTGA | 1 cut(s) | 1049 |
| Hpy166II | GTNNAC | 8 cut(s) | 409, 675, 907, 1007, 1193, 1391, 1533, 1600 |
| Hpy8I | GTNNAC | 8 cut(s) | 409, 675, 907, 1007, 1193, 1391, 1533, 1600 |
| Hpy99I | CGWCG | 2 cut(s) | 50, 170 |
| HpyCH4III | ACNGT | 2 cut(s) | 725, 767 |
| HpyCH4IV | ACGT | 6 cut(s) | 48, 79, 844, 1195, 1740, 2495 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 666, 1553 |
| HpySE526I | ACGT | 6 cut(s) | 48, 79, 844, 1195, 1740, 2495 |
| HspAI | GCGC | 1 cut(s) | 2550 |
| Ksp22I | TGATCA | 1 cut(s) | 1657 |
| KspAI | GTTAAC | 1 cut(s) | 1533 |
| Kzo9I | GATC | 9 cut(s) | 273, 331, 537, 1105, 1522, 1657, 2029, 2173, 2452 |
| LguI | GCTCTTC | 1 cut(s) | 144 |
| LmnI | GCTCC | 4 cut(s) | 178, 1169, 2020, 2230 |
| Lsp1109I | GCAGC | 4 cut(s) | 452, 1944, 1961, 2259 |
| MaeI | CTAG | 9 cut(s) | 552, 684, 869, 984, 1001, 1044, 1280, 1574, 2039 |
| MaeII | ACGT | 6 cut(s) | 48, 79, 844, 1195, 1740, 2495 |
| MaeIII | GTNAC | 4 cut(s) | 1029, 1760, 2473, 2491 |
| MalI | GATC | 9 cut(s) | 275, 333, 539, 1107, 1524, 1659, 2031, 2175, 2454 |
| MbiI | CCGCTC | 1 cut(s) | 1699 |
| MboI | GATC | 9 cut(s) | 273, 331, 537, 1105, 1522, 1657, 2029, 2173, 2452 |
| MfeI | CAATTG | 1 cut(s) | 1557 |
| MflI | RGATCY | 4 cut(s) | 273, 331, 2029, 2452 |
| MhlI | GDGCHC | 6 cut(s) | 723, 1026, 1051, 1059, 1417, 2487 |
| MlyI | GAGTC | 5 cut(s) | 194, 464, 1703, 1930, 2160 |
| MmeI | TCCRAC | 3 cut(s) | 553, 622, 1608 |
| Mph1103I | ATGCAT | 5 cut(s) | 241, 1455, 1751, 2120, 2124 |
| MroXI | GAANNNNTTC | 4 cut(s) | 580, 789, 1992, 2292 |
| MslI | CAYNNNNRTG | 5 cut(s) | 82, 591, 1448, 1940, 2150 |
| MspA1I | CMGCKG | 1 cut(s) | 1891 |
| MspCI | CTTAAG | 2 cut(s) | 1916, 2084 |
| MspI | CCGG | 2 cut(s) | 462, 618 |
| MspR9I | CCNGG | 3 cut(s) | 618, 619, 2390 |
| MunI | CAATTG | 1 cut(s) | 1557 |
| Mva1269I | GAATGC | 1 cut(s) | 1935 |
| MvaI | CCWGG | 1 cut(s) | 2390 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 666, 1553 |
| NciI | CCSGG | 2 cut(s) | 618, 619 |
| NdeI | CATATG | 2 cut(s) | 1941, 2223 |
| NdeII | GATC | 9 cut(s) | 273, 331, 537, 1105, 1522, 1657, 2029, 2173, 2452 |
| NlaIV | GGNNCC | 1 cut(s) | 312 |
| NmuCI | GTSAC | 2 cut(s) | 1029, 1760 |
| NsiI | ATGCAT | 5 cut(s) | 241, 1455, 1751, 2120, 2124 |
| NspI | RCATGY | 3 cut(s) | 1013, 1320, 2122 |
| OliI | CACNNNNGTG | 2 cut(s) | 82, 591 |
| PaeI | GCATGC | 1 cut(s) | 2122 |
| PaeR7I | CTCGAG | 1 cut(s) | 202 |
| PagI | TCATGA | 1 cut(s) | 1654 |
| PciI | ACATGT | 1 cut(s) | 1009 |
| PciSI | GCTCTTC | 1 cut(s) | 144 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 209 |
| PctI | GAATGC | 1 cut(s) | 1935 |
| PdmI | GAANNNNTTC | 4 cut(s) | 580, 789, 1992, 2292 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 277 |
| PkrI | GCNGC | 7 cut(s) | 7, 10, 467, 662, 1934, 1976, 2274 |
| PleI | GAGTC | 5 cut(s) | 194, 464, 1703, 1929, 2160 |
| PpsI | GAGTC | 5 cut(s) | 194, 464, 1703, 1929, 2160 |
| Ppu21I | YACGTR | 2 cut(s) | 80, 1196 |
| PscI | ACATGT | 1 cut(s) | 1009 |
| Psp124BI | GAGCTC | 2 cut(s) | 1059, 1417 |
| Psp6I | CCWGG | 1 cut(s) | 2388 |
| PspGI | CCWGG | 1 cut(s) | 2388 |
| PspN4I | GGNNCC | 1 cut(s) | 312 |
| PspPI | GGNCC | 2 cut(s) | 268, 2104 |
| PspXI | VCTCGAGB | 1 cut(s) | 202 |
| PsuI | RGATCY | 4 cut(s) | 273, 331, 2029, 2452 |
| PvuII | CAGCTG | 1 cut(s) | 1891 |
| RsaI | GTAC | 3 cut(s) | 1103, 1194, 2526 |
| RsaNI | GTAC | 3 cut(s) | 1102, 1193, 2525 |
| RseI | CAYNNNNRTG | 5 cut(s) | 82, 591, 1448, 1940, 2150 |
| SacI | GAGCTC | 2 cut(s) | 1059, 1417 |
| SapI | GCTCTTC | 1 cut(s) | 144 |
| SatI | GCNGC | 7 cut(s) | 6, 9, 466, 661, 1933, 1975, 2273 |
| Sau3AI | GATC | 9 cut(s) | 273, 331, 537, 1105, 1522, 1657, 2029, 2173, 2452 |
| Sau96I | GGNCC | 2 cut(s) | 268, 2104 |
| SchI | GAGTC | 5 cut(s) | 194, 464, 1703, 1930, 2160 |
| ScrFI | CCNGG | 3 cut(s) | 618, 619, 2390 |
| SduI | GDGCHC | 6 cut(s) | 723, 1026, 1051, 1059, 1417, 2487 |
| SfcI | CTRYAG | 1 cut(s) | 1548 |
| Sfr274I | CTCGAG | 1 cut(s) | 202 |
| SinI | GGWCC | 1 cut(s) | 268 |
| SlaI | CTCGAG | 1 cut(s) | 202 |
| SmaI | CCCGGG | 1 cut(s) | 619 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 82, 591, 1448, 1940, 2150 |
| SmlI | CTYRAG | 8 cut(s) | 202, 1052, 1811, 1916, 1978, 2084, 2195, 2446 |
| SmoI | CTYRAG | 8 cut(s) | 202, 1052, 1811, 1916, 1978, 2084, 2195, 2446 |
| SphI | GCATGC | 1 cut(s) | 2122 |
| SsiI | CCGC | 4 cut(s) | 346, 660, 1382, 1699 |
| SspMI | CTAG | 9 cut(s) | 552, 684, 869, 984, 1001, 1044, 1280, 1574, 2039 |
| SstI | GAGCTC | 2 cut(s) | 1059, 1417 |
| StyD4I | CCNGG | 3 cut(s) | 616, 617, 2388 |
| TaaI | ACNGT | 2 cut(s) | 725, 767 |
| TaiI | ACGT | 6 cut(s) | 51, 82, 847, 1198, 1743, 2498 |
| TaqI | TCGA | 6 cut(s) | 203, 212, 1446, 1477, 2035, 2164 |
| TauI | GCSGC | 1 cut(s) | 663 |
| TscAI | CASTG | 4 cut(s) | 406, 728, 964, 2485 |
| TseFI | GTSAC | 2 cut(s) | 1029, 1760 |
| TseI | GCWGC | 6 cut(s) | 5, 8, 465, 1932, 1974, 2272 |
| Tsp45I | GTSAC | 2 cut(s) | 1029, 1760 |
| TspGWI | ACGGA | 2 cut(s) | 1748, 2555 |
| TspMI | CCCGGG | 1 cut(s) | 617 |
| TspRI | CASTG | 4 cut(s) | 406, 728, 964, 2485 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 277 |
| Vha464I | CTTAAG | 2 cut(s) | 1916, 2084 |
| VpaK11BI | GGWCC | 1 cut(s) | 268 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1796 |
| XapI | RAATTY | 8 cut(s) | 645, 1245, 1688, 1753, 1956, 2211, 2288, 2434 |
| XceI | RCATGY | 3 cut(s) | 1013, 1320, 2122 |
| XhoI | CTCGAG | 1 cut(s) | 202 |
| XmaI | CCCGGG | 1 cut(s) | 617 |
| XmiI | GTMKAC | 1 cut(s) | 1599 |
| XmnI | GAANNNNTTC | 4 cut(s) | 580, 789, 1992, 2292 |
| XspI | CTAG | 9 cut(s) | 552, 684, 869, 984, 1001, 1044, 1280, 1574, 2039 |
| Zsp2I | ATGCAT | 5 cut(s) | 241, 1455, 1751, 2120, 2124 |