MD08G1230200.v1.1

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000067
Physical Location & Seq
Reverse (-)
29574980 .. 29577890
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1230200.v1.1.491

Sequence Viewer

Length: 2031 bp
ATGGAAGAGGTTCAGAGCTGGAGATCCGCTCTTACAATTGCCACCAGTTTATCTGGCTGGGATTCGCGAAACTATGAGGAGGATGCAAAGCTTATTGAGGAAATTGTGGAAGATGTTTTGAGAAAATTGAGGCACATCTCATCAACACCATGCAAAGATAATGACTTGGTTGAAATGGATTCTCATATTCATGAAATGCATTTACGATTACATCCTGATCCTCCTGGGGTGGAGTTGGATGATGTTCGCATTGTAGGAATATGGGGTATGGGTGGTTTAGGCAAAACAACCATCGCTAGAGCTGTTTACAACAAAACCGCTTGTCAATTTGAAGCATGTTGTTTTCTTGAAAATGTCAAGGAGGGTTTCATGAAGCATGGCGAACTACATATGCAGACACAACTTCTATCTAGTATCTCGGGCAACAAGGTGGGGAGTTCCGACATATCGAAAAATGGTTTCCAGGTGATGTTAAAAAACCTTGGTCACAAAAAACTTCTTCTTGTTGTTGATGATGTTGACAAATTAGCTCAAATTGAAGCCTTACTCGGAAAGGAACATTCTTTTGGTGGGGGAAGTAGAATCATTATAACAACTAGAGATGTGCAATTACTAAGCGGAGCTAATGCAATATATAGCCCCAAGGTTTTCAATGATGCTGGAGCTCTAGAACTCTTTAGGCGGTACGCCTTCAGAACAAAGCAATCCACCAAAGATTATGATAATCTTTCGAGGCGTGTCATACAATATGCTCAGGGTCTGCCTTTAGCACTCAAAGTTTTGGGAGCTTTTCTTGATAACAAAACTATACGCGAGTGGAAAGATGTGTTAGAAAAAATAAGGAAAATCCCACAAAGGGAAATTCATGATGTGCTTAAAACAAGCTACGATGGACTAGATGACACAGAGAAGGACATCTTTCTAGATATTGCATGTTTCTTTAAAGGAATGCAAAAAAACTATGCAATTGAAATTATGGATGGTTGTGGTTTCTATCCTCATAGTGGTATAAGAGTTCTAATTGATCGAGCTCTCATAACTGTCTCATGGAGGGGGGAACTGGAGATGCATGATTCACTACAGGAAATGGGTCGGGAAATAGTTCGCCAAGAATCTATCAAAGAGCCAGGGAGACGAAGCAGGTTGTGGAGTTATGGAGATGTTCATCATGTGCTAACTCAAAATACGGGTACAGAAGCAGTTGAAAGCATAATCCTGGATTTGTCGATCTCAGATGAGGTATGCCTAAATGCTGAAGCTTTTGATAGTATGAATCAACTAAGACTTCTCAGGATAAGTCATTCTTACGACAAACAACACCTGATTGGGCGCTTAAAGTTTCTTTCTCGTGAGTTGAGGTGTCTCTACTGGCATGGATCCCCCCTTAAATCTTTGCCATCCAACTTTCAATTCAAAAATCTTGTTGACCTTGACATGCAATATAGTCGCATTGAACGACTTTGGGAAGGAACGCAGACGCTGGGGAAGTTGAAATTCATCAATTTAAGCTATTGTGAATACCTTAAGGAAACCCCTGACTTCACAAAGGTGCCAAATCTTGAGAGGCTAATTTTTGTAGGTTGTATAAGTTTGGTTGAGGTTCACCCATCTATTTCGACTCTTACAAACCTTGTTTTATTGGATCTGAGGGGCTGCAACGAACTTATGATTCTAGCCAACAGCATTCGTATGAAATATCTCAAAATCCTTGATCTTTCTGGCTGCTCGAGTCTTGAACTGTTTCCAGAGATTTTAGAAGTTATGGAGGAACTACTAGTGCTTAATTTATTCGGGTCAAAAATTAAAGAACTGCCCTCGTCAATTAATAATCTCACGGGGTTGAGAGATTTGAAACTAACAAATTGCAAGGAACTCAAAAGCCTTTCAAGCATTCGTATGAAATCTCTCGTAACCCTTGATCTTTCTGGCTGCTCAAGTCTTACAAACCTTGTTTTATTGGATCTGCATGGGTCCAGCAAACTTAAAGAGTCTTTCAAGCAGCATTCGTATGAAATCTCTCAAAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

677

Amino Acids

76.79

Weight (kDa)

6.31

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 58 5.5e-06 TIR domain
NB-ARC PF00931 79 - 234 7.3e-16 NB-ARC domain
WHD_ROQ1 PF23282 302 - 372 1.7e-21 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 473 - 492 2.8e-07 Leucine Rich Repeat
LRR_14 PF23598 533 - 649 4.5e-06 Leucine-rich repeat region
LRR_13 PF23286 566 - 649 2.2e-11 Disease resistance protein RPS4B-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
Acc36I ACCTGC 1 cut(s) 1131
AccB1I GGYRCC 1 cut(s) 1549
AccBSI CCGCTC 1 cut(s) 29
AccII CGCG 2 cut(s) 67, 813
AciI CCGC 4 cut(s) 27, 318, 618, 682
AclWI GGATC 6 cut(s) 18, 212, 1371, 1384, 1650, 1968
AcsI RAATTY 2 cut(s) 861, 1493
AcuI CTGAAG 2 cut(s) 676, 1275
AfaI GTAC 2 cut(s) 686, 1192
AfiI CCNNNNNNNGG 2 cut(s) 856, 1004
AflII CTTAAG 1 cut(s) 1523
AhlI ACTAGT 1 cut(s) 1774
AjnI CCWGG 4 cut(s) 223, 462, 1126, 1215
AjuI GAANNNNNNNTTGG 4 cut(s) 549, 581, 1394, 1426
AleI CACNNNNGTG 1 cut(s) 1547
Alw21I GWGCWC 2 cut(s) 667, 1033
Alw26I GTCTC 3 cut(s) 1048, 1126, 1367
AlwI GGATC 6 cut(s) 18, 212, 1371, 1384, 1650, 1968
AlwNI CAGNNNCTG 2 cut(s) 760, 1480
Ama87I CYCGRG 2 cut(s) 418, 1726
ApeKI GCWGC 4 cut(s) 1653, 1722, 1929, 1999
ApoI RAATTY 2 cut(s) 861, 1493
AseI ATTAAT 1 cut(s) 1824
Asp700I GAANNNNTTC 3 cut(s) 9, 1101, 1740
AspLEI GCGC 1 cut(s) 1332
AspS9I GGNCC 1 cut(s) 1971
AsuHPI GGTGA 2 cut(s) 478, 1595
AvaI CYCGRG 2 cut(s) 418, 1726
AvaII GGWCC 1 cut(s) 1971
BamHI GGATCC 1 cut(s) 1376
BanI GGYRCC 1 cut(s) 1549
BanII GRGCYC 2 cut(s) 667, 1033
BauI CACGAG 1 cut(s) 1347
Bbv12I GWGCWC 2 cut(s) 667, 1033
BbvI GCAGC 4 cut(s) 1640, 1709, 1916, 2011
BccI CCATC 5 cut(s) 299, 884, 974, 1405, 1615
BcgI CGANNNNNNTGC 2 cut(s) 1427, 1461
BciT130I CCWGG 4 cut(s) 225, 464, 1128, 1217
BcoDI GTCTC 3 cut(s) 1048, 1126, 1367
BcuI ACTAGT 1 cut(s) 1774
BfaI CTAG 8 cut(s) 297, 411, 597, 668, 896, 923, 1673, 1775
BfmI CTRYAG 1 cut(s) 1079
BfoI RGCGCY 1 cut(s) 1333
BfrI CTTAAG 1 cut(s) 1523
BfuAI ACCTGC 1 cut(s) 1131
BisI GCNGC 4 cut(s) 1654, 1723, 1930, 2000
BlsI GCNGC 4 cut(s) 1655, 1724, 1931, 2001
Bme1390I CCNGG 4 cut(s) 225, 464, 1128, 1217
Bme18I GGWCC 1 cut(s) 1971
BmeT110I CYCGRG 2 cut(s) 418, 1726
BmgT120I GGNCC 1 cut(s) 1971
BmiI GGNNCC 3 cut(s) 1378, 1551, 1972
BmrFI CCNGG 4 cut(s) 225, 464, 1128, 1217
BmsI GCATC 3 cut(s) 73, 646, 1056
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpmI CTGGAG 3 cut(s) 40, 681, 1082
Bpu10I CCTNAGC 1 cut(s) 753
BpuEI CTTGAG 2 cut(s) 1580, 1918
BsaBI GATNNNNATC 1 cut(s) 1164
BsaJI CCNNGG 4 cut(s) 224, 481, 642, 1127
Bsc4I CCNNNNNNNGG 2 cut(s) 856, 1004
Bse1I ACTGG 3 cut(s) 45, 1065, 1373
Bse8I GATNNNNATC 1 cut(s) 1164
BseBI CCWGG 4 cut(s) 225, 464, 1128, 1217
BseDI CCNNGG 4 cut(s) 224, 481, 642, 1127
BseGI GGATG 5 cut(s) 88, 211, 244, 985, 1397
BseJI GATNNNNATC 1 cut(s) 1164
BseLI CCNNNNNNNGG 2 cut(s) 856, 1004
BseMII CTCAG 4 cut(s) 767, 1245, 1303, 1637
BseNI ACTGG 3 cut(s) 45, 1065, 1373
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 4 cut(s) 1640, 1709, 1916, 2011
BseYI CCCAGC 2 cut(s) 57, 1480
Bsh1236I CGCG 2 cut(s) 67, 813
BshNI GGYRCC 1 cut(s) 1549
BsiHKAI GWGCWC 2 cut(s) 667, 1033
BsiHKCI CYCGRG 2 cut(s) 418, 1726
BslI CCNNNNNNNGG 2 cut(s) 856, 1004
BsmAI GTCTC 3 cut(s) 1048, 1126, 1367
BsmBI CGTCTC 1 cut(s) 1126
BsmI GAATGC 4 cut(s) 954, 1683, 1890, 2002
BsoBI CYCGRG 2 cut(s) 418, 1726
Bsp1286I GDGCHC 2 cut(s) 667, 1033
Bsp143I GATC 9 cut(s) 23, 217, 1024, 1227, 1376, 1642, 1711, 1918, 1960
Bsp68I TCGCGA 1 cut(s) 67
BspACI CCGC 4 cut(s) 27, 318, 618, 682
BspCNI CTCAG 4 cut(s) 766, 1244, 1302, 1638
BspFNI CGCG 2 cut(s) 67, 813
BspHI TCATGA 3 cut(s) 190, 369, 865
BspLI GGNNCC 3 cut(s) 1378, 1551, 1972
BspMI ACCTGC 1 cut(s) 1131
BspPI GGATC 6 cut(s) 18, 212, 1371, 1384, 1650, 1968
BspT107I GGYRCC 1 cut(s) 1549
BspTI CTTAAG 1 cut(s) 1523
BsrBI CCGCTC 1 cut(s) 29
BsrI ACTGG 3 cut(s) 45, 1065, 1373
BssECI CCNNGG 4 cut(s) 224, 481, 642, 1127
BssMI GATC 9 cut(s) 23, 217, 1024, 1227, 1376, 1642, 1711, 1918, 1960
BssSI CACGAG 1 cut(s) 1347
BssT1I CCWWGG 2 cut(s) 481, 642
Bst2BI CACGAG 1 cut(s) 1347
Bst2UI CCWGG 4 cut(s) 225, 464, 1128, 1217
Bst4CI ACNGT 2 cut(s) 1042, 1740
BstAFI CTTAAG 1 cut(s) 1523
BstDEI CTNAG 6 cut(s) 614, 753, 1231, 1280, 1289, 1646
BstF5I GGATG 5 cut(s) 88, 211, 244, 985, 1397
BstFNI CGCG 2 cut(s) 67, 813
BstH2I RGCGCY 1 cut(s) 1333
BstHHI GCGC 1 cut(s) 1332
BstKTI GATC 9 cut(s) 26, 220, 1027, 1230, 1379, 1645, 1714, 1921, 1963
BstMAI GTCTC 3 cut(s) 1048, 1126, 1367
BstMBI GATC 9 cut(s) 23, 217, 1024, 1227, 1376, 1642, 1711, 1918, 1960
BstMWI GCNNNNNNNGC 1 cut(s) 1887
BstNI CCWGG 4 cut(s) 225, 464, 1128, 1217
BstNSI RCATGY 3 cut(s) 339, 936, 1438
BstSCI CCNGG 4 cut(s) 223, 462, 1126, 1215
BstSFI CTRYAG 1 cut(s) 1079
BstUI CGCG 2 cut(s) 67, 813
BstV1I GCAGC 4 cut(s) 1640, 1709, 1916, 2011
BstX2I RGATCY 4 cut(s) 23, 1376, 1642, 1960
BstYI RGATCY 4 cut(s) 23, 1376, 1642, 1960
BtgZI GCGATG 1 cut(s) 277
BtsCI GGATG 5 cut(s) 88, 211, 244, 985, 1397
BtuMI TCGCGA 1 cut(s) 67
BveI ACCTGC 1 cut(s) 1131
CaiI CAGNNNCTG 2 cut(s) 760, 1480
CciI TCATGA 3 cut(s) 190, 369, 865
CfoI GCGC 1 cut(s) 1332
Cfr13I GGNCC 1 cut(s) 1971
CseI GACGC 1 cut(s) 1486
Csp6I GTAC 2 cut(s) 685, 1191
CviQI GTAC 2 cut(s) 685, 1191
DdeI CTNAG 6 cut(s) 614, 753, 1231, 1280, 1289, 1646
DpnI GATC 9 cut(s) 25, 219, 1026, 1229, 1378, 1644, 1713, 1920, 1962
DpnII GATC 9 cut(s) 23, 217, 1024, 1227, 1376, 1642, 1711, 1918, 1960
DraI TTTAAA 1 cut(s) 943
Ecl136II GAGCTC 2 cut(s) 665, 1031
Eco130I CCWWGG 2 cut(s) 481, 642
Eco24I GRGCYC 2 cut(s) 667, 1033
Eco47I GGWCC 1 cut(s) 1971
Eco53kI GAGCTC 2 cut(s) 665, 1031
Eco57I CTGAAG 2 cut(s) 676, 1275
Eco88I CYCGRG 2 cut(s) 418, 1726
EcoICRI GAGCTC 2 cut(s) 665, 1031
EcoRII CCWGG 4 cut(s) 223, 462, 1126, 1215
EcoT14I CCWWGG 2 cut(s) 481, 642
EcoT22I ATGCAT 2 cut(s) 201, 1071
EcoT38I GRGCYC 2 cut(s) 667, 1033
ErhI CCWWGG 2 cut(s) 481, 642
Esp3I CGTCTC 1 cut(s) 1126
FalI AAGNNNNNCTT 4 cut(s) 902, 934, 1288, 1320
FauNDI CATATG 1 cut(s) 390
Fnu4HI GCNGC 4 cut(s) 1654, 1723, 1930, 2000
FokI GGATG 5 cut(s) 95, 198, 251, 992, 1384
FriOI GRGCYC 2 cut(s) 667, 1033
Fsp4HI GCNGC 4 cut(s) 1654, 1723, 1930, 2000
FspBI CTAG 8 cut(s) 297, 411, 597, 668, 896, 923, 1673, 1775
GlaI GCGC 1 cut(s) 1331
GluI GCNGC 4 cut(s) 1654, 1723, 1930, 2000
GsaI CCCAGC 2 cut(s) 61, 1484
GsuI CTGGAG 3 cut(s) 40, 681, 1082
HaeII RGCGCY 1 cut(s) 1333
HgaI GACGC 1 cut(s) 1486
HhaI GCGC 1 cut(s) 1332
Hin6I GCGC 1 cut(s) 1330
HinP1I GCGC 1 cut(s) 1330
HincII GTYRAC 2 cut(s) 520, 1426
HindII GTYRAC 2 cut(s) 520, 1426
HindIII AAGCTT 2 cut(s) 89, 1257
HphI GGTGA 2 cut(s) 478, 1595
Hpy166II GTNNAC 4 cut(s) 307, 520, 1426, 1603
Hpy188I TCNGA 6 cut(s) 15, 442, 551, 695, 1234, 1647
Hpy8I GTNNAC 4 cut(s) 307, 520, 1426, 1603
HpyAV CCTTC 3 cut(s) 700, 904, 1460
HpyCH4III ACNGT 2 cut(s) 1042, 1740
HpyF10VI GCNNNNNNNGC 1 cut(s) 1887
HpyF3I CTNAG 6 cut(s) 614, 753, 1231, 1280, 1289, 1646
HspAI GCGC 1 cut(s) 1330
Kzo9I GATC 9 cut(s) 23, 217, 1024, 1227, 1376, 1642, 1711, 1918, 1960
LmnI GCTCC 3 cut(s) 620, 662, 785
Lsp1109I GCAGC 4 cut(s) 1640, 1709, 1916, 2011
LweI GCATC 3 cut(s) 73, 646, 1056
MaeI CTAG 8 cut(s) 297, 411, 597, 668, 896, 923, 1673, 1775
MaeIII GTNAC 2 cut(s) 485, 1909
MalI GATC 9 cut(s) 25, 219, 1026, 1229, 1378, 1644, 1713, 1920, 1962
MbiI CCGCTC 1 cut(s) 29
MboI GATC 9 cut(s) 23, 217, 1024, 1227, 1376, 1642, 1711, 1918, 1960
MboII GAAGA 3 cut(s) 17, 122, 491
MfeI CAATTG 2 cut(s) 36, 966
MflI RGATCY 4 cut(s) 23, 1376, 1642, 1960
MhlI GDGCHC 2 cut(s) 667, 1033
MlyI GAGTC 3 cut(s) 1612, 1738, 1997
MmeI TCCRAC 3 cut(s) 216, 465, 1425
Mph1103I ATGCAT 2 cut(s) 201, 1071
MroXI GAANNNNTTC 3 cut(s) 9, 1101, 1740
MslI CAYNNNNRTG 5 cut(s) 189, 1547, 1688, 1895, 2007
MspCI CTTAAG 1 cut(s) 1523
MspR9I CCNGG 4 cut(s) 225, 464, 1128, 1217
MunI CAATTG 2 cut(s) 36, 966
Mva1269I GAATGC 4 cut(s) 954, 1683, 1890, 2002
MvaI CCWGG 4 cut(s) 225, 464, 1128, 1217
MvnI CGCG 2 cut(s) 67, 813
MwoI GCNNNNNNNGC 1 cut(s) 1887
NdeI CATATG 1 cut(s) 390
NdeII GATC 9 cut(s) 23, 217, 1024, 1227, 1376, 1642, 1711, 1918, 1960
NlaIV GGNNCC 3 cut(s) 1378, 1551, 1972
NmuCI GTSAC 1 cut(s) 485
NruI TCGCGA 1 cut(s) 67
NsiI ATGCAT 2 cut(s) 201, 1071
NspI RCATGY 3 cut(s) 339, 936, 1438
OliI CACNNNNGTG 1 cut(s) 1547
PaeR7I CTCGAG 1 cut(s) 1726
PagI TCATGA 3 cut(s) 190, 369, 865
PcsI WCGNNNNNNNCGW 1 cut(s) 1453
PctI GAATGC 4 cut(s) 954, 1683, 1890, 2002
PdmI GAANNNNTTC 3 cut(s) 9, 1101, 1740
PfeI GAWTC 7 cut(s) 62, 179, 582, 1073, 1112, 1273, 1669
PfoI TCCNGGA 1 cut(s) 1215
PkrI GCNGC 4 cut(s) 1655, 1724, 1931, 2001
PleI GAGTC 3 cut(s) 1612, 1737, 1996
PpsI GAGTC 3 cut(s) 1612, 1737, 1996
PshBI ATTAAT 1 cut(s) 1824
PsiI TTATAA 1 cut(s) 590
Psp124BI GAGCTC 2 cut(s) 667, 1033
Psp6I CCWGG 4 cut(s) 223, 462, 1126, 1215
PspFI CCCAGC 2 cut(s) 57, 1480
PspGI CCWGG 4 cut(s) 223, 462, 1126, 1215
PspN4I GGNNCC 3 cut(s) 1378, 1551, 1972
PspPI GGNCC 1 cut(s) 1971
PspXI VCTCGAGB 1 cut(s) 1726
PstNI CAGNNNCTG 2 cut(s) 760, 1480
PsuI RGATCY 4 cut(s) 23, 1376, 1642, 1960
RruI TCGCGA 1 cut(s) 67
RsaI GTAC 2 cut(s) 686, 1192
RsaNI GTAC 2 cut(s) 685, 1191
RseI CAYNNNNRTG 5 cut(s) 189, 1547, 1688, 1895, 2007
SacI GAGCTC 2 cut(s) 667, 1033
SatI GCNGC 4 cut(s) 1654, 1723, 1930, 2000
Sau3AI GATC 9 cut(s) 23, 217, 1024, 1227, 1376, 1642, 1711, 1918, 1960
Sau96I GGNCC 1 cut(s) 1971
SchI GAGTC 3 cut(s) 1612, 1738, 1997
ScrFI CCNGG 4 cut(s) 225, 464, 1128, 1217
SduI GDGCHC 2 cut(s) 667, 1033
SfaNI GCATC 3 cut(s) 73, 646, 1056
SfcI CTRYAG 1 cut(s) 1079
Sfr274I CTCGAG 1 cut(s) 1726
SinI GGWCC 1 cut(s) 1971
SlaI CTCGAG 1 cut(s) 1726
SmiMI CAYNNNNRTG 5 cut(s) 189, 1547, 1688, 1895, 2007
SmlI CTYRAG 4 cut(s) 1523, 1559, 1726, 1933
SmoI CTYRAG 4 cut(s) 1523, 1559, 1726, 1933
SpeI ACTAGT 1 cut(s) 1774
SsiI CCGC 4 cut(s) 27, 318, 618, 682
SspMI CTAG 8 cut(s) 297, 411, 597, 668, 896, 923, 1673, 1775
SstI GAGCTC 2 cut(s) 667, 1033
StyD4I CCNGG 4 cut(s) 223, 462, 1126, 1215
StyI CCWWGG 2 cut(s) 481, 642
TaaI ACNGT 2 cut(s) 1042, 1740
TaqI TCGA 6 cut(s) 449, 731, 1027, 1226, 1616, 1727
TfiI GAWTC 7 cut(s) 62, 179, 582, 1073, 1112, 1273, 1669
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 4 cut(s) 1653, 1722, 1929, 1999
Tsp45I GTSAC 1 cut(s) 485
Vha464I CTTAAG 1 cut(s) 1523
VpaK11BI GGWCC 1 cut(s) 1971
VspI ATTAAT 1 cut(s) 1824
XapI RAATTY 2 cut(s) 861, 1493
XbaI TCTAGA 2 cut(s) 667, 922
XceI RCATGY 3 cut(s) 339, 936, 1438
XhoI CTCGAG 1 cut(s) 1726
XmnI GAANNNNTTC 3 cut(s) 9, 1101, 1740
XspI CTAG 8 cut(s) 297, 411, 597, 668, 896, 923, 1673, 1775
Zsp2I ATGCAT 2 cut(s) 201, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.