MD03G1202400.v1.1

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000067
Physical Location & Seq
Forward (+)
27679953 .. 27682890
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1202400.v1.1.491

Sequence Viewer

Length: 1818 bp
ATGTTTTACTGGTTGTCGTTACAGCATCTGGAAATGTTGGAAGTCATCGATTTAAGACATTCTCAATACCTTAACAAAACCCCCGACATCACTGAAGCAAAAAATCTTGAGATTCTAAATCTCGAAGGTTGTACAAGTTTAACTGAAGTCCACCCATCAATTTCAGATCTTGAGAAACTTGTTTTTTTGAGTCTAAAAGGATGTAAAGAACTTAAGATTCTTTCAAGCAGAATTCACATGAAATCTCTTAAAACCCTTGTTCTTTCTGGCTGCTCAAATCTTGTTAAGTTTCCAGAGATTTCAGGAAGTATGCAGGAGCTATCAGAGCTTTATCTAGATCAGACTGCAATTGAAGAACTTCCCTCATCGATCAGAATTCTTACGGGGCTTGTTACTTTGAACCTAAAGCGTTGCAGAGAACTTAAGAGTCTTCCAAGCAGCATTTGTCAACTCAAGTCCCTTAGATATCTTACTCTATCTGGTTGTCCAAGACTTAAGGAGTTCCCAGAAATTGAAGAAGATATGGAAGGATTAAGAGAGCTTCATTTGGATGGAACATCTATCACACGGATTTTCCCATCAATTGAACGGCTTCAGGGGCTTGTGATACTAAATTTGAAAAATTGCAAAAGCATCGTCTGTCTTCCAGACAGTATCTGTAATTTGGCATACCTTACCCGTCTCACTGTCTCTGGGTGCTCAAGGCTTTGTCACTTGCCTGAGGGCTTAGGAAATGTAGGATCCTTGAGGGACATTGATGTTAAGGGAAGTGGTTTACGTCAACCATTCTCTATGTCAAGTAGGCTTTTGCCTCCAAGATTATTATTTCCTGGATGGAAGAAAATGAAGGCACCATTTCTATTTTCACAACCATCAATCTGGGTTGGTGAATATTATAAAAATTTGAGACAGCTTGATTTAAGTGACTGCAAACTGTTGAGACTACCGGATGTTATTTCTGTTCTCTCCCAATTGGTCACACTAATACTTTGCAGAAACAATTTTGAGAGCTTACCTGCAACTCTAGATCGACTTCATTGTTTAAGACATCTCAATGTAGAAGCTTGCAGGAGACTGAAATCAATACCACAGCTTTCATTGAGTATAAAGGACGTAGATGCGCATGATTGCACTGCTTTGGAAACAGTTTCAACCCCAAACCCGCATGATTGCAATGCTTTGGAAACAGTTTCAATACCAAAGCCTCATAATATGAATCTTTACTTCACATTTTCCAATTGCCTACAGCTGGTACAAAGAAATCCATTTAGGGATATTATGGAAACTCTCTCTCATCATCAGGGTAATCAGCTCCAGCTTCTTTCCTTCAATATGTCTCTTCCTGGAAGTGAAATTCCAGATTGGTTCAGCCATCAGTGCATGGGGTCTTCGGTAACTCTGCAGCTACCGCTGAATTATTACCATAATAAGGTATTGGGGTTTGCTATATGCGCTGTTAGTAAGTTCAGGGGTGCTCATTATTGTGCATCTGATCTCTCTGTTCGATGTTTTTGCACCTTCAAAGGAGATCATGGTGATTTCAATTACAATTTCTATATGGTTGATTGGGGATCCAGAGTCAGATTCCTTGACTCAGATCACATCTTTCTGGGATATGTTCCATGGTCTAAATGTACCTTGATTGAAACTGGAAAGCTGCCCAGTAAACATTGTTACACTGAGGCTACATTCAAAATTGTAGTAAAAGAAAATGGAGCCTATGCGAGCGATTTCAGGGCTGCAGTACGATACCCTTCTATTGGAAGGGTCGGACTTCATTTCATTTATGCCAATCATGAGACAGACAGCAGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

606

Amino Acids

68.54

Weight (kDa)

8.06

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 80 - 151 7.7e-11 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 83 - 181 7.5e-09 Leucine-rich repeat region
LRR_RPS2 PF23247 107 - 238 7.3e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_13 PF23286 151 - 239 8.5e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 178 - 254 8.7e-10 Leucine-rich repeat region
LRR_14 PF23598 301 - 362 8.7e-06 Leucine-rich repeat region
LRR_8 PF13855 301 - 356 5.7e-06 Leucine rich repeat
C-JID PF20160 447 - 598 3.8e-19 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 897
Acc16I TGCGCA 1 cut(s) 1122
Acc36I ACCTGC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 850
AciI CCGC 2 cut(s) 1163, 1409
AclWI GGATC 4 cut(s) 735, 748, 1566, 1579
AcsI RAATTY 5 cut(s) 231, 375, 613, 901, 1353
AcuI CTGAAG 3 cut(s) 114, 165, 578
AfaI GTAC 4 cut(s) 133, 1254, 1636, 1746
AfiI CCNNNNNNNGG 3 cut(s) 1249, 1429, 1760
AflII CTTAAG 3 cut(s) 212, 422, 494
AjnI CCWGG 2 cut(s) 829, 1342
Alw21I GWGCWC 2 cut(s) 701, 1477
Alw26I GTCTC 7 cut(s) 686, 694, 901, 934, 1066, 1341, 1793
AlwI GGATC 4 cut(s) 735, 748, 1566, 1579
AlwNI CAGNNNCTG 2 cut(s) 28, 657
ApeKI GCWGC 5 cut(s) 270, 438, 1402, 1657, 1739
ApoI RAATTY 5 cut(s) 231, 375, 613, 901, 1353
ArsI GACNNNNNNTTYG 2 cut(s) 621, 653
Asp700I GAANNNNTTC 2 cut(s) 357, 591
AspLEI GCGC 2 cut(s) 1123, 1454
AsuHPI GGTGA 2 cut(s) 899, 1547
AxyI CCTNAGG 1 cut(s) 720
BamHI GGATCC 2 cut(s) 740, 1571
BanI GGYRCC 1 cut(s) 850
BbsI GAAGAC 3 cut(s) 422, 635, 1380
Bbv12I GWGCWC 2 cut(s) 701, 1477
BbvI GCAGC 5 cut(s) 257, 450, 1414, 1644, 1726
BccI CCATC 6 cut(s) 163, 545, 586, 828, 880, 1380
BceAI ACGGC 1 cut(s) 605
BcgI CGANNNNNNTGC 4 cut(s) 616, 650, 1494, 1528
BciT130I CCWGG 2 cut(s) 831, 1344
BcoDI GTCTC 7 cut(s) 686, 694, 901, 934, 1066, 1341, 1793
BfaI CTAG 2 cut(s) 335, 1025
BfmI CTRYAG 3 cut(s) 1244, 1400, 1740
BfrI CTTAAG 3 cut(s) 212, 422, 494
BfuAI ACCTGC 1 cut(s) 1024
BglII AGATCT 1 cut(s) 166
BisI GCNGC 5 cut(s) 271, 439, 1403, 1658, 1740
BlsI GCNGC 5 cut(s) 272, 440, 1404, 1659, 1741
Bme1390I CCNGG 2 cut(s) 831, 1344
BmiI GGNNCC 4 cut(s) 742, 852, 1573, 1717
BmrFI CCNGG 2 cut(s) 831, 1344
BmrI ACTGGG 1 cut(s) 1656
BmsI GCATC 4 cut(s) 34, 642, 1108, 1496
BmuI ACTGGG 1 cut(s) 1656
BpiI GAAGAC 3 cut(s) 422, 635, 1380
BpmI CTGGAG 1 cut(s) 1298
Bpu10I CCTNAGC 1 cut(s) 727
BpuEI CTTGAG 5 cut(s) 128, 191, 437, 685, 766
Bsa29I ATCGAT 2 cut(s) 48, 368
BsaJI CCNNGG 1 cut(s) 1622
BsaWI WCCGGW 1 cut(s) 946
Bsc4I CCNNNNNNNGG 3 cut(s) 1249, 1429, 1760
Bse1I ACTGG 3 cut(s) 14, 1654, 1662
Bse21I CCTNAGG 1 cut(s) 720
Bse3DI GCAATG 1 cut(s) 1180
BseBI CCWGG 2 cut(s) 831, 1344
BseCI ATCGAT 2 cut(s) 48, 368
BseDI CCNNGG 1 cut(s) 1622
BseGI GGATG 4 cut(s) 206, 556, 839, 955
BseLI CCNNNNNNNGG 3 cut(s) 1249, 1429, 1760
BseMI GCAATG 1 cut(s) 1180
BseMII CTCAG 3 cut(s) 711, 1608, 1671
BseNI ACTGG 3 cut(s) 14, 1654, 1662
BseXI GCAGC 5 cut(s) 257, 450, 1414, 1644, 1726
BshNI GGYRCC 1 cut(s) 850
BshVI ATCGAT 2 cut(s) 48, 368
BsiHKAI GWGCWC 2 cut(s) 701, 1477
BsiSI CCGG 1 cut(s) 947
BslFI GGGAC 2 cut(s) 442, 764
BslI CCNNNNNNNGG 3 cut(s) 1249, 1429, 1760
BsmAI GTCTC 7 cut(s) 686, 694, 901, 934, 1066, 1341, 1793
BsmBI CGTCTC 1 cut(s) 686
BsmFI GGGAC 2 cut(s) 442, 764
Bsp1286I GDGCHC 2 cut(s) 701, 1477
Bsp1407I TGTACA 1 cut(s) 131
Bsp143I GATC 9 cut(s) 166, 337, 369, 740, 1027, 1492, 1528, 1571, 1597
Bsp19I CCATGG 1 cut(s) 1622
BspACI CCGC 2 cut(s) 1163, 1409
BspCNI CTCAG 3 cut(s) 712, 1607, 1672
BspDI ATCGAT 2 cut(s) 48, 368
BspHI TCATGA 1 cut(s) 1795
BspLI GGNNCC 4 cut(s) 742, 852, 1573, 1717
BspMAI CTGCAG 2 cut(s) 1404, 1744
BspMI ACCTGC 1 cut(s) 1024
BspPI GGATC 4 cut(s) 735, 748, 1566, 1579
BspT107I GGYRCC 1 cut(s) 850
BspTI CTTAAG 3 cut(s) 212, 422, 494
BsrDI GCAATG 1 cut(s) 1180
BsrGI TGTACA 1 cut(s) 131
BsrI ACTGG 3 cut(s) 14, 1654, 1662
BssECI CCNNGG 1 cut(s) 1622
BssMI GATC 9 cut(s) 166, 337, 369, 740, 1027, 1492, 1528, 1571, 1597
BssT1I CCWWGG 1 cut(s) 1622
Bst2UI CCWGG 2 cut(s) 831, 1344
Bst4CI ACNGT 5 cut(s) 653, 688, 936, 1147, 1189
Bst6I CTCTTC 1 cut(s) 1344
BstAFI CTTAAG 3 cut(s) 212, 422, 494
BstAUI TGTACA 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 1066, 1726
BstDEI CTNAG 5 cut(s) 461, 720, 727, 1594, 1680
BstDSI CCRYGG 1 cut(s) 1622
BstF5I GGATG 4 cut(s) 206, 556, 839, 955
BstHHI GCGC 2 cut(s) 1123, 1454
BstKTI GATC 9 cut(s) 169, 340, 372, 743, 1030, 1495, 1531, 1574, 1600
BstMAI GTCTC 7 cut(s) 686, 694, 901, 934, 1066, 1341, 1793
BstMBI GATC 9 cut(s) 166, 337, 369, 740, 1027, 1492, 1528, 1571, 1597
BstMWI GCNNNNNNNGC 5 cut(s) 325, 598, 1377, 1408, 1451
BstNI CCWGG 2 cut(s) 831, 1344
BstSCI CCNGG 2 cut(s) 829, 1342
BstSFI CTRYAG 3 cut(s) 1244, 1400, 1740
BstV1I GCAGC 5 cut(s) 257, 450, 1414, 1644, 1726
BstV2I GAAGAC 3 cut(s) 422, 635, 1380
BstX2I RGATCY 3 cut(s) 166, 740, 1571
BstXI CCANNNNNNTGG 1 cut(s) 879
BstYI RGATCY 3 cut(s) 166, 740, 1571
Bsu15I ATCGAT 2 cut(s) 48, 368
Bsu36I CCTNAGG 1 cut(s) 720
BsuTUI ATCGAT 2 cut(s) 48, 368
BtgI CCRYGG 1 cut(s) 1622
BtsCI GGATG 4 cut(s) 206, 556, 839, 955
BtsI GCAGTG 1 cut(s) 1131
BtsIMutI CAGTG 5 cut(s) 90, 684, 1131, 1382, 1677
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 2 cut(s) 1066, 1726
CaiI CAGNNNCTG 2 cut(s) 28, 657
CciI TCATGA 1 cut(s) 1795
CfoI GCGC 2 cut(s) 1123, 1454
ClaI ATCGAT 2 cut(s) 48, 368
Csp6I GTAC 4 cut(s) 132, 1253, 1635, 1745
CviAII CATG 7 cut(s) 238, 1124, 1166, 1381, 1532, 1623, 1796
CviQI GTAC 4 cut(s) 132, 1253, 1635, 1745
DdeI CTNAG 5 cut(s) 461, 720, 727, 1594, 1680
DpnI GATC 9 cut(s) 168, 339, 371, 742, 1029, 1494, 1530, 1573, 1599
DpnII GATC 9 cut(s) 166, 337, 369, 740, 1027, 1492, 1528, 1571, 1597
Eam1104I CTCTTC 1 cut(s) 1344
EarI CTCTTC 1 cut(s) 1344
Eco130I CCWWGG 1 cut(s) 1622
Eco32I GATATC 1 cut(s) 467
Eco57I CTGAAG 3 cut(s) 114, 165, 578
Eco81I CCTNAGG 1 cut(s) 720
EcoRI GAATTC 2 cut(s) 231, 375
EcoRII CCWGG 2 cut(s) 829, 1342
EcoRV GATATC 1 cut(s) 467
EcoT14I CCWWGG 1 cut(s) 1622
ErhI CCWWGG 1 cut(s) 1622
Esp3I CGTCTC 1 cut(s) 686
FaeI CATG 7 cut(s) 241, 1127, 1169, 1384, 1535, 1626, 1799
FaqI GGGAC 2 cut(s) 442, 764
FatI CATG 7 cut(s) 237, 1123, 1165, 1380, 1531, 1622, 1795
FauI CCCGC 1 cut(s) 1170
Fnu4HI GCNGC 5 cut(s) 271, 439, 1403, 1658, 1740
FokI GGATG 4 cut(s) 213, 563, 846, 962
Fsp4HI GCNGC 5 cut(s) 271, 439, 1403, 1658, 1740
FspAI RTGCGCAY 1 cut(s) 1122
FspBI CTAG 2 cut(s) 335, 1025
FspI TGCGCA 1 cut(s) 1122
GlaI GCGC 2 cut(s) 1122, 1453
GluI GCNGC 5 cut(s) 271, 439, 1403, 1658, 1740
GsuI CTGGAG 1 cut(s) 1298
HapII CCGG 1 cut(s) 947
HhaI GCGC 2 cut(s) 1123, 1454
Hin1II CATG 7 cut(s) 241, 1127, 1169, 1384, 1535, 1626, 1799
Hin6I GCGC 2 cut(s) 1121, 1452
HinP1I GCGC 2 cut(s) 1121, 1452
HincII GTYRAC 2 cut(s) 449, 782
HindII GTYRAC 2 cut(s) 449, 782
HindIII AAGCTT 1 cut(s) 1062
HinfI GANTC 8 cut(s) 112, 190, 217, 427, 1216, 1578, 1584, 1592
HpaII CCGG 1 cut(s) 947
HphI GGTGA 2 cut(s) 899, 1547
Hpy166II GTNNAC 5 cut(s) 151, 449, 776, 782, 1667
Hpy188I TCNGA 8 cut(s) 166, 325, 342, 374, 1492, 1583, 1597, 1772
Hpy8I GTNNAC 5 cut(s) 151, 449, 776, 782, 1667
HpyAV CCTTC 7 cut(s) 119, 521, 841, 1336, 1528, 1758, 1764
HpyCH4III ACNGT 5 cut(s) 653, 688, 936, 1147, 1189
HpyCH4IV ACGT 2 cut(s) 778, 1113
HpyF10VI GCNNNNNNNGC 5 cut(s) 325, 598, 1377, 1408, 1451
HpyF3I CTNAG 5 cut(s) 461, 720, 727, 1594, 1680
HpySE526I ACGT 2 cut(s) 778, 1113
Hsp92II CATG 7 cut(s) 241, 1127, 1169, 1384, 1535, 1626, 1799
HspAI GCGC 2 cut(s) 1121, 1452
Kzo9I GATC 9 cut(s) 166, 337, 369, 740, 1027, 1492, 1528, 1571, 1597
LmnI GCTCC 3 cut(s) 316, 1317, 1715
Lsp1109I GCAGC 5 cut(s) 257, 450, 1414, 1644, 1726
LweI GCATC 4 cut(s) 34, 642, 1108, 1496
MaeI CTAG 2 cut(s) 335, 1025
MaeII ACGT 2 cut(s) 778, 1113
MaeIII GTNAC 7 cut(s) 18, 391, 710, 923, 976, 1393, 1673
MalI GATC 9 cut(s) 168, 339, 371, 742, 1029, 1494, 1530, 1573, 1599
MboI GATC 9 cut(s) 166, 337, 369, 740, 1027, 1492, 1528, 1571, 1597
MboII GAAGA 8 cut(s) 365, 422, 527, 530, 635, 850, 1331, 1380
MfeI CAATTG 4 cut(s) 348, 582, 971, 1237
MflI RGATCY 3 cut(s) 166, 740, 1571
MhlI GDGCHC 2 cut(s) 701, 1477
MlyI GAGTC 4 cut(s) 199, 436, 1586, 1587
MmeI TCCRAC 2 cut(s) 18, 1750
MnlI CCTC 6 cut(s) 373, 715, 741, 822, 1215, 1675
MroXI GAANNNNTTC 2 cut(s) 357, 591
MslI CAYNNNNRTG 3 cut(s) 549, 1053, 1482
MspA1I CMGCKG 2 cut(s) 1249, 1411
MspCI CTTAAG 3 cut(s) 212, 422, 494
MspI CCGG 1 cut(s) 947
MspR9I CCNGG 2 cut(s) 831, 1344
MunI CAATTG 4 cut(s) 348, 582, 971, 1237
MvaI CCWGG 2 cut(s) 831, 1344
MwoI GCNNNNNNNGC 5 cut(s) 325, 598, 1377, 1408, 1451
NcoI CCATGG 1 cut(s) 1622
NdeII GATC 9 cut(s) 166, 337, 369, 740, 1027, 1492, 1528, 1571, 1597
NlaIII CATG 7 cut(s) 241, 1127, 1169, 1384, 1535, 1626, 1799
NlaIV GGNNCC 4 cut(s) 742, 852, 1573, 1717
NmuCI GTSAC 3 cut(s) 710, 923, 976
NsbI TGCGCA 1 cut(s) 1122
PagI TCATGA 1 cut(s) 1795
PdmI GAANNNNTTC 2 cut(s) 357, 591
PfeI GAWTC 4 cut(s) 112, 217, 1216, 1584
PfoI TCCNGGA 2 cut(s) 829, 1342
PkrI GCNGC 5 cut(s) 272, 440, 1404, 1659, 1741
PleI GAGTC 4 cut(s) 198, 435, 1586, 1586
PpsI GAGTC 4 cut(s) 198, 435, 1586, 1586
PsiI TTATAA 1 cut(s) 897
Psp6I CCWGG 2 cut(s) 829, 1342
PspGI CCWGG 2 cut(s) 829, 1342
PspN4I GGNNCC 4 cut(s) 742, 852, 1573, 1717
PstI CTGCAG 2 cut(s) 1404, 1744
PstNI CAGNNNCTG 2 cut(s) 28, 657
PsuI RGATCY 3 cut(s) 166, 740, 1571
PvuII CAGCTG 1 cut(s) 1249
RsaI GTAC 4 cut(s) 133, 1254, 1636, 1746
RsaNI GTAC 4 cut(s) 132, 1253, 1635, 1745
RseI CAYNNNNRTG 3 cut(s) 549, 1053, 1482
SatI GCNGC 5 cut(s) 271, 439, 1403, 1658, 1740
Sau3AI GATC 9 cut(s) 166, 337, 369, 740, 1027, 1492, 1528, 1571, 1597
SchI GAGTC 4 cut(s) 199, 436, 1586, 1587
ScrFI CCNGG 2 cut(s) 831, 1344
SduI GDGCHC 2 cut(s) 701, 1477
SfaNI GCATC 4 cut(s) 34, 642, 1108, 1496
SfcI CTRYAG 3 cut(s) 1244, 1400, 1740
SmiMI CAYNNNNRTG 3 cut(s) 549, 1053, 1482
SmlI CTYRAG 8 cut(s) 107, 170, 212, 422, 452, 494, 700, 745
SmoI CTYRAG 8 cut(s) 107, 170, 212, 422, 452, 494, 700, 745
SsiI CCGC 2 cut(s) 1163, 1409
SspI AATATT 1 cut(s) 893
SspMI CTAG 2 cut(s) 335, 1025
StyD4I CCNGG 2 cut(s) 829, 1342
StyI CCWWGG 1 cut(s) 1622
TaaI ACNGT 5 cut(s) 653, 688, 936, 1147, 1189
TaiI ACGT 2 cut(s) 781, 1116
TaqI TCGA 5 cut(s) 48, 123, 368, 1030, 1504
TatI WGTACW 1 cut(s) 131
TfiI GAWTC 4 cut(s) 112, 217, 1216, 1584
TscAI CASTG 5 cut(s) 97, 691, 1138, 1382, 1684
TseFI GTSAC 3 cut(s) 710, 923, 976
TseI GCWGC 5 cut(s) 270, 438, 1402, 1657, 1739
Tsp45I GTSAC 3 cut(s) 710, 923, 976
TspDTI ATGAA 8 cut(s) 254, 533, 860, 1025, 1086, 1229, 1766, 1771
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 5 cut(s) 97, 691, 1138, 1382, 1684
Vha464I CTTAAG 3 cut(s) 212, 422, 494
XapI RAATTY 5 cut(s) 231, 375, 613, 901, 1353
XbaI TCTAGA 2 cut(s) 334, 1024
XmnI GAANNNNTTC 2 cut(s) 357, 591
XspI CTAG 2 cut(s) 335, 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.