pycom07g23670

Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
24517267 .. 24518003
737 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23670.2

Sequence Viewer

Length: 474 bp
ATGGGTTGGGAAATCGTCCGCCAAGAATCTATCGAAGAGCCTAGGAGACGAAGTAGATTGTGGAGTTATGAAGATGTTCATCATGTGCTAACTCAAAATACGGCTACAAAAGCAGTTGAAAGCATAATCCTGGATTTGTCGTGCTCAGATGGGGTATGCTTAAGTGCTGAAGCTTCTGTTAGTATGACTCAACTAAGACTTCTCAATATCAGTCATAAGGACCCCATTTTTGAACATGATTACTGCAAACACCACCTGATTGGGCACTTCAAGTTACTTGAGTTGAGGTGTCTTTCCTGGCTTAAATGCCCTCTTAAGTCTTTGCCATCCAACTTTCAATTCAAAAATCTTGTTGAACTTGATATGCAAAATAGTCTCATTGACCGACTTTGGGAAGGAACCCAGGTACGTACAATCATTTACATGTATATGTTTCTTCTAAATGTTTGGGTTCTAAGTTGTCTTATTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

18.45

Weight (kDa)

6.64

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 2 cut(s) 408, 412
AfiI CCNNNNNNNGG 1 cut(s) 391
AflII CTTAAG 2 cut(s) 160, 314
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 6 cut(s) 119, 233, 271, 338, 343, 356
AjnI CCWGG 3 cut(s) 129, 296, 402
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 2 cut(s) 40, 380
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
Asp700I GAANNNNTTC 1 cut(s) 75
AspA2I CCTAGG 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
AvrII CCTAGG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 146
BccI CCATC 2 cut(s) 143, 334
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 3 cut(s) 131, 298, 404
BcoDI GTCTC 2 cut(s) 40, 380
BfaI CTAG 1 cut(s) 42
BfrI CTTAAG 2 cut(s) 160, 314
BlnI CCTAGG 1 cut(s) 41
Bme1390I CCNGG 3 cut(s) 131, 298, 404
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 222, 400
BmrFI CCNGG 3 cut(s) 131, 298, 404
BpuEI CTTGAG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 410
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 41, 402
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 3 cut(s) 131, 298, 404
BseDI CCNNGG 2 cut(s) 41, 402
BseGI GGATG 1 cut(s) 326
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 2 cut(s) 40, 380
BsmBI CGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 146, 267
BspACI CCGC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 222, 400
BspQI GCTCTTC 1 cut(s) 30
BspTI CTTAAG 2 cut(s) 160, 314
BssECI CCNNGG 2 cut(s) 41, 402
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 3 cut(s) 131, 298, 404
Bst6I CTCTTC 1 cut(s) 30
BstAFI CTTAAG 2 cut(s) 160, 314
BstBAI YACGTR 1 cut(s) 410
BstDEI CTNAG 3 cut(s) 145, 194, 455
BstF5I GGATG 1 cut(s) 326
BstMAI GTCTC 2 cut(s) 40, 380
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 3 cut(s) 131, 298, 404
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 129, 296, 402
BstSLI GKGCMC 1 cut(s) 267
BstSNI TACGTA 1 cut(s) 410
BstXI CCANNNNNNTGG 1 cut(s) 260
BtsCI GGATG 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 2 cut(s) 407, 411
CviAII CATG 3 cut(s) 83, 236, 424
CviJI RGCY 4 cut(s) 40, 104, 173, 301
CviKI_1 RGCY 4 cut(s) 40, 104, 173, 301
CviQI GTAC 2 cut(s) 407, 411
DdeI CTNAG 3 cut(s) 145, 194, 455
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 8
Eco105I TACGTA 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 3 cut(s) 129, 296, 402
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 3 cut(s) 86, 239, 427
FatI CATG 3 cut(s) 82, 235, 423
FokI GGATG 1 cut(s) 313
FspBI CTAG 1 cut(s) 42
Hin1II CATG 3 cut(s) 86, 239, 427
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 2 cut(s) 26, 187
Hpy188I TCNGA 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 246, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 145, 194, 455
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 3 cut(s) 86, 239, 427
LguI GCTCTTC 1 cut(s) 30
LpnPI CCDG 7 cut(s) 116, 143, 269, 283, 310, 389, 416
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 273
MboII GAAGA 3 cut(s) 47, 83, 428
MhlI GDGCHC 2 cut(s) 146, 267
MluCI AATT 1 cut(s) 338
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 2 cut(s) 279, 321
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 4 cut(s) 161, 303, 315, 468
MslI CAYNNNNRTG 2 cut(s) 422, 428
MspCI CTTAAG 2 cut(s) 160, 314
MspR9I CCNGG 3 cut(s) 131, 298, 404
MvaI CCWGG 3 cut(s) 131, 298, 404
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 3 cut(s) 86, 239, 427
NlaIV GGNNCC 2 cut(s) 222, 400
NspI RCATGY 1 cut(s) 427
PciI ACATGT 1 cut(s) 423
PciSI GCTCTTC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 129
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 410
PpuMI RGGWCCY 1 cut(s) 220
PscI ACATGT 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 3 cut(s) 129, 296, 402
PspGI CCWGG 3 cut(s) 129, 296, 402
PspN4I GGNNCC 2 cut(s) 222, 400
PspPI GGNCC 1 cut(s) 220
PspPPI RGGWCCY 1 cut(s) 220
RsaI GTAC 2 cut(s) 408, 412
RsaNI GTAC 2 cut(s) 407, 411
RseI CAYNNNNRTG 2 cut(s) 422, 428
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 4 cut(s) 161, 303, 315, 468
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 3 cut(s) 131, 298, 404
SduI GDGCHC 2 cut(s) 146, 267
SetI ASST 5 cut(s) 175, 258, 290, 408, 412
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 2 cut(s) 422, 428
SmlI CTYRAG 3 cut(s) 160, 278, 314
SmoI CTYRAG 3 cut(s) 160, 278, 314
SnaBI TACGTA 1 cut(s) 410
Sse9I AATT 1 cut(s) 338
SsiI CCGC 1 cut(s) 19
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 129, 296, 402
StyI CCWWGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 412
TaqI TCGA 1 cut(s) 33
TaqII GACCGA 1 cut(s) 399
TasI AATT 1 cut(s) 338
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 4 cut(s) 161, 303, 315, 468
Tru9I TTAA 4 cut(s) 161, 303, 315, 468
TspDTI ATGAA 2 cut(s) 68, 84
Vha464I CTTAAG 2 cut(s) 160, 314
VpaK11BI GGWCC 1 cut(s) 220
XceI RCATGY 1 cut(s) 427
XmaJI CCTAGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.