Rmu_sc0011709.1_g000003

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011709.1
OG0000067
Physical Location & Seq
Reverse (-)
13997 .. 19285
5289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011709.1_g000003.1.cds

Sequence Viewer

Length: 4116 bp
atggctgcttcttcgtctccctcatctggtggtggttggaactatgacgtgttcctcaattttagaggcgaggatactcgcaagatctttgtaggccatctccacaaagctcttgatctggaagcaatcaacgcattcatagactctgaagatctccgcaaaggcaacgacctttcagagttgctcacggctattgaagactccaggctttcgatagtagttttctcccaaaactatgcttcctcaaagtggtgcttaaaagaactggtcaagatactggaatgcatgtctacaaaaaagcacctggtggtgcccattttttatgaagtagatccctctgatatccgcaaagtaaacggaaggtttgcggaggcttttgcaaaacatgaacatgattctaatgccgacatggaagaagttcatatgtggaagtctgctctaactgaagccaccaacttatctgggtgggattctcgtaattacaaggatgatgccaagcttattgagaaaattgttgaagatatttctaaaaaattggtccacatccgatccaataaagtaagtaacttggttggaatggactcccacattgcgaaaatgagttcactattagaccttggtgaggacgatgttcgtgttgttggagtatatggaatgcctggtatagggaaaacaaccattgctagagctatttatgacgaacttgtttgtctatttgatcactattgctttcttgaaaatgtcaaggaaggtttcaagcataatggtgccatacatatgcaggaagaacttctatctaggatttttgagaaaagcgtgcgcagtctaggcactttgagtagaggttccaagatgataatggataggctgagtaagaaaaaagttctgcttgttcttgatgatgtagagaactttaaccaaattgaagagttacttggaaagcagcattcatttggtagcgggagtagaatcattgtaaccactagggatatacaatcactcagtggagttaatgagagatatagtcccatgtttctaagcgatggtgaagctcttgaacttttttggcagtatgccttcagaacaaaccaacctacgagagagtatgatcctctctcaaggcgtgctgtagaatatgctcaaggtctacctttagcactcaaagttttgggagctagtcttgatggcaaaagtatacgtgagtgggaagatgagctagagaaaataaaggaaatcccgcataaggaaattcagggtgtgcttagaacaagctttgacggactggatccttcacagcaggaaatctttctagacattgcatgtttctttagaggaatggacgaaggctatgtaatcaaaattctggaaaattgtggcttctatccccacagtggattacaagtactacgtgatagagctctcttaactatctcatatggcaataggcttgaaatgcatgatttaatacaggatatgggttggcaaatcgtccgccaacaatctattaaagagcctgggaagcgcagtcgtttgtggacttatgaagacgtggatcgtgtattagctcaaaatacggctacagaagcagttgaaggcataatgctggacttgtcgaagtcaaaagacgttgacatagatgctgaagcttttgttagaatgacgaatctaagactgctcttaatcggttataaccactacatagacttcaatgcgaaagattttccattggagctgttacaccagccaagagatgagtgtaaacaacacgtgagtggggttgtaaagtttctttctcgtgacttgaggtatctcatgtggcatggatgccccctaaagtccttgccatccaattttggcccgaagaatcttgtggatcttgacatgcgttttagccacattgaacaactttgggaaggaatcaagcctttcaaaaagttaaaattcatcaatttgagtcattcgcattaccttaccacaacccccgacttcactgaagcaacaaatgtggaaacactagttcttgacggttgttcaagtctacttgatgttaactcatccatttcagcgcttaaaaaccttgtattcttgtgcctaagaggatgcaaagaacttgagaatcttcccagcagcatttttttgaagtctcttaaaatccttgatctttctggctgctcaaatctcgtaaagtttccagagatttcagggattatggaggacctatctgaaatttttctaaatgagactgcaatagaagagttgccctcatcaattgaacggcttcaggggcttgtgttattacatttgagaaactgtagaagtcttgtccgtcttccggacaatatatgtaatttggtacgtcttaaagatctcactctctctgggtgctcaaagctgtatcatttgcctgagaacttggggaatttagaatccttgatgtaccttgaagtagaaggaagtggtataagagaactcccattctctatcttgtgcttgaaaaggctgaaagcattatcatgtgatggatgtaaagaaatgactatgcccttttcatcatggtcatcatcaattgaagaatataattgtagatactctggcctgctacatcttgatttaagtgacagcaatctgtgggaattatcggatggtattgctcacttgtccgcattgaaaaccttagagctgcgcagaaccaacttggagaggttacctgcaacgatgaatcaacttcgccgtttgacacgtcttgaattggaagcttgcaagagactgaaatcaataccagagcttccatcaagtataaattacatagatgctcatgattgcagggctttggaaaccgttgcaaaaccaaatactcggtgctctatgaatctttgcttcatattttctaattgcctccaactggtacaaacgaatctatttagagatattgtggaaactcattctcatcaccagggtgattatcgacttctgctttcctttaatatgtctcttcctggaagtgagattcctgattggttcaattttcaatgtaggggatcctcatttactgtacagctacccccaaattggtttgataataagtttttggggttcgctatatgtgctgttggcgacatcaagggttctcagaatgatgcatctgatctatccgctctatgtcattgtagcttaaaaggaaatcatggtcagtacagtttcagttctactttgcttgattggggtttcactactgatagaatcctcaagtcggatcatatgttcatggcatatgtgccatggtctgagtatcgcttcattgaagagggaaagctggtcaatgaacggtatttcactgaggccacatttgagattgtagtagaaaatagagttgatagacatggtttcgggacagtaataaaccgccattgcatcacaagttgcggagttcgtttctttcatggtgattacatggaggagcaaattctaaccatcagcgaaaccaaatctcataatgacagctgtgacatcctttcggttagtaggaaaggaaaagaaggggttggggtgcggttggaggagtctccagcggaaggcagctctgccggtgagagcaagaagaggccgggttcagagggtcagaagggttccaacaagcgaagaaagagtccagagtcatggacagtggtttcaaacacacttgatgatggtcaggtttggaggaagtatgggcagaaggaaatcctgggttctccatatccaagggcttacttcagatgtacccgcaagtatgatcaaggttgccaagcaaccaaacgagtccaactagtccaagacaccccaaaggagtacgaaattacctacaaaggaaaccacacgtgcgtaaacatgacgatgatcatgggagcctccgatcctgctacttggccgaccccagtttgcagtaagaaagaacatggcgatctctctagctcactgtccctgattcctttcgttccggagaagaaagaagactgcaaggaggggacgacggcgagtggtctggtgggcaacgttaacgatactagtgatatgtggacggattttgagtcgccggagtttgtgttcccggatttagggattgaacagtcaccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

1371

Amino Acids

155.4

Weight (kDa)

5.75

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1689
Acc16I TGCGCA 2 cut(s) 821, 2684
Acc36I ACCTGC 1 cut(s) 2716
AccB1I GGYRCC 2 cut(s) 310, 767
AccBSI CCGCTC 1 cut(s) 3155
AccI GTMKAC 4 cut(s) 290, 1147, 1195, 2038
AccIII TCCGGA 2 cut(s) 2332, 3976
AclI AACGTT 1 cut(s) 4032
AcoI YGGCCR 1 cut(s) 3905
AcsI RAATTY 6 cut(s) 1248, 1359, 1940, 2226, 2419, 3462
AcuI CTGAAG 7 cut(s) 168, 465, 1063, 1662, 2013, 2264, 3736
AcvI CACGTG 2 cut(s) 1768, 3858
AdeI CACNNNGTG 2 cut(s) 307, 1004
AfaI GTAC 8 cut(s) 1404, 2355, 2438, 2907, 3054, 3194, 3760, 3830
AfeI AGCGCT 1 cut(s) 2067
AflIII ACRYGT 4 cut(s) 48, 1765, 2738, 3855
AhlI ACTAGT 3 cut(s) 2014, 3805, 4043
AjiI CACGTC 3 cut(s) 49, 1549, 2741
AjnI CCWGG 7 cut(s) 203, 303, 658, 1513, 2952, 2995, 3723
AjuI GAANNNNNNNTTGG 2 cut(s) 918, 950
AleI CACNNNNGTG 2 cut(s) 1770, 2955
AloI GAACNNNNNNTCC 4 cut(s) 3245, 3277, 4067, 4099
Alw21I GWGCWC 3 cut(s) 1420, 2387, 2864
Alw26I GTCTC 6 cut(s) 21, 2148, 2234, 2758, 2994, 3567
Aor13HI TCCGGA 2 cut(s) 2332, 3976
Aor51HI AGCGCT 1 cut(s) 2067
AoxI GGCC 6 cut(s) 94, 1855, 2593, 3339, 3602, 3905
ApeKI GCWGC 6 cut(s) 5, 943, 2127, 2169, 2680, 3576
ApoI RAATTY 6 cut(s) 1248, 1359, 1940, 2226, 2419, 3462
ArsI GACNNNNNNTTYG 2 cut(s) 3631, 3663
Asp700I GAANNNNTTC 5 cut(s) 417, 789, 1305, 2229, 2277
AspLEI GCGC 4 cut(s) 822, 1524, 2068, 2685
AspS9I GGNCC 3 cut(s) 538, 1856, 2215
AsuC2I CCSGG 2 cut(s) 3606, 4088
AsuHPI GGTGA 7 cut(s) 632, 1058, 2942, 2969, 3455, 3599, 4101
AvaII GGWCC 2 cut(s) 538, 2215
BaeGI GKGCMC 1 cut(s) 315
BamHI GGATCC 2 cut(s) 1285, 3038
BanI GGYRCC 2 cut(s) 310, 767
BanII GRGCYC 1 cut(s) 1420
BauI CACGAG 1 cut(s) 1794
BbrPI CACGTG 2 cut(s) 1768, 3858
BbsI GAAGAC 4 cut(s) 204, 1551, 2321, 3996
Bbv12I GWGCWC 3 cut(s) 1420, 2387, 2864
BbvI GCAGC 5 cut(s) 955, 2139, 2156, 2667, 3588
BccI CCATC 9 cut(s) 105, 1037, 1178, 1852, 2513, 2636, 2797, 3479, 3680
BceAI ACGGC 5 cut(s) 204, 1590, 2291, 2715, 4026
BciT130I CCWGG 7 cut(s) 205, 305, 660, 1515, 2954, 2997, 3725
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 3 cut(s) 718, 3772, 3876
BcnI CCSGG 2 cut(s) 3606, 4088
BcoDI GTCTC 6 cut(s) 21, 2148, 2234, 2758, 2994, 3567
BcuI ACTAGT 3 cut(s) 2014, 3805, 4043
BfmI CTRYAG 3 cut(s) 1128, 1578, 2311
BfoI RGCGCY 1 cut(s) 2069
BfuAI ACCTGC 1 cut(s) 2716
BfuI GTATCC 1 cut(s) 67
BglII AGATCT 3 cut(s) 84, 151, 2365
BisI GCNGC 6 cut(s) 6, 944, 2128, 2170, 2681, 3577
BlsI GCNGC 6 cut(s) 7, 945, 2129, 2171, 2682, 3578
BmcAI AGTACT 1 cut(s) 1404
Bme1390I CCNGG 9 cut(s) 205, 305, 660, 1515, 2954, 2997, 3606, 3725, 4088
Bme18I GGWCC 2 cut(s) 538, 2215
BmgBI CACGTC 3 cut(s) 49, 1549, 2741
BmgT120I GGNCC 3 cut(s) 538, 1856, 2215
BmiI GGNNCC 7 cut(s) 312, 769, 847, 1287, 3040, 3628, 3886
BmrFI CCNGG 9 cut(s) 205, 305, 660, 1515, 2954, 2997, 3606, 3725, 4088
BmrI ACTGGG 1 cut(s) 3908
BmsI GCATC 8 cut(s) 481, 1627, 1814, 2090, 2800, 3127, 3149, 3420
BmuI ACTGGG 1 cut(s) 3908
BpiI GAAGAC 4 cut(s) 204, 1551, 2321, 3996
BplI GAGNNNNNCTC 2 cut(s) 2246, 2278
BpmI CTGGAG 2 cut(s) 187, 3549
BpuEI CTTGAG 5 cut(s) 1102, 1125, 1822, 2132, 3230
BpuMI CCSGG 2 cut(s) 3606, 4088
BsaAI YACGTR 4 cut(s) 1199, 1409, 1768, 3858
BsaJI CCNNGG 6 cut(s) 616, 1514, 2953, 3278, 3724, 3740
BsaWI WCCGGW 2 cut(s) 2332, 3976
BsaXI ACNNNNNCTCC 2 cut(s) 4067, 4097
Bse118I RCCGGY 1 cut(s) 3584
Bse1I ACTGG 5 cut(s) 270, 282, 1287, 2907, 3914
Bse3DI GCAATG 4 cut(s) 588, 678, 1314, 3406
BseAI TCCGGA 2 cut(s) 2332, 3976
BseBI CCWGG 7 cut(s) 205, 305, 660, 1515, 2954, 2997, 3725
BseDI CCNNGG 6 cut(s) 616, 1514, 2953, 3278, 3724, 3740
BseGI GGATG 9 cut(s) 493, 543, 1829, 1844, 2054, 2105, 2528, 2647, 3507
BseMI GCAATG 4 cut(s) 588, 678, 1314, 3406
BseMII CTCAG 6 cut(s) 860, 1015, 2397, 3143, 3276, 3327
BseNI ACTGG 5 cut(s) 270, 282, 1287, 2907, 3914
BseRI GAGGAG 2 cut(s) 3470, 3572
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 5 cut(s) 955, 2139, 2156, 2667, 3588
BseYI CCCAGC 1 cut(s) 2123
BshFI GGCC 6 cut(s) 96, 1857, 2595, 3341, 3604, 3907
BshNI GGYRCC 2 cut(s) 310, 767
BsiHKAI GWGCWC 3 cut(s) 1420, 2387, 2864
BsiSI CCGG 6 cut(s) 2333, 3585, 3605, 3977, 4073, 4088
BslFI GGGAC 4 cut(s) 1011, 3403, 3943, 4018
BsmAI GTCTC 6 cut(s) 21, 2148, 2234, 2758, 2994, 3567
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 4 cut(s) 1011, 3403, 3943, 4018
BsmI GAATGC 4 cut(s) 134, 287, 660, 946
BsnI GGCC 6 cut(s) 96, 1857, 2595, 3341, 3604, 3907
Bsp1286I GDGCHC 4 cut(s) 315, 1420, 2387, 2864
Bsp13I TCCGGA 2 cut(s) 2332, 3976
Bsp1407I TGTACA 1 cut(s) 3052
Bsp19I CCATGG 1 cut(s) 3278
BspANI GGCC 6 cut(s) 96, 1857, 2595, 3341, 3604, 3907
BspCNI CTCAG 6 cut(s) 861, 1014, 2398, 3142, 3277, 3328
BspEI TCCGGA 2 cut(s) 2332, 3976
BspHI TCATGA 1 cut(s) 2815
BspLI GGNNCC 7 cut(s) 312, 769, 847, 1287, 3040, 3628, 3886
BspMI ACCTGC 1 cut(s) 2716
BspT107I GGYRCC 2 cut(s) 310, 767
BsrBI CCGCTC 1 cut(s) 3155
BsrDI GCAATG 4 cut(s) 588, 678, 1314, 3406
BsrFI RCCGGY 1 cut(s) 3584
BsrGI TGTACA 1 cut(s) 3052
BsrI ACTGG 5 cut(s) 270, 282, 1287, 2907, 3914
BssAI RCCGGY 1 cut(s) 3584
BssECI CCNNGG 6 cut(s) 616, 1514, 2953, 3278, 3724, 3740
BssNAI GTATAC 1 cut(s) 1196
BssSI CACGAG 1 cut(s) 1794
BssT1I CCWWGG 3 cut(s) 616, 3278, 3740
Bst1107I GTATAC 1 cut(s) 1196
Bst2BI CACGAG 1 cut(s) 1794
Bst2UI CCWGG 7 cut(s) 205, 305, 660, 1515, 2954, 2997, 3725
Bst6I CTCTTC 5 cut(s) 921, 2247, 2997, 3297, 3593
BstAUI TGTACA 1 cut(s) 3052
BstBAI YACGTR 4 cut(s) 1199, 1409, 1768, 3858
BstC8I GCNNGC 4 cut(s) 818, 1125, 2597, 2758
BstDSI CCRYGG 1 cut(s) 3278
BstEII GGTNACC 1 cut(s) 2703
BstENI CCTNNNNNAGG 2 cut(s) 620, 663
BstF5I GGATG 9 cut(s) 493, 543, 1829, 1844, 2054, 2105, 2528, 2647, 3507
BstH2I RGCGCY 1 cut(s) 2069
BstHHI GCGC 4 cut(s) 822, 1524, 2068, 2685
BstMAI GTCTC 6 cut(s) 21, 2148, 2234, 2758, 2994, 3567
BstMWI GCNNNNNNNGC 7 cut(s) 131, 828, 1453, 1519, 1583, 2284, 3104
BstNI CCWGG 7 cut(s) 205, 305, 660, 1515, 2954, 2997, 3725
BstNSI RCATGY 3 cut(s) 289, 1323, 1885
BstPI GGTNACC 1 cut(s) 2703
BstSCI CCNGG 9 cut(s) 203, 303, 658, 1513, 2952, 2995, 3604, 3723, 4086
BstSFI CTRYAG 3 cut(s) 1128, 1578, 2311
BstSLI GKGCMC 1 cut(s) 315
BstV1I GCAGC 5 cut(s) 955, 2139, 2156, 2667, 3588
BstV2I GAAGAC 4 cut(s) 204, 1551, 2321, 3996
BstX2I RGATCY 7 cut(s) 84, 151, 331, 1285, 1873, 2365, 3038
BstXI CCANNNNNNTGG 1 cut(s) 3657
BstYI RGATCY 7 cut(s) 84, 151, 331, 1285, 1873, 2365, 3038
BstZ17I GTATAC 1 cut(s) 1196
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 6 cut(s) 96, 1857, 2595, 3341, 3604, 3907
BtgI CCRYGG 1 cut(s) 3278
BtgZI GCGATG 1 cut(s) 1056
BtrI CACGTC 3 cut(s) 49, 1549, 2741
BtsCI GGATG 9 cut(s) 493, 543, 1829, 1844, 2054, 2105, 2528, 2647, 3507
BtsIMutI CAGTG 6 cut(s) 1009, 1396, 1989, 3333, 3669, 3953
BveI ACCTGC 1 cut(s) 2716
Cac8I GCNNGC 4 cut(s) 818, 1125, 2597, 2758
CciI TCATGA 1 cut(s) 2815
CfoI GCGC 4 cut(s) 822, 1524, 2068, 2685
Cfr10I RCCGGY 1 cut(s) 3584
Cfr13I GGNCC 3 cut(s) 538, 1856, 2215
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 8 cut(s) 1403, 2354, 2437, 2906, 3053, 3193, 3759, 3829
CspCI CAANNNNNGTGG 2 cut(s) 1986, 2021
CviQI GTAC 8 cut(s) 1403, 2354, 2437, 2906, 3053, 3193, 3759, 3829
DraIII CACNNNGTG 2 cut(s) 307, 1004
EaeI YGGCCR 1 cut(s) 3905
Eam1104I CTCTTC 5 cut(s) 921, 2247, 2997, 3297, 3593
EarI CTCTTC 5 cut(s) 921, 2247, 2997, 3297, 3593
EciI GGCGGA 1 cut(s) 1481
Ecl136II GAGCTC 1 cut(s) 1418
Eco130I CCWWGG 3 cut(s) 616, 3278, 3740
Eco24I GRGCYC 1 cut(s) 1420
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 2 cut(s) 538, 2215
Eco47III AGCGCT 1 cut(s) 2067
Eco53kI GAGCTC 1 cut(s) 1418
Eco57I CTGAAG 7 cut(s) 168, 465, 1063, 1662, 2013, 2264, 3736
Eco72I CACGTG 2 cut(s) 1768, 3858
Eco91I GGTNACC 1 cut(s) 2703
EcoICRI GAGCTC 1 cut(s) 1418
EcoNI CCTNNNNNAGG 2 cut(s) 620, 663
EcoO109I RGGNCCY 1 cut(s) 2215
EcoO65I GGTNACC 1 cut(s) 2703
EcoRII CCWGG 7 cut(s) 203, 303, 658, 1513, 2952, 2995, 3723
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 3 cut(s) 616, 3278, 3740
EcoT22I ATGCAT 3 cut(s) 287, 1458, 3142
EcoT38I GRGCYC 1 cut(s) 1420
ErhI CCWWGG 3 cut(s) 616, 3278, 3740
Esp3I CGTCTC 1 cut(s) 21
FalI AAGNNNNNCTT 6 cut(s) 239, 271, 873, 905, 918, 950
FaqI GGGAC 4 cut(s) 1011, 3403, 3943, 4018
FauI CCCGC 3 cut(s) 953, 1245, 3770
FauNDI CATATG 5 cut(s) 423, 777, 1435, 3258, 3271
FbaI TGATCA 3 cut(s) 718, 3772, 3876
FblI GTMKAC 4 cut(s) 290, 1147, 1195, 2038
Fnu4HI GCNGC 6 cut(s) 6, 944, 2128, 2170, 2681, 3577
FokI GGATG 9 cut(s) 500, 530, 1831, 1836, 2041, 2112, 2535, 2654, 3494
FriOI GRGCYC 1 cut(s) 1420
Fsp4HI GCNGC 6 cut(s) 6, 944, 2128, 2170, 2681, 3577
FspI TGCGCA 2 cut(s) 821, 2684
GlaI GCGC 4 cut(s) 821, 1523, 2067, 2684
GluI GCNGC 6 cut(s) 6, 944, 2128, 2170, 2681, 3577
GsaI CCCAGC 1 cut(s) 2127
GsuI CTGGAG 2 cut(s) 187, 3549
HaeII RGCGCY 1 cut(s) 2069
HaeIII GGCC 6 cut(s) 96, 1857, 2595, 3341, 3604, 3907
HapII CCGG 6 cut(s) 2333, 3585, 3605, 3977, 4073, 4088
HhaI GCGC 4 cut(s) 822, 1524, 2068, 2685
Hin6I GCGC 4 cut(s) 820, 1522, 2066, 2683
HinP1I GCGC 4 cut(s) 820, 1522, 2066, 2683
HincII GTYRAC 3 cut(s) 1630, 2050, 4036
HindII GTYRAC 3 cut(s) 1630, 2050, 4036
HindIII AAGCTT 4 cut(s) 497, 1270, 1644, 2754
HpaI GTTAAC 2 cut(s) 2050, 4036
HpaII CCGG 6 cut(s) 2333, 3585, 3605, 3977, 4073, 4088
HphI GGTGA 7 cut(s) 632, 1058, 2942, 2969, 3455, 3599, 4101
Hpy99I CGWCG 1 cut(s) 4012
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 828, 1453, 1519, 1583, 2284, 3104
HspAI GCGC 4 cut(s) 820, 1522, 2066, 2683
Kpn2I TCCGGA 2 cut(s) 2332, 3976
Ksp22I TGATCA 3 cut(s) 718, 3772, 3876
KspAI GTTAAC 2 cut(s) 2050, 4036
LmnI GCTCC 4 cut(s) 1172, 1729, 3457, 3884
Lsp1109I GCAGC 5 cut(s) 955, 2139, 2156, 2667, 3588
LweI GCATC 8 cut(s) 481, 1627, 1814, 2090, 2800, 3127, 3149, 3420
MabI ACCWGGT 1 cut(s) 303
MaeIII GTNAC 9 cut(s) 563, 930, 976, 1734, 1796, 2615, 2703, 3503, 4107
MbiI CCGCTC 1 cut(s) 3155
MfeI CAATTG 2 cut(s) 2268, 2565
MflI RGATCY 7 cut(s) 84, 151, 331, 1285, 1873, 2365, 3038
MhlI GDGCHC 4 cut(s) 315, 1420, 2387, 2864
MlyI GAGTC 9 cut(s) 137, 194, 575, 1963, 3569, 3655, 3662, 3807, 4076
MmeI TCCRAC 8 cut(s) 17, 553, 622, 2923, 3231, 3534, 3654, 3826
Mph1103I ATGCAT 3 cut(s) 287, 1458, 3142
MroI TCCGGA 2 cut(s) 2332, 3976
MroXI GAANNNNTTC 5 cut(s) 417, 789, 1305, 2229, 2277
MslI CAYNNNNRTG 7 cut(s) 390, 765, 776, 1770, 2512, 2955, 3872
MspA1I CMGCKG 2 cut(s) 3501, 3569
MspI CCGG 6 cut(s) 2333, 3585, 3605, 3977, 4073, 4088
MspR9I CCNGG 9 cut(s) 205, 305, 660, 1515, 2954, 2997, 3606, 3725, 4088
MunI CAATTG 2 cut(s) 2268, 2565
Mva1269I GAATGC 4 cut(s) 134, 287, 660, 946
MvaI CCWGG 7 cut(s) 205, 305, 660, 1515, 2954, 2997, 3725
MwoI GCNNNNNNNGC 7 cut(s) 131, 828, 1453, 1519, 1583, 2284, 3104
NciI CCSGG 2 cut(s) 3606, 4088
NcoI CCATGG 1 cut(s) 3278
NdeI CATATG 5 cut(s) 423, 777, 1435, 3258, 3271
NlaIV GGNNCC 7 cut(s) 312, 769, 847, 1287, 3040, 3628, 3886
NmuCI GTSAC 4 cut(s) 1796, 2615, 3503, 4107
NsbI TGCGCA 2 cut(s) 821, 2684
NsiI ATGCAT 3 cut(s) 287, 1458, 3142
NspI RCATGY 3 cut(s) 289, 1323, 1885
OliI CACNNNNGTG 2 cut(s) 1770, 2955
PagI TCATGA 1 cut(s) 2815
PctI GAATGC 4 cut(s) 134, 287, 660, 946
PdmI GAANNNNTTC 5 cut(s) 417, 789, 1305, 2229, 2277
PfoI TCCNGGA 2 cut(s) 2995, 4086
PkrI GCNGC 6 cut(s) 7, 945, 2129, 2171, 2682, 3578
PleI GAGTC 9 cut(s) 137, 194, 575, 1962, 3568, 3654, 3661, 3806, 4075
PmaCI CACGTG 2 cut(s) 1768, 3858
PmlI CACGTG 2 cut(s) 1768, 3858
PpsI GAGTC 9 cut(s) 137, 194, 575, 1962, 3568, 3654, 3661, 3806, 4075
Ppu21I YACGTR 4 cut(s) 1199, 1409, 1768, 3858
PpuMI RGGWCCY 1 cut(s) 2215
PsiI TTATAA 1 cut(s) 1689
Psp124BI GAGCTC 1 cut(s) 1420
Psp1406I AACGTT 1 cut(s) 4032
Psp5II RGGWCCY 1 cut(s) 2215
Psp6I CCWGG 7 cut(s) 203, 303, 658, 1513, 2952, 2995, 3723
PspCI CACGTG 2 cut(s) 1768, 3858
PspEI GGTNACC 1 cut(s) 2703
PspFI CCCAGC 1 cut(s) 2123
PspGI CCWGG 7 cut(s) 203, 303, 658, 1513, 2952, 2995, 3723
PspN4I GGNNCC 7 cut(s) 312, 769, 847, 1287, 3040, 3628, 3886
PspPI GGNCC 3 cut(s) 538, 1856, 2215
PspPPI RGGWCCY 1 cut(s) 2215
PsuI RGATCY 7 cut(s) 84, 151, 331, 1285, 1873, 2365, 3038
PvuII CAGCTG 1 cut(s) 3501
RsaI GTAC 8 cut(s) 1404, 2355, 2438, 2907, 3054, 3194, 3760, 3830
RsaNI GTAC 8 cut(s) 1403, 2354, 2437, 2906, 3053, 3193, 3759, 3829
RseI CAYNNNNRTG 7 cut(s) 390, 765, 776, 1770, 2512, 2955, 3872
SacI GAGCTC 1 cut(s) 1420
SatI GCNGC 6 cut(s) 6, 944, 2128, 2170, 2681, 3577
Sau96I GGNCC 3 cut(s) 538, 1856, 2215
ScaI AGTACT 1 cut(s) 1404
SchI GAGTC 9 cut(s) 137, 194, 575, 1963, 3569, 3655, 3662, 3807, 4076
ScrFI CCNGG 9 cut(s) 205, 305, 660, 1515, 2954, 2997, 3606, 3725, 4088
SduI GDGCHC 4 cut(s) 315, 1420, 2387, 2864
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 8 cut(s) 481, 1627, 1814, 2090, 2800, 3127, 3149, 3420
SfcI CTRYAG 3 cut(s) 1128, 1578, 2311
SinI GGWCC 2 cut(s) 538, 2215
SmiMI CAYNNNNRTG 7 cut(s) 390, 765, 776, 1770, 2512, 2955, 3872
SmlI CTYRAG 5 cut(s) 1117, 1140, 1801, 2111, 3245
SmoI CTYRAG 5 cut(s) 1117, 1140, 1801, 2111, 3245
SpeI ACTAGT 3 cut(s) 2014, 3805, 4043
SstI GAGCTC 1 cut(s) 1420
StyD4I CCNGG 9 cut(s) 203, 303, 658, 1513, 2952, 2995, 3604, 3723, 4086
StyI CCWWGG 3 cut(s) 616, 3278, 3740
TaqI TCGA 3 cut(s) 212, 1613, 2965
TatI WGTACW 3 cut(s) 1402, 3052, 3192
TscAI CASTG 6 cut(s) 1009, 1396, 1996, 3340, 3669, 3960
TseFI GTSAC 4 cut(s) 1796, 2615, 3503, 4107
TseI GCWGC 6 cut(s) 5, 943, 2127, 2169, 2680, 3576
Tsp45I GTSAC 4 cut(s) 1796, 2615, 3503, 4107
TspGWI ACGGA 4 cut(s) 372, 1293, 2315, 4073
TspRI CASTG 6 cut(s) 1009, 1396, 1996, 3340, 3669, 3960
VpaK11BI GGWCC 2 cut(s) 538, 2215
XagI CCTNNNNNAGG 2 cut(s) 620, 663
XapI RAATTY 6 cut(s) 1248, 1359, 1940, 2226, 2419, 3462
XbaI TCTAGA 1 cut(s) 1309
XceI RCATGY 3 cut(s) 289, 1323, 1885
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmiI GTMKAC 4 cut(s) 290, 1147, 1195, 2038
XmnI GAANNNNTTC 5 cut(s) 417, 789, 1305, 2229, 2277
ZrmI AGTACT 1 cut(s) 1404
Zsp2I ATGCAT 3 cut(s) 287, 1458, 3142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.