MD08G1229600.v1.1

Leucine-rich repeats, outliers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000067
Physical Location & Seq
Reverse (-)
29555012 .. 29559797
4786 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1229600.v1.1.491

Sequence Viewer

Length: 1449 bp
ATGCAATCTCTTAAAACCCTTGATCTTTCTGGCTGCTCGAGTCTTGAGATGTTTCCAGAGATTTTAGCAGTTATGGAACTATCAGAGCTTAATTTATCAAGGTCAAAAATTAAAGAATTGCCCTCGTCAATTAATAATCTCACGGGGTTGAGATATTTGAAACTAAAAGATTGCAAGGAACTCAAGAGCCTTCCAAGCGTCAATCATATGAGATCTCTCGTAACCCTTGATCTTTCTGGCTGCTTGAGTCTTGAGATGTTTCCAGATATTTTAGAAGTTATGGAGGAACTATCAGAGTTTAATTTATCTGGGTCAAAAATTAAAGAACTGCCCTCGTCAATTAATAATCTCACAGGGTTGAGATATTTGAAACTAAAAGATTGCAAGGAACTCAAGAGCCTTCCAAGCATCAATCATATGAGATCTCTCGTAACCCTTGATCTTGCTGGCTACTTGAGTCTTGAGATATTTCCAGATATTTTAGCAGTTATGGAGGAACTATCAGAGCTTAATTTATCCAGGTCAAAAATTAAAGAACTGCCCTCATCAATTAATAATCTCACGGGGTTGAGATATTTGAAACTAAAAGATTGCAAGGAACTTAAGAGCCTTCCAAGCATTTGTATGAAATCTCTCAAAACCCTTGATCTTTCTGGCTGCTCGAGTCTTGAGATGTTTTCAGAGATTTTAGAAATTATGAAGGAACTACCAAAGCTTAATTTATCCAAGTCAAAAATTAAAGAACTGCCCTCATCAATTAATAATCTCAAAGGTTTGAGATATTTGGACCTAAGACATTGCAAGAAACTTAAGAGTCTTCCAAGCATCATTCATATGAGATCTCTCATAACCTTTGATCTTTCTAGCTGCTCGAGTCTTGAGATGTTTCTAGAGATTTCAGCAGTTATGGAGGAACTATCAGAGCTTAATTTATCCAGGTCAAAAATTAAGGAACTGCCATCGTCAATTAATAATCTCACGAAGTTGAAAAGTTTGGACTTAAAAGACTGCAAGGAAATTAAGACTCTTCCAAGTAGCATTTGTCAACTTAAATTCCTATATTGTCTCTCTCTTTCTGGTTGTACAAAATTTGAGGTGTTTCCAAGCATTGAAGAAAATATGGAGGGATTAAAAGTGCTTCATTTGGATGGAACATCTATCAAAGAGCTTCCCCCCTCGATTGAAAGGCTTCAGCGGCTTGTGTTATTAAATCTGAGAAACTGCAAAAGCCTTGTACATCTTCCCGACACTTTATGTAATTTGGCGCAACTTTTAACTCTCGATCTCCGTGAGTGCACAAATCTTTCTCAGTATCCTGTCAACTGTGAGGATTTAGTAAGCTTTTGGGATCGTCTAGTAGATTTTGAAAACGGGCATGCTGACATTTTGACACCTGTACTACTCTCTAAAACATCATCGGCATCCACTACGGAGCTCCGTCTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8

Protein Analysis

483

Amino Acids

54.24

Weight (kDa)

6.69

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 2 - 70 8.3e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 2 - 107 7.7e-09 Leucine-rich repeat region
LRR_13 PF23286 71 - 140 2.4e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_R13L1-DRL21 PF25019 91 - 149 7.4e-06 R13L1/DRL21 LRRs
LRR_14 PF23598 101 - 195 1.6e-08 Leucine-rich repeat region
LRR_13 PF23286 141 - 207 1.9e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 206 - 312 2.9e-09 Leucine-rich repeat region
LRR_13 PF23286 210 - 291 6.1e-11 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 280 - 363 6.9e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 309 - 381 1.7e-12 Leucine-rich repeat region
LRR_13 PF23286 353 - 436 4.3e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 376 - 437 2e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1195
AclWI GGATC 1 cut(s) 1356
AcsI RAATTY 2 cut(s) 1052, 1088
AcuI CTGAAG 1 cut(s) 1175
AfaI GTAC 3 cut(s) 1084, 1236, 1398
AflII CTTAAG 2 cut(s) 602, 809
AgsI TTSAA 7 cut(s) 160, 370, 580, 988, 1112, 1184, 1367
AjnI CCWGG 2 cut(s) 518, 935
AluBI AGCT 8 cut(s) 88, 508, 715, 867, 925, 1168, 1341, 1435
AluI AGCT 8 cut(s) 88, 508, 715, 867, 925, 1168, 1341, 1435
Alw21I GWGCWC 2 cut(s) 1298, 1437
Alw26I GTCTC 1 cut(s) 1070
Alw44I GTGCAC 1 cut(s) 1294
AlwI GGATC 1 cut(s) 1356
Ama87I CYCGRG 3 cut(s) 37, 661, 871
ApaLI GTGCAC 1 cut(s) 1294
ApeKI GCWGC 4 cut(s) 33, 240, 657, 867
ApoI RAATTY 2 cut(s) 1052, 1088
AseI ATTAAT 5 cut(s) 132, 342, 552, 759, 969
Asp700I GAANNNNTTC 1 cut(s) 1188
AspLEI GCGC 1 cut(s) 1267
AspS9I GGNCC 1 cut(s) 787
AvaI CYCGRG 3 cut(s) 37, 661, 871
AvaII GGWCC 1 cut(s) 787
BaeGI GKGCMC 1 cut(s) 1298
BanII GRGCYC 1 cut(s) 1437
BbsI GAAGAC 1 cut(s) 809
Bbv12I GWGCWC 2 cut(s) 1298, 1437
BbvI GCAGC 4 cut(s) 20, 227, 644, 854
BccI CCATC 2 cut(s) 967, 1142
BciT130I CCWGG 2 cut(s) 520, 937
BciVI GTATCC 1 cut(s) 1323
BcoDI GTCTC 1 cut(s) 1070
BfaI CTAG 4 cut(s) 864, 890, 1355, 1447
BfrI CTTAAG 2 cut(s) 602, 809
BfuI GTATCC 1 cut(s) 1323
BglII AGATCT 3 cut(s) 212, 422, 839
BisI GCNGC 5 cut(s) 34, 241, 658, 868, 1196
BlsI GCNGC 5 cut(s) 35, 242, 659, 869, 1197
Bme1390I CCNGG 2 cut(s) 520, 937
Bme18I GGWCC 1 cut(s) 787
BmeT110I CYCGRG 3 cut(s) 37, 661, 871
BmgT120I GGNCC 1 cut(s) 787
BmrFI CCNGG 2 cut(s) 520, 937
BmsI GCATC 3 cut(s) 417, 834, 1430
BpiI GAAGAC 1 cut(s) 809
BpuEI CTTGAG 9 cut(s) 65, 167, 265, 272, 377, 475, 482, 689, 899
Bse3DI GCAATG 1 cut(s) 796
BseBI CCWGG 2 cut(s) 520, 937
BseGI GGATG 2 cut(s) 1153, 1421
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 2 cut(s) 1205, 1322
BseSI GKGCMC 1 cut(s) 1298
BseXI GCAGC 4 cut(s) 20, 227, 644, 854
BsiHKAI GWGCWC 2 cut(s) 1298, 1437
BsiHKCI CYCGRG 3 cut(s) 37, 661, 871
BsmAI GTCTC 1 cut(s) 1070
BsoBI CYCGRG 3 cut(s) 37, 661, 871
Bsp1286I GDGCHC 2 cut(s) 1298, 1437
Bsp1407I TGTACA 2 cut(s) 1082, 1234
BspACI CCGC 1 cut(s) 1195
BspCNI CTCAG 2 cut(s) 1206, 1321
BspPI GGATC 1 cut(s) 1356
BspTI CTTAAG 2 cut(s) 602, 809
BsrDI GCAATG 1 cut(s) 796
BsrGI TGTACA 2 cut(s) 1082, 1234
Bst2UI CCWGG 2 cut(s) 520, 937
Bst4CI ACNGT 1 cut(s) 1325
Bst6I CTCTTC 1 cut(s) 1032
BstAFI CTTAAG 2 cut(s) 602, 809
BstAUI TGTACA 2 cut(s) 1082, 1234
BstC8I GCNNGC 2 cut(s) 448, 1377
BstDEI CTNAG 3 cut(s) 791, 1214, 1308
BstF5I GGATG 2 cut(s) 1153, 1421
BstHHI GCGC 1 cut(s) 1267
BstMAI GTCTC 1 cut(s) 1070
BstMWI GCNNNNNNNGC 4 cut(s) 195, 405, 615, 1195
BstNI CCWGG 2 cut(s) 520, 937
BstNSI RCATGY 1 cut(s) 1379
BstSCI CCNGG 2 cut(s) 518, 935
BstSLI GKGCMC 1 cut(s) 1298
BstV1I GCAGC 4 cut(s) 20, 227, 644, 854
BstV2I GAAGAC 1 cut(s) 809
BstX2I RGATCY 3 cut(s) 212, 422, 839
BstYI RGATCY 3 cut(s) 212, 422, 839
BsuI GTATCC 1 cut(s) 1323
BtsCI GGATG 2 cut(s) 1153, 1421
Cac8I GCNNGC 2 cut(s) 448, 1377
CfoI GCGC 1 cut(s) 1267
Cfr13I GGNCC 1 cut(s) 787
CseI GACGC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 1083, 1235, 1397
CviAII CATG 1 cut(s) 1376
CviQI GTAC 3 cut(s) 1083, 1235, 1397
DdeI CTNAG 3 cut(s) 791, 1214, 1308
Eam1104I CTCTTC 1 cut(s) 1032
EarI CTCTTC 1 cut(s) 1032
Ecl136II GAGCTC 1 cut(s) 1435
Eco24I GRGCYC 1 cut(s) 1437
Eco47I GGWCC 1 cut(s) 787
Eco53kI GAGCTC 1 cut(s) 1435
Eco57I CTGAAG 1 cut(s) 1175
Eco88I CYCGRG 3 cut(s) 37, 661, 871
EcoICRI GAGCTC 1 cut(s) 1435
EcoRII CCWGG 2 cut(s) 518, 935
EcoT38I GRGCYC 1 cut(s) 1437
FaeI CATG 1 cut(s) 1379
FatI CATG 1 cut(s) 1375
FauNDI CATATG 3 cut(s) 207, 417, 834
Fnu4HI GCNGC 5 cut(s) 34, 241, 658, 868, 1196
FokI GGATG 2 cut(s) 1160, 1408
FriOI GRGCYC 1 cut(s) 1437
Fsp4HI GCNGC 5 cut(s) 34, 241, 658, 868, 1196
FspBI CTAG 4 cut(s) 864, 890, 1355, 1447
GlaI GCGC 1 cut(s) 1266
GluI GCNGC 5 cut(s) 34, 241, 658, 868, 1196
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 1267
Hin1II CATG 1 cut(s) 1379
Hin6I GCGC 1 cut(s) 1265
HinP1I GCGC 1 cut(s) 1265
HincII GTYRAC 2 cut(s) 1046, 1321
HindII GTYRAC 2 cut(s) 1046, 1321
HindIII AAGCTT 2 cut(s) 713, 1339
HinfI GANTC 7 cut(s) 40, 247, 457, 664, 814, 874, 1024
Hpy166II GTNNAC 3 cut(s) 1046, 1296, 1321
Hpy188I TCNGA 6 cut(s) 85, 295, 505, 682, 922, 1215
Hpy8I GTNNAC 3 cut(s) 1046, 1296, 1321
HpyAV CCTTC 4 cut(s) 200, 410, 620, 694
HpyCH4III ACNGT 1 cut(s) 1325
HpyCH4V TGCA 8 cut(s) 4, 174, 384, 594, 801, 1011, 1224, 1296
HpyF10VI GCNNNNNNNGC 4 cut(s) 195, 405, 615, 1195
HpyF3I CTNAG 3 cut(s) 791, 1214, 1308
Hsp92II CATG 1 cut(s) 1379
HspAI GCGC 1 cut(s) 1265
LmnI GCTCC 2 cut(s) 1432, 1440
Lsp1109I GCAGC 4 cut(s) 20, 227, 644, 854
LweI GCATC 3 cut(s) 417, 834, 1430
MaeI CTAG 4 cut(s) 864, 890, 1355, 1447
MaeIII GTNAC 2 cut(s) 220, 430
MboII GAAGA 4 cut(s) 809, 1019, 1124, 1232
MflI RGATCY 3 cut(s) 212, 422, 839
MhlI GDGCHC 2 cut(s) 1298, 1437
MlyI GAGTC 7 cut(s) 49, 256, 466, 673, 823, 883, 1018
MroXI GAANNNNTTC 1 cut(s) 1188
MslI CAYNNNNRTG 3 cut(s) 623, 833, 1146
MspA1I CMGCKG 1 cut(s) 1195
MspCI CTTAAG 2 cut(s) 602, 809
MspR9I CCNGG 2 cut(s) 520, 937
MvaI CCWGG 2 cut(s) 520, 937
MwoI GCNNNNNNNGC 4 cut(s) 195, 405, 615, 1195
NdeI CATATG 3 cut(s) 207, 417, 834
NlaIII CATG 1 cut(s) 1379
NspI RCATGY 1 cut(s) 1379
PaeI GCATGC 1 cut(s) 1379
PaeR7I CTCGAG 3 cut(s) 37, 661, 871
PdmI GAANNNNTTC 1 cut(s) 1188
PkrI GCNGC 5 cut(s) 35, 242, 659, 869, 1197
PleI GAGTC 7 cut(s) 48, 255, 465, 672, 822, 882, 1018
PpsI GAGTC 7 cut(s) 48, 255, 465, 672, 822, 882, 1018
PshBI ATTAAT 5 cut(s) 132, 342, 552, 759, 969
Psp124BI GAGCTC 1 cut(s) 1437
Psp6I CCWGG 2 cut(s) 518, 935
PspGI CCWGG 2 cut(s) 518, 935
PspPI GGNCC 1 cut(s) 787
PspXI VCTCGAGB 3 cut(s) 37, 661, 871
PsuI RGATCY 3 cut(s) 212, 422, 839
RsaI GTAC 3 cut(s) 1084, 1236, 1398
RsaNI GTAC 3 cut(s) 1083, 1235, 1397
RseI CAYNNNNRTG 3 cut(s) 623, 833, 1146
SacI GAGCTC 1 cut(s) 1437
SatI GCNGC 5 cut(s) 34, 241, 658, 868, 1196
Sau96I GGNCC 1 cut(s) 787
SchI GAGTC 7 cut(s) 49, 256, 466, 673, 823, 883, 1018
ScrFI CCNGG 2 cut(s) 520, 937
SduI GDGCHC 2 cut(s) 1298, 1437
SfaNI GCATC 3 cut(s) 417, 834, 1430
Sfr274I CTCGAG 3 cut(s) 37, 661, 871
SinI GGWCC 1 cut(s) 787
SlaI CTCGAG 3 cut(s) 37, 661, 871
SmiMI CAYNNNNRTG 3 cut(s) 623, 833, 1146
SphI GCATGC 1 cut(s) 1379
SsiI CCGC 1 cut(s) 1195
SspMI CTAG 4 cut(s) 864, 890, 1355, 1447
SstI GAGCTC 1 cut(s) 1437
StyD4I CCNGG 2 cut(s) 518, 935
TaaI ACNGT 1 cut(s) 1325
TaqI TCGA 5 cut(s) 38, 662, 872, 1178, 1281
TatI WGTACW 3 cut(s) 1082, 1234, 1396
TauI GCSGC 1 cut(s) 1198
TseI GCWGC 4 cut(s) 33, 240, 657, 867
TspDTI ATGAA 4 cut(s) 641, 713, 821, 1130
TspGWI ACGGA 3 cut(s) 1277, 1427, 1445
Vha464I CTTAAG 2 cut(s) 602, 809
VneI GTGCAC 1 cut(s) 1294
VpaK11BI GGWCC 1 cut(s) 787
VspI ATTAAT 5 cut(s) 132, 342, 552, 759, 969
XapI RAATTY 2 cut(s) 1052, 1088
XbaI TCTAGA 1 cut(s) 889
XceI RCATGY 1 cut(s) 1379
XhoI CTCGAG 3 cut(s) 37, 661, 871
XmnI GAANNNNTTC 1 cut(s) 1188
XspI CTAG 4 cut(s) 864, 890, 1355, 1447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.