TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 189 | 4.5e-56 | TIR domain |
| TIR_2 | PF13676 | 15 - 113 | 4.3e-14 | TIR domain |
| NB-ARC | PF00931 | 193 - 361 | 2.5e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 429 - 499 | 2.1e-22 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 709 - 818 | 2.1e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 718 - 801 | 7.5e-15 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 788 - 872 | 1.1e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 815 - 892 | 2.5e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 858 - 938 | 7.1e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 939 - 1008 | 1.4e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 941 - 1038 | 1.6e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 1009 - 1076 | 5.2e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 1009 - 1092 | 5e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 1079 - 1148 | 1.4e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 1081 - 1178 | 8.7e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 1149 - 1233 | 5.4e-14 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 1151 - 1232 | 2.9e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 971 |
| AatII | GACGTC | 1 cut(s) | 45 |
| AccB1I | GGYRCC | 2 cut(s) | 304, 1818 |
| AccII | CGCG | 4 cut(s) | 140, 387, 469, 681 |
| AccIII | TCCGGA | 1 cut(s) | 455 |
| AciI | CCGC | 5 cut(s) | 140, 429, 951, 1232, 1787 |
| AcoI | YGGCCR | 3 cut(s) | 88, 1744, 1853 |
| AcsI | RAATTY | 6 cut(s) | 52, 595, 1242, 1353, 1952, 2871 |
| AcuI | CTGAAG | 3 cut(s) | 354, 1057, 1656 |
| AcyI | GRCGYC | 1 cut(s) | 42 |
| AfaI | GTAC | 1 cut(s) | 2044 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1237, 1238, 1385, 1603 |
| AflII | CTTAAG | 3 cut(s) | 1030, 1982, 2123 |
| AjiI | CACGTC | 1 cut(s) | 243 |
| AjnI | CCWGG | 4 cut(s) | 270, 610, 1507, 1596 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 912, 944, 1853, 1885 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1380, 1412, 1781, 1813 |
| Alw21I | GWGCWC | 2 cut(s) | 106, 1414 |
| Alw26I | GTCTC | 3 cut(s) | 544, 1429, 2160 |
| Ama87I | CYCGRG | 2 cut(s) | 1022, 1193 |
| Aor13HI | TCCGGA | 1 cut(s) | 455 |
| AoxI | GGCC | 9 cut(s) | 88, 1744, 1853, 2296, 2506, 2749, 2959, 3169, 3589 |
| ApoI | RAATTY | 6 cut(s) | 52, 595, 1242, 1353, 1952, 2871 |
| AseI | ATTAAT | 7 cut(s) | 2283, 2493, 2736, 2946, 3156, 3366, 3576 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 783, 1482, 1542 |
| AspLEI | GCGC | 1 cut(s) | 683 |
| AsuHPI | GGTGA | 3 cut(s) | 424, 628, 1691 |
| AsuII | TTCGAA | 1 cut(s) | 2034 |
| AvaI | CYCGRG | 2 cut(s) | 1022, 1193 |
| AvaII | GGWCC | 7 cut(s) | 426, 2311, 2521, 2764, 2974, 3184, 3394 |
| BalI | TGGCCA | 2 cut(s) | 1746, 1855 |
| BanI | GGYRCC | 2 cut(s) | 304, 1818 |
| BanII | GRGCYC | 3 cut(s) | 106, 1023, 1414 |
| BbsI | GAAGAC | 6 cut(s) | 15, 37, 72, 2718, 2928, 3374 |
| Bbv12I | GWGCWC | 2 cut(s) | 106, 1414 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 64, 98, 467, 501 |
| BciT130I | CCWGG | 4 cut(s) | 272, 612, 1509, 1598 |
| BciVI | GTATCC | 1 cut(s) | 277 |
| BclI | TGATCA | 1 cut(s) | 1102 |
| BcoDI | GTCTC | 3 cut(s) | 544, 1429, 2160 |
| BfaI | CTAG | 4 cut(s) | 792, 978, 1304, 1460 |
| BfmI | CTRYAG | 3 cut(s) | 97, 1572, 1900 |
| BfrI | CTTAAG | 3 cut(s) | 1030, 1982, 2123 |
| BfuI | GTATCC | 1 cut(s) | 277 |
| BglII | AGATCT | 3 cut(s) | 78, 2573, 3026 |
| BlpI | GCTNAGC | 1 cut(s) | 1932 |
| Bme1390I | CCNGG | 4 cut(s) | 272, 612, 1509, 1598 |
| Bme18I | GGWCC | 7 cut(s) | 426, 2311, 2521, 2764, 2974, 3184, 3394 |
| BmeT110I | CYCGRG | 2 cut(s) | 1022, 1193 |
| BmgBI | CACGTC | 1 cut(s) | 243 |
| BmiI | GGNNCC | 4 cut(s) | 306, 841, 1038, 1820 |
| BmrFI | CCNGG | 4 cut(s) | 272, 612, 1509, 1598 |
| BmsI | GCATC | 5 cut(s) | 475, 1437, 1613, 1917, 2148 |
| BpiI | GAAGAC | 6 cut(s) | 15, 37, 72, 2718, 2928, 3374 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1610, 1642 |
| BpmI | CTGGAG | 2 cut(s) | 442, 1463 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1932 |
| Bpu14I | TTCGAA | 1 cut(s) | 2034 |
| BsaBI | GATNNNNATC | 2 cut(s) | 206, 1545 |
| BsaHI | GRCGYC | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 3 cut(s) | 611, 1508, 2854 |
| BsaWI | WCCGGW | 2 cut(s) | 455, 2177 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1504, 1534 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1237, 1238, 1385, 1603 |
| Bse1I | ACTGG | 7 cut(s) | 264, 1281, 1390, 1446, 1784, 2149, 2414 |
| Bse3DI | GCAATG | 1 cut(s) | 1187 |
| Bse8I | GATNNNNATC | 2 cut(s) | 206, 1545 |
| BseAI | TCCGGA | 1 cut(s) | 455 |
| BseBI | CCWGG | 4 cut(s) | 272, 612, 1509, 1598 |
| BseDI | CCNNGG | 3 cut(s) | 611, 1508, 2854 |
| BseGI | GGATG | 8 cut(s) | 464, 487, 517, 1123, 1285, 1628, 1856, 2066 |
| BseJI | GATNNNNATC | 2 cut(s) | 206, 1545 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1237, 1238, 1385, 1603 |
| BseMI | GCAATG | 1 cut(s) | 1187 |
| BseMII | CTCAG | 6 cut(s) | 163, 1440, 1923, 2018, 2196, 2616 |
| BseNI | ACTGG | 7 cut(s) | 264, 1281, 1390, 1446, 1784, 2149, 2414 |
| BseRI | GAGGAG | 3 cut(s) | 532, 2450, 3323 |
| BseYI | CCCAGC | 1 cut(s) | 2912 |
| BsgI | GTGCAG | 2 cut(s) | 783, 833 |
| Bsh1236I | CGCG | 4 cut(s) | 140, 387, 469, 681 |
| Bsh1285I | CGRYCG | 1 cut(s) | 210 |
| BshFI | GGCC | 9 cut(s) | 90, 1746, 1855, 2298, 2508, 2751, 2961, 3171, 3591 |
| BshNI | GGYRCC | 2 cut(s) | 304, 1818 |
| BsiEI | CGRYCG | 1 cut(s) | 210 |
| BsiHKAI | GWGCWC | 2 cut(s) | 106, 1414 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1022, 1193 |
| BsiSI | CCGG | 2 cut(s) | 456, 2178 |
| BslFI | GGGAC | 7 cut(s) | 1450, 2266, 2719, 2929, 3139, 3349, 3559 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1237, 1238, 1385, 1603 |
| BsmAI | GTCTC | 3 cut(s) | 544, 1429, 2160 |
| BsmFI | GGGAC | 7 cut(s) | 1450, 2266, 2719, 2929, 3139, 3349, 3559 |
| BsmI | GAATGC | 8 cut(s) | 940, 2352, 2562, 2805, 3015, 3225, 3435, 3645 |
| BsnI | GGCC | 9 cut(s) | 90, 1746, 1855, 2298, 2508, 2751, 2961, 3171, 3591 |
| BsoBI | CYCGRG | 2 cut(s) | 1022, 1193 |
| Bsp119I | TTCGAA | 1 cut(s) | 2034 |
| Bsp1286I | GDGCHC | 3 cut(s) | 106, 1023, 1414 |
| Bsp13I | TCCGGA | 1 cut(s) | 455 |
| Bsp1407I | TGTACA | 1 cut(s) | 2042 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1932 |
| Bsp68I | TCGCGA | 1 cut(s) | 469 |
| BspACI | CCGC | 5 cut(s) | 140, 429, 951, 1232, 1787 |
| BspANI | GGCC | 9 cut(s) | 90, 1746, 1855, 2298, 2508, 2751, 2961, 3171, 3591 |
| BspCNI | CTCAG | 6 cut(s) | 162, 1439, 1924, 2019, 2197, 2617 |
| BspEI | TCCGGA | 1 cut(s) | 455 |
| BspFNI | CGCG | 4 cut(s) | 140, 387, 469, 681 |
| BspHI | TCATGA | 2 cut(s) | 1671, 3286 |
| BspLI | GGNNCC | 4 cut(s) | 306, 841, 1038, 1820 |
| BspQI | GCTCTTC | 1 cut(s) | 410 |
| BspT104I | TTCGAA | 1 cut(s) | 2034 |
| BspT107I | GGYRCC | 2 cut(s) | 304, 1818 |
| BspTI | CTTAAG | 3 cut(s) | 1030, 1982, 2123 |
| BsrDI | GCAATG | 1 cut(s) | 1187 |
| BsrGI | TGTACA | 1 cut(s) | 2042 |
| BsrI | ACTGG | 7 cut(s) | 264, 1281, 1390, 1446, 1784, 2149, 2414 |
| BssECI | CCNNGG | 3 cut(s) | 611, 1508, 2854 |
| BssNI | GRCGYC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 1 cut(s) | 2854 |
| Bst2UI | CCWGG | 4 cut(s) | 272, 612, 1509, 1598 |
| Bst4CI | ACNGT | 9 cut(s) | 603, 634, 1364, 2515, 2724, 2934, 2968, 3178, 3598 |
| BstACI | GRCGYC | 1 cut(s) | 42 |
| BstAFI | CTTAAG | 3 cut(s) | 1030, 1982, 2123 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 781 |
| BstAUI | TGTACA | 1 cut(s) | 2042 |
| BstBI | TTCGAA | 1 cut(s) | 2034 |
| BstDEI | CTNAG | 7 cut(s) | 149, 1426, 1661, 1932, 2027, 2205, 2625 |
| BstF5I | GGATG | 8 cut(s) | 464, 487, 517, 1123, 1285, 1628, 1856, 2066 |
| BstFNI | CGCG | 4 cut(s) | 140, 387, 469, 681 |
| BstHHI | GCGC | 1 cut(s) | 683 |
| BstMAI | GTCTC | 3 cut(s) | 544, 1429, 2160 |
| BstMCI | CGRYCG | 1 cut(s) | 210 |
| BstNI | CCWGG | 4 cut(s) | 272, 612, 1509, 1598 |
| BstNSI | RCATGY | 1 cut(s) | 1317 |
| BstSCI | CCNGG | 4 cut(s) | 270, 610, 1507, 1596 |
| BstSFI | CTRYAG | 3 cut(s) | 97, 1572, 1900 |
| BstUI | CGCG | 4 cut(s) | 140, 387, 469, 681 |
| BstV2I | GAAGAC | 6 cut(s) | 15, 37, 72, 2718, 2928, 3374 |
| BstX2I | RGATCY | 9 cut(s) | 78, 1227, 2363, 2573, 2816, 3026, 3236, 3446, 3656 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1597 |
| BstYI | RGATCY | 9 cut(s) | 78, 1227, 2363, 2573, 2816, 3026, 3236, 3446, 3656 |
| BsuI | GTATCC | 1 cut(s) | 277 |
| BsuRI | GGCC | 9 cut(s) | 90, 1746, 1855, 2298, 2508, 2751, 2961, 3171, 3591 |
| BtgZI | GCGATG | 1 cut(s) | 658 |
| BtrI | CACGTC | 1 cut(s) | 243 |
| BtsCI | GGATG | 8 cut(s) | 464, 487, 517, 1123, 1285, 1628, 1856, 2066 |
| BtsIMutI | CAGTG | 6 cut(s) | 599, 630, 1439, 1777, 2142, 2421 |
| BtuMI | TCGCGA | 1 cut(s) | 469 |
| CciI | TCATGA | 2 cut(s) | 1671, 3286 |
| CfoI | GCGC | 1 cut(s) | 683 |
| CseI | GACGC | 2 cut(s) | 146, 1694 |
| Csp6I | GTAC | 1 cut(s) | 2043 |
| CviQI | GTAC | 1 cut(s) | 2043 |
| DdeI | CTNAG | 7 cut(s) | 149, 1426, 1661, 1932, 2027, 2205, 2625 |
| EaeI | YGGCCR | 3 cut(s) | 88, 1744, 1853 |
| Ecl136II | GAGCTC | 2 cut(s) | 104, 1412 |
| Eco130I | CCWWGG | 1 cut(s) | 2854 |
| Eco24I | GRGCYC | 3 cut(s) | 106, 1023, 1414 |
| Eco47I | GGWCC | 7 cut(s) | 426, 2311, 2521, 2764, 2974, 3184, 3394 |
| Eco53kI | GAGCTC | 2 cut(s) | 104, 1412 |
| Eco57I | CTGAAG | 3 cut(s) | 354, 1057, 1656 |
| Eco88I | CYCGRG | 2 cut(s) | 1022, 1193 |
| EcoICRI | GAGCTC | 2 cut(s) | 104, 1412 |
| EcoRI | GAATTC | 2 cut(s) | 595, 1242 |
| EcoRII | CCWGG | 4 cut(s) | 270, 610, 1507, 1596 |
| EcoT14I | CCWWGG | 1 cut(s) | 2854 |
| EcoT22I | ATGCAT | 1 cut(s) | 1452 |
| EcoT38I | GRGCYC | 3 cut(s) | 106, 1023, 1414 |
| ErhI | CCWWGG | 1 cut(s) | 2854 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 731, 763, 771, 803, 912, 944, 1283, 1315 |
| FaqI | GGGAC | 7 cut(s) | 1450, 2266, 2719, 2929, 3139, 3349, 3559 |
| FauI | CCCGC | 1 cut(s) | 1239 |
| FauNDI | CATATG | 6 cut(s) | 771, 2358, 2568, 2811, 3021, 3441 |
| FbaI | TGATCA | 1 cut(s) | 1102 |
| FokI | GGATG | 8 cut(s) | 471, 494, 524, 1130, 1292, 1635, 1843, 2053 |
| FriOI | GRGCYC | 3 cut(s) | 106, 1023, 1414 |
| FspBI | CTAG | 4 cut(s) | 792, 978, 1304, 1460 |
| GlaI | GCGC | 1 cut(s) | 682 |
| GsaI | CCCAGC | 1 cut(s) | 2916 |
| GsuI | CTGGAG | 2 cut(s) | 442, 1463 |
| HaeIII | GGCC | 9 cut(s) | 90, 1746, 1855, 2298, 2508, 2751, 2961, 3171, 3591 |
| HapII | CCGG | 2 cut(s) | 456, 2178 |
| HgaI | GACGC | 2 cut(s) | 146, 1694 |
| HhaI | GCGC | 1 cut(s) | 683 |
| Hin1I | GRCGYC | 1 cut(s) | 42 |
| Hin6I | GCGC | 1 cut(s) | 681 |
| HinP1I | GCGC | 1 cut(s) | 681 |
| HincII | GTYRAC | 1 cut(s) | 2062 |
| HindII | GTYRAC | 1 cut(s) | 2062 |
| HindIII | AAGCTT | 5 cut(s) | 366, 491, 714, 1264, 1638 |
| HpaII | CCGG | 2 cut(s) | 456, 2178 |
| HphI | GGTGA | 3 cut(s) | 424, 628, 1691 |
| Hpy166II | GTNNAC | 3 cut(s) | 1885, 2062, 2865 |
| Hpy8I | GTNNAC | 3 cut(s) | 1885, 2062, 2865 |
| Hpy99I | CGWCG | 4 cut(s) | 44, 89, 140, 244 |
| HpyAV | CCTTC | 9 cut(s) | 139, 737, 796, 1081, 2283, 2493, 3156, 3366, 3576 |
| HpyCH4III | ACNGT | 9 cut(s) | 603, 634, 1364, 2515, 2724, 2934, 2968, 3178, 3598 |
| HpyCH4IV | ACGT | 5 cut(s) | 42, 242, 607, 827, 897 |
| HpyF3I | CTNAG | 7 cut(s) | 149, 1426, 1661, 1932, 2027, 2205, 2625 |
| HpySE526I | ACGT | 5 cut(s) | 42, 242, 607, 827, 897 |
| Hsp92I | GRCGYC | 1 cut(s) | 42 |
| HspAI | GCGC | 1 cut(s) | 681 |
| Kpn2I | TCCGGA | 1 cut(s) | 455 |
| Ksp22I | TGATCA | 1 cut(s) | 1102 |
| LguI | GCTCTTC | 1 cut(s) | 410 |
| LmnI | GCTCC | 6 cut(s) | 1001, 1036, 1166, 1928, 2437, 3310 |
| LweI | GCATC | 5 cut(s) | 475, 1437, 1613, 1917, 2148 |
| MaeI | CTAG | 4 cut(s) | 792, 978, 1304, 1460 |
| MaeII | ACGT | 5 cut(s) | 42, 242, 607, 827, 897 |
| MaeIII | GTNAC | 1 cut(s) | 603 |
| MfeI | CAATTG | 1 cut(s) | 1811 |
| MflI | RGATCY | 9 cut(s) | 78, 1227, 2363, 2573, 2816, 3026, 3236, 3446, 3656 |
| MhlI | GDGCHC | 3 cut(s) | 106, 1023, 1414 |
| MlsI | TGGCCA | 2 cut(s) | 1746, 1855 |
| MluNI | TGGCCA | 2 cut(s) | 1746, 1855 |
| MlyI | GAGTC | 2 cut(s) | 203, 2110 |
| MmeI | TCCRAC | 4 cut(s) | 547, 616, 810, 1884 |
| Mox20I | TGGCCA | 2 cut(s) | 1746, 1855 |
| Mph1103I | ATGCAT | 1 cut(s) | 1452 |
| MroI | TCCGGA | 1 cut(s) | 455 |
| MroXI | GAANNNNTTC | 3 cut(s) | 783, 1482, 1542 |
| MscI | TGGCCA | 2 cut(s) | 1746, 1855 |
| Msp20I | TGGCCA | 2 cut(s) | 1746, 1855 |
| MspCI | CTTAAG | 3 cut(s) | 1030, 1982, 2123 |
| MspI | CCGG | 2 cut(s) | 456, 2178 |
| MspR9I | CCNGG | 4 cut(s) | 272, 612, 1509, 1598 |
| MunI | CAATTG | 1 cut(s) | 1811 |
| Mva1269I | GAATGC | 8 cut(s) | 940, 2352, 2562, 2805, 3015, 3225, 3435, 3645 |
| MvaI | CCWGG | 4 cut(s) | 272, 612, 1509, 1598 |
| MvnI | CGCG | 4 cut(s) | 140, 387, 469, 681 |
| NdeI | CATATG | 6 cut(s) | 771, 2358, 2568, 2811, 3021, 3441 |
| NlaIV | GGNNCC | 4 cut(s) | 306, 841, 1038, 1820 |
| NmeAIII | GCCGAG | 7 cut(s) | 2370, 2580, 2823, 3033, 3243, 3453, 3663 |
| NruI | TCGCGA | 1 cut(s) | 469 |
| NsiI | ATGCAT | 1 cut(s) | 1452 |
| NspI | RCATGY | 1 cut(s) | 1317 |
| NspV | TTCGAA | 1 cut(s) | 2034 |
| PagI | TCATGA | 2 cut(s) | 1671, 3286 |
| PciSI | GCTCTTC | 1 cut(s) | 410 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 2323, 2776, 3406 |
| PctI | GAATGC | 8 cut(s) | 940, 2352, 2562, 2805, 3015, 3225, 3435, 3645 |
| PdmI | GAANNNNTTC | 3 cut(s) | 783, 1482, 1542 |
| PfoI | TCCNGGA | 1 cut(s) | 1596 |
| Ple19I | CGATCG | 1 cut(s) | 210 |
| PleI | GAGTC | 2 cut(s) | 202, 2109 |
| PpsI | GAGTC | 2 cut(s) | 202, 2109 |
| PshBI | ATTAAT | 7 cut(s) | 2283, 2493, 2736, 2946, 3156, 3366, 3576 |
| PsiI | TTATAA | 1 cut(s) | 971 |
| Psp124BI | GAGCTC | 2 cut(s) | 106, 1414 |
| Psp6I | CCWGG | 4 cut(s) | 270, 610, 1507, 1596 |
| PspFI | CCCAGC | 1 cut(s) | 2912 |
| PspGI | CCWGG | 4 cut(s) | 270, 610, 1507, 1596 |
| PspN4I | GGNNCC | 4 cut(s) | 306, 841, 1038, 1820 |
| PsuI | RGATCY | 9 cut(s) | 78, 1227, 2363, 2573, 2816, 3026, 3236, 3446, 3656 |
| PvuI | CGATCG | 1 cut(s) | 210 |
| RruI | TCGCGA | 1 cut(s) | 469 |
| RsaI | GTAC | 1 cut(s) | 2044 |
| RsaNI | GTAC | 1 cut(s) | 2043 |
| SacI | GAGCTC | 2 cut(s) | 106, 1414 |
| SapI | GCTCTTC | 1 cut(s) | 410 |
| SchI | GAGTC | 2 cut(s) | 203, 2110 |
| ScrFI | CCNGG | 4 cut(s) | 272, 612, 1509, 1598 |
| SduI | GDGCHC | 3 cut(s) | 106, 1023, 1414 |
| SfaNI | GCATC | 5 cut(s) | 475, 1437, 1613, 1917, 2148 |
| SfcI | CTRYAG | 3 cut(s) | 97, 1572, 1900 |
| SfuI | TTCGAA | 1 cut(s) | 2034 |
| SinI | GGWCC | 7 cut(s) | 426, 2311, 2521, 2764, 2974, 3184, 3394 |
| SsiI | CCGC | 5 cut(s) | 140, 429, 951, 1232, 1787 |
| SspMI | CTAG | 4 cut(s) | 792, 978, 1304, 1460 |
| SstI | GAGCTC | 2 cut(s) | 106, 1414 |
| StyD4I | CCNGG | 4 cut(s) | 270, 610, 1507, 1596 |
| StyI | CCWWGG | 1 cut(s) | 2854 |
| TaaI | ACNGT | 9 cut(s) | 603, 634, 1364, 2515, 2724, 2934, 2968, 3178, 3598 |
| TaiI | ACGT | 5 cut(s) | 45, 245, 610, 830, 900 |
| TatI | WGTACW | 1 cut(s) | 2042 |
| TscAI | CASTG | 6 cut(s) | 606, 637, 1446, 1784, 2149, 2421 |
| TspRI | CASTG | 6 cut(s) | 606, 637, 1446, 1784, 2149, 2421 |
| Vha464I | CTTAAG | 3 cut(s) | 1030, 1982, 2123 |
| VpaK11BI | GGWCC | 7 cut(s) | 426, 2311, 2521, 2764, 2974, 3184, 3394 |
| VspI | ATTAAT | 7 cut(s) | 2283, 2493, 2736, 2946, 3156, 3366, 3576 |
| XapI | RAATTY | 6 cut(s) | 52, 595, 1242, 1353, 1952, 2871 |
| XbaI | TCTAGA | 2 cut(s) | 791, 1303 |
| XceI | RCATGY | 1 cut(s) | 1317 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 850 |
| XmnI | GAANNNNTTC | 3 cut(s) | 783, 1482, 1542 |
| XspI | CTAG | 4 cut(s) | 792, 978, 1304, 1460 |
| ZraI | GACGTC | 1 cut(s) | 43 |
| Zsp2I | ATGCAT | 1 cut(s) | 1452 |