Rh1AG404200
WRKY Family

WRKY Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000067
Physical Location & Seq
Forward (+)
63153087 .. 63154013
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG404200.1

Sequence Viewer

Length: 927 bp
ATGTGGCTTCCTGGAAGAGAAGTTCCAGAATGGTTCAACCTTCGGGATACAGGATGTTCAGCAACTTTCCAAGCACCACTGAATAATTTCAATAACAAGCTTTTAGGATTTGCTATATGCATTGTTATTAAATTCAATGGTGCTCGTCATGATGTATCTGATATGTATGGAAGATGTTATTGGACCTCAAAAGGTAAGCATGGTGAGTACTTCTTCGAATTTGATTTGCTCGGCCGGCAGTTCGGAATTTACAGTATAGAGTCAGATCACCTGTTCATGGCATATTTGCCATGGTCTGGATATGGCAGGAATTCACAAGATAGATTAGATGCATTTAAGATTGTAGTAGAAACTGGAACTTATTCTCCGACAGAAGATTGGTTTTCTACTGGCTGCGGAGTTCGTTTAGTTTATGCTAATCAAGATGAGATGCAAAATAGCGTGACACAGCCCATAATTCATGTGGATGGCCAGACAATGGAGGATGCGGTGCAGCAGGGGGAGGGGTGCTGTGCTATAGGAGGGGTGTCGGGGCTTGGCGCACCTTTCTTTACGGACCAGTTGGAAATAAGAAAGAGTGAAACAGAGTTGGAGGCAGAGTCATCAGAGTCGCGCGAGGGGAGAGGCACGTGCCAGATATTGGAGCTGTTAACAGAGCCGCAGACTGGGAGAAAAGAAGAGGAGGATGGGGAGGGGTGTCAGGTGTTAGGGTCGGCATTCTCTTTGAGAAAGAGAGAAACAGAAAGAGAGGGAGACAGAGTCACAGGAGTCTCTGACGAGGGAGAGATATCGGAGTTGGGCAGCCACAGTGGTCTGGTGGTGCCAAATTCACAAAGTGAGGGCAAAGAAGAGAGAGAATTGATGGGGGAGGAGTCGTTGGAGAGGGTTGTTAGGGCCGCTGTGCAGCTGCTTTTACTGGCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRKY

Protein Analysis

308

Amino Acids

34.26

Weight (kDa)

4.6

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 3 - 142 5.5e-14 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AccB7I CCANNNNNTGG 3 cut(s) 296, 478, 640
AccII CGCG 2 cut(s) 613, 615
AciI CCGC 4 cut(s) 396, 488, 659, 897
AcoI YGGCCR 3 cut(s) 232, 469, 918
AcsI RAATTY 5 cut(s) 131, 218, 246, 310, 826
AcvI CACGTG 1 cut(s) 630
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 5 cut(s) 277, 296, 478, 640, 665
AgsI TTSAA 3 cut(s) 37, 91, 136
AjnI CCWGG 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AloI GAACNNNNNNTCC 3 cut(s) 38, 349, 381
AluBI AGCT 3 cut(s) 100, 646, 907
AluI AGCT 3 cut(s) 100, 646, 907
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 747, 775
AoxI GGCC 4 cut(s) 232, 469, 894, 918
ApeKI GCWGC 5 cut(s) 393, 493, 801, 904, 907
ApoI RAATTY 5 cut(s) 131, 218, 246, 310, 826
Asp700I GAANNNNTTC 2 cut(s) 86, 361
AspLEI GCGC 2 cut(s) 542, 615
AspS9I GGNCC 3 cut(s) 183, 556, 894
AsuC2I CCSGG 1 cut(s) 922
AsuHPI GGTGA 2 cut(s) 215, 260
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 2 cut(s) 183, 556
BalI TGGCCA 1 cut(s) 471
BanI GGYRCC 1 cut(s) 820
BbrPI CACGTG 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 5 cut(s) 380, 505, 813, 894, 916
BccI CCATC 3 cut(s) 461, 680, 856
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 40
BcnI CCSGG 1 cut(s) 922
BcoDI GTCTC 2 cut(s) 747, 775
BfmI CTRYAG 1 cut(s) 516
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 7 cut(s) 394, 494, 659, 802, 897, 905, 908
BlsI GCNGC 7 cut(s) 395, 495, 660, 803, 898, 906, 909
BmcAI AGTACT 1 cut(s) 209
Bme1390I CCNGG 2 cut(s) 12, 922
Bme18I GGWCC 2 cut(s) 183, 556
BmgT120I GGNCC 3 cut(s) 183, 556, 894
BmiI GGNNCC 1 cut(s) 822
BmrFI CCNGG 2 cut(s) 12, 922
BmrI ACTGGG 1 cut(s) 675
BmsI GCATC 3 cut(s) 319, 420, 475
BmuI ACTGGG 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 922
BsaAI YACGTR 1 cut(s) 630
BsaJI CCNNGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 8 cut(s) 349, 379, 584, 614, 744, 774, 860, 890
Bsc4I CCNNNNNNNGG 5 cut(s) 277, 296, 478, 640, 665
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 5 cut(s) 358, 394, 559, 670, 921
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 4 cut(s) 59, 472, 490, 691
BseLI CCNNNNNNNGG 5 cut(s) 277, 296, 478, 640, 665
BseNI ACTGG 5 cut(s) 358, 394, 559, 670, 921
BseRI GAGGAG 2 cut(s) 695, 884
BseX3I CGGCCG 1 cut(s) 232
BseXI GCAGC 5 cut(s) 380, 505, 813, 894, 916
BsgI GTGCAG 2 cut(s) 512, 923
Bsh1236I CGCG 2 cut(s) 613, 615
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 4 cut(s) 234, 471, 896, 920
BshNI GGYRCC 1 cut(s) 820
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 235, 921
BslI CCNNNNNNNGG 5 cut(s) 277, 296, 478, 640, 665
BsmAI GTCTC 2 cut(s) 747, 775
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 4 cut(s) 234, 471, 896, 920
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 265
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 4 cut(s) 396, 488, 659, 897
BspANI GGCC 4 cut(s) 234, 471, 896, 920
BspFNI CGCG 2 cut(s) 613, 615
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 822
BspT104I TTCGAA 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 820
BsrFI RCCGGY 1 cut(s) 234
BsrI ACTGG 5 cut(s) 358, 394, 559, 670, 921
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 254, 809
Bst6I CTCTTC 3 cut(s) 10, 672, 843
BstBAI YACGTR 1 cut(s) 630
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 4 cut(s) 59, 472, 490, 691
BstFNI CGCG 2 cut(s) 613, 615
BstHHI GCGC 2 cut(s) 542, 615
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 2 cut(s) 747, 775
BstMBI GATC 1 cut(s) 265
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 2 cut(s) 10, 920
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 2 cut(s) 613, 615
BstV1I GCAGC 5 cut(s) 380, 505, 813, 894, 916
BstZI CGGCCG 1 cut(s) 232
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 4 cut(s) 234, 471, 896, 920
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 4 cut(s) 59, 472, 490, 691
BtsIMutI CAGTG 2 cut(s) 77, 814
Cac8I GCNNGC 1 cut(s) 236
CciI TCATGA 1 cut(s) 148
CfoI GCGC 2 cut(s) 542, 615
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 3 cut(s) 183, 556, 894
Csp6I GTAC 1 cut(s) 208
CviAII CATG 5 cut(s) 149, 200, 277, 291, 461
CviQI GTAC 1 cut(s) 208
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
DraIII CACNNNGTG 1 cut(s) 836
EaeI YGGCCR 3 cut(s) 232, 469, 918
EagI CGGCCG 1 cut(s) 232
Eam1104I CTCTTC 3 cut(s) 10, 672, 843
EarI CTCTTC 3 cut(s) 10, 672, 843
EclXI CGGCCG 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 290
Eco32I GATATC 1 cut(s) 789
Eco47I GGWCC 2 cut(s) 183, 556
Eco52I CGGCCG 1 cut(s) 232
Eco72I CACGTG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 10
EcoRV GATATC 1 cut(s) 789
EcoT14I CCWWGG 1 cut(s) 290
EcoT22I ATGCAT 2 cut(s) 122, 334
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 5 cut(s) 152, 203, 280, 294, 464
FatI CATG 5 cut(s) 148, 199, 276, 290, 460
Fnu4HI GCNGC 7 cut(s) 394, 494, 659, 802, 897, 905, 908
FokI GGATG 4 cut(s) 66, 479, 497, 698
Fsp4HI GCNGC 7 cut(s) 394, 494, 659, 802, 897, 905, 908
GlaI GCGC 2 cut(s) 541, 614
GluI GCNGC 7 cut(s) 394, 494, 659, 802, 897, 905, 908
HaeIII GGCC 4 cut(s) 234, 471, 896, 920
HapII CCGG 2 cut(s) 235, 921
HhaI GCGC 2 cut(s) 542, 615
Hin1II CATG 5 cut(s) 152, 203, 280, 294, 464
Hin6I GCGC 2 cut(s) 540, 613
HinP1I GCGC 2 cut(s) 540, 613
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 6 cut(s) 260, 599, 608, 759, 768, 872
HpaI GTTAAC 1 cut(s) 651
HpaII CCGG 2 cut(s) 235, 921
HphI GGTGA 2 cut(s) 215, 260
Hpy166II GTNNAC 1 cut(s) 651
Hpy188I TCNGA 7 cut(s) 160, 245, 265, 369, 607, 775, 793
Hpy188III TCNNGA 5 cut(s) 26, 44, 149, 297, 422
Hpy8I GTNNAC 1 cut(s) 651
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 254, 809
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 5 cut(s) 120, 332, 433, 493, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 629
Hsp92II CATG 5 cut(s) 152, 203, 280, 294, 464
HspAI GCGC 2 cut(s) 540, 613
KroI GCCGGC 1 cut(s) 234
KroNI GCCGGC 1 cut(s) 236
KspAI GTTAAC 1 cut(s) 651
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 5 cut(s) 380, 505, 813, 894, 916
LweI GCATC 3 cut(s) 319, 420, 475
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 2 cut(s) 442, 760
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 6 cut(s) 27, 183, 205, 386, 689, 860
MhlI GDGCHC 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 8 cut(s) 85, 131, 218, 246, 310, 456, 826, 857
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 6 cut(s) 269, 608, 617, 768, 777, 881
MmeI TCCRAC 4 cut(s) 392, 543, 570, 858
Mox20I TGGCCA 1 cut(s) 471
Mph1103I ATGCAT 2 cut(s) 122, 334
MroNI GCCGGC 1 cut(s) 234
MroXI GAANNNNTTC 2 cut(s) 86, 361
MscI TGGCCA 1 cut(s) 471
MseI TTAA 3 cut(s) 129, 336, 650
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 2 cut(s) 899, 907
MspI CCGG 2 cut(s) 235, 921
MspR9I CCNGG 2 cut(s) 12, 922
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 2 cut(s) 613, 615
MwoI GCNNNNNNNGC 1 cut(s) 235
NaeI GCCGGC 1 cut(s) 236
NciI CCSGG 1 cut(s) 922
NcoI CCATGG 1 cut(s) 290
NdeII GATC 1 cut(s) 265
NgoMIV GCCGGC 1 cut(s) 234
NlaIII CATG 5 cut(s) 152, 203, 280, 294, 464
NlaIV GGNNCC 1 cut(s) 822
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 2 cut(s) 442, 760
NsiI ATGCAT 2 cut(s) 122, 334
NspV TTCGAA 1 cut(s) 216
PagI TCATGA 1 cut(s) 148
PctI GAATGC 1 cut(s) 716
PdiI GCCGGC 1 cut(s) 236
PdmI GAANNNNTTC 2 cut(s) 86, 361
PflFI GACNNNGTC 1 cut(s) 758
PflMI CCANNNNNTGG 3 cut(s) 296, 478, 640
PfoI TCCNGGA 1 cut(s) 10
PkrI GCNGC 7 cut(s) 395, 495, 660, 803, 898, 906, 909
PleI GAGTC 6 cut(s) 268, 607, 616, 767, 776, 880
PmaCI CACGTG 1 cut(s) 630
PmlI CACGTG 1 cut(s) 630
PpsI GAGTC 6 cut(s) 268, 607, 616, 767, 776, 880
Ppu21I YACGTR 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 10
PspCI CACGTG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 822
PspPI GGNCC 3 cut(s) 183, 556, 894
PsyI GACNNNGTC 1 cut(s) 758
PvuII CAGCTG 1 cut(s) 907
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 3 cut(s) 129, 336, 650
SatI GCNGC 7 cut(s) 394, 494, 659, 802, 897, 905, 908
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 3 cut(s) 183, 556, 894
ScaI AGTACT 1 cut(s) 209
SchI GAGTC 6 cut(s) 269, 608, 617, 768, 777, 881
ScrFI CCNGG 2 cut(s) 12, 922
SduI GDGCHC 1 cut(s) 145
SfaNI GCATC 3 cut(s) 319, 420, 475
SfcI CTRYAG 1 cut(s) 516
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 2 cut(s) 183, 556
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 8 cut(s) 85, 131, 218, 246, 310, 456, 826, 857
SsiI CCGC 4 cut(s) 396, 488, 659, 897
StyD4I CCNGG 2 cut(s) 10, 920
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 254, 809
TaiI ACGT 1 cut(s) 632
TaqI TCGA 1 cut(s) 216
TasI AATT 8 cut(s) 85, 131, 218, 246, 310, 456, 826, 857
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 661, 899
Tru1I TTAA 3 cut(s) 129, 336, 650
Tru9I TTAA 3 cut(s) 129, 336, 650
TscAI CASTG 2 cut(s) 84, 814
TseFI GTSAC 2 cut(s) 442, 760
TseI GCWGC 5 cut(s) 393, 493, 801, 904, 907
Tsp45I GTSAC 2 cut(s) 442, 760
TspDTI ATGAA 2 cut(s) 265, 449
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 2 cut(s) 84, 814
Tth111I GACNNNGTC 1 cut(s) 758
Van91I CCANNNNNTGG 3 cut(s) 296, 478, 640
VpaK11BI GGWCC 2 cut(s) 183, 556
XapI RAATTY 5 cut(s) 131, 218, 246, 310, 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XmnI GAANNNNTTC 2 cut(s) 86, 361
ZrmI AGTACT 1 cut(s) 209
Zsp2I ATGCAT 2 cut(s) 122, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.