TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PH_12 | PF16457 | 23 - 125 | 1.2e-07 | Pleckstrin homology domain |
| WD40_RLD | PF25390 | 265 - 648 | 3e-81 | RCC1-like domain |
| RCC1_2 | PF13540 | 309 - 332 | 2.5e-06 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 325 - 374 | 6.8e-10 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1_2 | PF13540 | 364 - 387 | 4.1e-06 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 377 - 429 | 9.8e-08 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1_2 | PF13540 | 416 - 444 | 8.3e-06 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 433 - 481 | 4.5e-14 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 496 - 545 | 3.8e-14 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 549 - 597 | 3.1e-07 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 602 - 649 | 4.7e-14 | Regulator of chromosome condensation (RCC1) repeat |
| FYVE | PF01363 | 653 - 719 | 2.2e-14 | FYVE zinc finger |
| BRX_N | PF13713 | 893 - 926 | 1e-13 | Transcription factor BRX N-terminal domain |
| BRX_assoc | PF16627 | 933 - 997 | 3.5e-09 | Unstructured region between BRX_N and BRX domain |
| BRX | PF08381 | 1007 - 1061 | 1.9e-28 | Transcription factor regulating root and shoot growth via Pin3 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1904, 2463 |
| AccB1I | GGYRCC | 1 cut(s) | 2101 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2378 |
| AccI | GTMKAC | 1 cut(s) | 1525 |
| AccII | CGCG | 1 cut(s) | 381 |
| AciI | CCGC | 7 cut(s) | 32, 381, 1717, 2190, 3103, 3118, 3152 |
| AclWI | GGATC | 7 cut(s) | 1356, 1468, 1684, 1697, 2389, 2425, 2513 |
| AcoI | YGGCCR | 3 cut(s) | 60, 226, 1645 |
| AcsI | RAATTY | 6 cut(s) | 122, 1085, 1239, 1744, 1865, 2959 |
| AcuI | CTGAAG | 8 cut(s) | 116, 363, 450, 612, 1236, 1824, 2970, 3091 |
| AdeI | CACNNNGTG | 1 cut(s) | 2474 |
| AfaI | GTAC | 7 cut(s) | 170, 891, 918, 1106, 1159, 1402, 3182 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 975, 1179, 1235, 1676, 1726, 2378, 2653, 3015 |
| AflIII | ACRYGT | 1 cut(s) | 2786 |
| AhlI | ACTAGT | 1 cut(s) | 437 |
| AjiI | CACGTC | 1 cut(s) | 2789 |
| AjnI | CCWGG | 5 cut(s) | 223, 2413, 2895, 3043, 3060 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2314, 2346, 2381, 2413 |
| AleI | CACNNNNGTG | 1 cut(s) | 2951 |
| Alw21I | GWGCWC | 2 cut(s) | 479, 2584 |
| Alw26I | GTCTC | 7 cut(s) | 214, 660, 1070, 1252, 1890, 1969, 2449 |
| AlwI | GGATC | 7 cut(s) | 1356, 1468, 1684, 1697, 2389, 2425, 2513 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 635, 658, 1479 |
| Ama87I | CYCGRG | 1 cut(s) | 2433 |
| AoxI | GGCC | 8 cut(s) | 34, 60, 226, 260, 382, 1393, 1645, 2160 |
| ApaI | GGGCCC | 1 cut(s) | 38 |
| ApeKI | GCWGC | 8 cut(s) | 539, 542, 956, 1436, 1574, 1940, 2699, 2778 |
| ApoI | RAATTY | 6 cut(s) | 122, 1085, 1239, 1744, 1865, 2959 |
| AseI | ATTAAT | 1 cut(s) | 371 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 156, 525, 2428 |
| AspLEI | GCGC | 3 cut(s) | 604, 1633, 2340 |
| AspS9I | GGNCC | 5 cut(s) | 34, 35, 1207, 1226, 1265 |
| AsuHPI | GGTGA | 9 cut(s) | 506, 791, 833, 1007, 1145, 1328, 1550, 1863, 2436 |
| AvaI | CYCGRG | 1 cut(s) | 2433 |
| AvaII | GGWCC | 3 cut(s) | 1207, 1226, 1265 |
| BaeGI | GKGCMC | 2 cut(s) | 38, 1563 |
| BalI | TGGCCA | 3 cut(s) | 62, 228, 1647 |
| BamHI | GGATCC | 1 cut(s) | 1689 |
| BanI | GGYRCC | 1 cut(s) | 2101 |
| BanII | GRGCYC | 3 cut(s) | 38, 479, 2584 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2920, 2952 |
| BauI | CACGAG | 1 cut(s) | 2472 |
| BbsI | GAAGAC | 2 cut(s) | 955, 1943 |
| Bbv12I | GWGCWC | 2 cut(s) | 479, 2584 |
| BbvI | GCAGC | 8 cut(s) | 526, 554, 943, 1448, 1561, 1952, 2711, 2790 |
| BccI | CCATC | 7 cut(s) | 71, 671, 1313, 1505, 1697, 1952, 2092 |
| BceAI | ACGGC | 3 cut(s) | 1265, 1704, 2325 |
| BciT130I | CCWGG | 5 cut(s) | 225, 2415, 2897, 3045, 3062 |
| BciVI | GTATCC | 2 cut(s) | 264, 1846 |
| BcoDI | GTCTC | 7 cut(s) | 214, 660, 1070, 1252, 1890, 1969, 2449 |
| BcuI | ACTAGT | 1 cut(s) | 437 |
| BfmI | CTRYAG | 3 cut(s) | 540, 1434, 2829 |
| BfoI | RGCGCY | 1 cut(s) | 2341 |
| BfuI | GTATCC | 2 cut(s) | 264, 1846 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 23 |
| BglII | AGATCT | 2 cut(s) | 2593, 3088 |
| BmcAI | AGTACT | 1 cut(s) | 1159 |
| Bme1390I | CCNGG | 5 cut(s) | 225, 2415, 2897, 3045, 3062 |
| Bme18I | GGWCC | 3 cut(s) | 1207, 1226, 1265 |
| BmeT110I | CYCGRG | 1 cut(s) | 2433 |
| BmgBI | CACGTC | 1 cut(s) | 2789 |
| BmgT120I | GGNCC | 5 cut(s) | 34, 35, 1207, 1226, 1265 |
| BmiI | GGNNCC | 8 cut(s) | 36, 522, 1208, 1209, 1368, 1691, 2103, 2188 |
| BmrFI | CCNGG | 5 cut(s) | 225, 2415, 2897, 3045, 3062 |
| BmrI | ACTGGG | 1 cut(s) | 2366 |
| BmsI | GCATC | 6 cut(s) | 577, 703, 772, 1021, 2894, 2921 |
| BmuI | ACTGGG | 1 cut(s) | 2366 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2787 |
| BpiI | GAAGAC | 2 cut(s) | 955, 1943 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 999, 1031 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2583 |
| BpuEI | CTTGAG | 3 cut(s) | 1680, 2072, 3077 |
| BsaI | GGTCTC | 2 cut(s) | 1070, 1969 |
| BsaJI | CCNNGG | 5 cut(s) | 257, 1177, 1268, 1370, 3060 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 975, 1179, 1235, 1676, 1726, 2378, 2653, 3015 |
| Bse1I | ACTGG | 4 cut(s) | 361, 1648, 2266, 2372 |
| Bse3DI | GCAATG | 1 cut(s) | 2510 |
| BseBI | CCWGG | 5 cut(s) | 225, 2415, 2897, 3045, 3062 |
| BseDI | CCNNGG | 5 cut(s) | 257, 1177, 1268, 1370, 3060 |
| BseGI | GGATG | 7 cut(s) | 15, 517, 529, 718, 799, 2267, 3025 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 975, 1179, 1235, 1676, 1726, 2378, 2653, 3015 |
| BseMI | GCAATG | 1 cut(s) | 2510 |
| BseMII | CTCAG | 9 cut(s) | 186, 255, 687, 2167, 2222, 2325, 2415, 2514, 2597 |
| BseNI | ACTGG | 4 cut(s) | 361, 1648, 2266, 2372 |
| BseSI | GKGCMC | 2 cut(s) | 38, 1563 |
| BseXI | GCAGC | 8 cut(s) | 526, 554, 943, 1448, 1561, 1952, 2711, 2790 |
| BsgI | GTGCAG | 3 cut(s) | 723, 759, 1137 |
| Bsh1236I | CGCG | 1 cut(s) | 381 |
| BshFI | GGCC | 8 cut(s) | 36, 62, 228, 262, 384, 1395, 1647, 2162 |
| BshNI | GGYRCC | 1 cut(s) | 2101 |
| BsiHKAI | GWGCWC | 2 cut(s) | 479, 2584 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2433 |
| BslFI | GGGAC | 6 cut(s) | 62, 1193, 1369, 2368, 2554, 2779 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 975, 1179, 1235, 1676, 1726, 2378, 2653, 3015 |
| BsmAI | GTCTC | 7 cut(s) | 214, 660, 1070, 1252, 1890, 1969, 2449 |
| BsmBI | CGTCTC | 1 cut(s) | 2449 |
| BsmFI | GGGAC | 6 cut(s) | 62, 1193, 1369, 2368, 2554, 2779 |
| BsmI | GAATGC | 1 cut(s) | 2345 |
| BsnI | GGCC | 8 cut(s) | 36, 62, 228, 262, 384, 1395, 1647, 2162 |
| Bso31I | GGTCTC | 2 cut(s) | 1070, 1969 |
| BsoBI | CYCGRG | 1 cut(s) | 2433 |
| Bsp120I | GGGCCC | 1 cut(s) | 34 |
| Bsp1286I | GDGCHC | 4 cut(s) | 38, 479, 1563, 2584 |
| Bsp19I | CCATGG | 1 cut(s) | 1268 |
| BspACI | CCGC | 7 cut(s) | 32, 381, 1717, 2190, 3103, 3118, 3152 |
| BspANI | GGCC | 8 cut(s) | 36, 62, 228, 262, 384, 1395, 1647, 2162 |
| BspCNI | CTCAG | 9 cut(s) | 185, 256, 686, 2166, 2223, 2326, 2414, 2513, 2596 |
| BspFNI | CGCG | 1 cut(s) | 381 |
| BspHI | TCATGA | 1 cut(s) | 769 |
| BspLI | GGNNCC | 8 cut(s) | 36, 522, 1208, 1209, 1368, 1691, 2103, 2188 |
| BspMAI | CTGCAG | 2 cut(s) | 544, 1438 |
| BspPI | GGATC | 7 cut(s) | 1356, 1468, 1684, 1697, 2389, 2425, 2513 |
| BspQI | GCTCTTC | 1 cut(s) | 394 |
| BspT107I | GGYRCC | 1 cut(s) | 2101 |
| BspTNI | GGTCTC | 2 cut(s) | 1070, 1969 |
| BsrDI | GCAATG | 1 cut(s) | 2510 |
| BsrI | ACTGG | 4 cut(s) | 361, 1648, 2266, 2372 |
| BssECI | CCNNGG | 5 cut(s) | 257, 1177, 1268, 1370, 3060 |
| BssSI | CACGAG | 1 cut(s) | 2472 |
| BssT1I | CCWWGG | 3 cut(s) | 1177, 1268, 1370 |
| Bst2BI | CACGAG | 1 cut(s) | 2472 |
| Bst2UI | CCWGG | 5 cut(s) | 225, 2415, 2897, 3045, 3062 |
| Bst4CI | ACNGT | 7 cut(s) | 141, 779, 1405, 1481, 1627, 2552, 3144 |
| Bst6I | CTCTTC | 5 cut(s) | 394, 1255, 2182, 2415, 3217 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2082 |
| BstC8I | GCNNGC | 2 cut(s) | 34, 2848 |
| BstDSI | CCRYGG | 1 cut(s) | 1268 |
| BstEII | GGTNACC | 1 cut(s) | 2754 |
| BstF5I | GGATG | 7 cut(s) | 15, 517, 529, 718, 799, 2267, 3025 |
| BstFNI | CGCG | 1 cut(s) | 381 |
| BstH2I | RGCGCY | 1 cut(s) | 2341 |
| BstHHI | GCGC | 3 cut(s) | 604, 1633, 2340 |
| BstMAI | GTCTC | 7 cut(s) | 214, 660, 1070, 1252, 1890, 1969, 2449 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 23, 68, 1769, 2067, 2082, 2099, 2435, 3040 |
| BstNI | CCWGG | 5 cut(s) | 225, 2415, 2897, 3045, 3062 |
| BstNSI | RCATGY | 1 cut(s) | 956 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2787 |
| BstPI | GGTNACC | 1 cut(s) | 2754 |
| BstSCI | CCNGG | 5 cut(s) | 223, 2413, 2895, 3043, 3060 |
| BstSFI | CTRYAG | 3 cut(s) | 540, 1434, 2829 |
| BstSLI | GKGCMC | 2 cut(s) | 38, 1563 |
| BstUI | CGCG | 1 cut(s) | 381 |
| BstV1I | GCAGC | 8 cut(s) | 526, 554, 943, 1448, 1561, 1952, 2711, 2790 |
| BstV2I | GAAGAC | 2 cut(s) | 955, 1943 |
| BstX2I | RGATCY | 4 cut(s) | 1689, 2381, 2593, 3088 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2953 |
| BstYI | RGATCY | 4 cut(s) | 1689, 2381, 2593, 3088 |
| BsuI | GTATCC | 2 cut(s) | 264, 1846 |
| BsuRI | GGCC | 8 cut(s) | 36, 62, 228, 262, 384, 1395, 1647, 2162 |
| BtgI | CCRYGG | 1 cut(s) | 1268 |
| BtrI | CACGTC | 1 cut(s) | 2789 |
| BtsCI | GGATG | 7 cut(s) | 15, 517, 529, 718, 799, 2267, 3025 |
| BtsI | GCAGTG | 2 cut(s) | 66, 711 |
| BtsIMutI | CAGTG | 8 cut(s) | 66, 711, 1208, 2259, 2356, 2946, 3130, 3149 |
| Cac8I | GCNNGC | 2 cut(s) | 34, 2848 |
| CaiI | CAGNNNCTG | 3 cut(s) | 635, 658, 1479 |
| CciI | TCATGA | 1 cut(s) | 769 |
| CfoI | GCGC | 3 cut(s) | 604, 1633, 2340 |
| Cfr13I | GGNCC | 5 cut(s) | 34, 35, 1207, 1226, 1265 |
| CseI | GACGC | 2 cut(s) | 114, 2666 |
| Csp6I | GTAC | 7 cut(s) | 169, 890, 917, 1105, 1158, 1401, 3181 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1552, 1587, 2505, 2540 |
| CviQI | GTAC | 7 cut(s) | 169, 890, 917, 1105, 1158, 1401, 3181 |
| DraI | TTTAAA | 1 cut(s) | 2017 |
| DraIII | CACNNNGTG | 1 cut(s) | 2474 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1904, 2463 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1904, 2463 |
| EaeI | YGGCCR | 3 cut(s) | 60, 226, 1645 |
| Eam1104I | CTCTTC | 5 cut(s) | 394, 1255, 2182, 2415, 3217 |
| EarI | CTCTTC | 5 cut(s) | 394, 1255, 2182, 2415, 3217 |
| Ecl136II | GAGCTC | 2 cut(s) | 477, 2582 |
| Eco130I | CCWWGG | 3 cut(s) | 1177, 1268, 1370 |
| Eco147I | AGGCCT | 2 cut(s) | 1395, 2162 |
| Eco24I | GRGCYC | 3 cut(s) | 38, 479, 2584 |
| Eco31I | GGTCTC | 2 cut(s) | 1070, 1969 |
| Eco32I | GATATC | 1 cut(s) | 1039 |
| Eco47I | GGWCC | 3 cut(s) | 1207, 1226, 1265 |
| Eco53kI | GAGCTC | 2 cut(s) | 477, 2582 |
| Eco57I | CTGAAG | 8 cut(s) | 116, 363, 450, 612, 1236, 1824, 2970, 3091 |
| Eco88I | CYCGRG | 1 cut(s) | 2433 |
| Eco91I | GGTNACC | 1 cut(s) | 2754 |
| EcoICRI | GAGCTC | 2 cut(s) | 477, 2582 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1207 |
| EcoO65I | GGTNACC | 1 cut(s) | 2754 |
| EcoRI | GAATTC | 1 cut(s) | 1239 |
| EcoRII | CCWGG | 5 cut(s) | 223, 2413, 2895, 3043, 3060 |
| EcoRV | GATATC | 1 cut(s) | 1039 |
| EcoT14I | CCWWGG | 3 cut(s) | 1177, 1268, 1370 |
| EcoT22I | ATGCAT | 2 cut(s) | 787, 2914 |
| EcoT38I | GRGCYC | 3 cut(s) | 38, 479, 2584 |
| ErhI | CCWWGG | 3 cut(s) | 1177, 1268, 1370 |
| Esp3I | CGTCTC | 1 cut(s) | 2449 |
| FaqI | GGGAC | 6 cut(s) | 62, 1193, 1369, 2368, 2554, 2779 |
| FauI | CCCGC | 2 cut(s) | 25, 1724 |
| FblI | GTMKAC | 1 cut(s) | 1525 |
| FokI | GGATG | 7 cut(s) | 22, 516, 524, 725, 806, 2254, 3032 |
| FriOI | GRGCYC | 3 cut(s) | 38, 479, 2584 |
| GlaI | GCGC | 3 cut(s) | 603, 1632, 2339 |
| HaeII | RGCGCY | 1 cut(s) | 2341 |
| HaeIII | GGCC | 8 cut(s) | 36, 62, 228, 262, 384, 1395, 1647, 2162 |
| HgaI | GACGC | 2 cut(s) | 114, 2666 |
| HhaI | GCGC | 3 cut(s) | 604, 1633, 2340 |
| Hin6I | GCGC | 3 cut(s) | 602, 1631, 2338 |
| HinP1I | GCGC | 3 cut(s) | 602, 1631, 2338 |
| HincII | GTYRAC | 2 cut(s) | 1526, 1585 |
| HindII | GTYRAC | 2 cut(s) | 1526, 1585 |
| HindIII | AAGCTT | 1 cut(s) | 1493 |
| HinfI | GANTC | 9 cut(s) | 152, 632, 881, 905, 1014, 1198, 1382, 2212, 3081 |
| HphI | GGTGA | 9 cut(s) | 506, 791, 833, 1007, 1145, 1328, 1550, 1863, 2436 |
| Hpy188III | TCNNGA | 8 cut(s) | 213, 666, 770, 1797, 2421, 2433, 2454, 2618 |
| HpyCH4III | ACNGT | 7 cut(s) | 141, 779, 1405, 1481, 1627, 2552, 3144 |
| HpyCH4IV | ACGT | 3 cut(s) | 1080, 2788, 2820 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 23, 68, 1769, 2067, 2082, 2099, 2435, 3040 |
| HpySE526I | ACGT | 3 cut(s) | 1080, 2788, 2820 |
| HspAI | GCGC | 3 cut(s) | 602, 1631, 2338 |
| KflI | GGGWCCC | 1 cut(s) | 1207 |
| LguI | GCTCTTC | 1 cut(s) | 394 |
| LmnI | GCTCC | 3 cut(s) | 609, 2192, 2317 |
| Lsp1109I | GCAGC | 8 cut(s) | 526, 554, 943, 1448, 1561, 1952, 2711, 2790 |
| LweI | GCATC | 6 cut(s) | 577, 703, 772, 1021, 2894, 2921 |
| MaeII | ACGT | 3 cut(s) | 1080, 2788, 2820 |
| MaeIII | GTNAC | 8 cut(s) | 84, 421, 706, 964, 1120, 1133, 1285, 2754 |
| MfeI | CAATTG | 4 cut(s) | 1301, 2041, 2648, 2880 |
| MflI | RGATCY | 4 cut(s) | 1689, 2381, 2593, 3088 |
| MhlI | GDGCHC | 4 cut(s) | 38, 479, 1563, 2584 |
| MlsI | TGGCCA | 3 cut(s) | 62, 228, 1647 |
| MluNI | TGGCCA | 3 cut(s) | 62, 228, 1647 |
| MlyI | GAGTC | 5 cut(s) | 875, 1008, 1207, 1391, 3090 |
| Mox20I | TGGCCA | 3 cut(s) | 62, 228, 1647 |
| Mph1103I | ATGCAT | 2 cut(s) | 787, 2914 |
| MroXI | GAANNNNTTC | 3 cut(s) | 156, 525, 2428 |
| MscI | TGGCCA | 3 cut(s) | 62, 228, 1647 |
| MslI | CAYNNNNRTG | 3 cut(s) | 534, 1113, 2951 |
| Msp20I | TGGCCA | 3 cut(s) | 62, 228, 1647 |
| MspA1I | CMGCKG | 1 cut(s) | 545 |
| MspR9I | CCNGG | 5 cut(s) | 225, 2415, 2897, 3045, 3062 |
| MunI | CAATTG | 4 cut(s) | 1301, 2041, 2648, 2880 |
| Mva1269I | GAATGC | 1 cut(s) | 2345 |
| MvaI | CCWGG | 5 cut(s) | 225, 2415, 2897, 3045, 3062 |
| MvnI | CGCG | 1 cut(s) | 381 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 23, 68, 1769, 2067, 2082, 2099, 2435, 3040 |
| NcoI | CCATGG | 1 cut(s) | 1268 |
| NlaIV | GGNNCC | 8 cut(s) | 36, 522, 1208, 1209, 1368, 1691, 2103, 2188 |
| NmeAIII | GCCGAG | 1 cut(s) | 238 |
| NmuCI | GTSAC | 4 cut(s) | 84, 706, 1133, 1285 |
| NsiI | ATGCAT | 2 cut(s) | 787, 2914 |
| NspI | RCATGY | 1 cut(s) | 956 |
| OliI | CACNNNNGTG | 1 cut(s) | 2951 |
| PaeR7I | CTCGAG | 1 cut(s) | 2433 |
| PagI | TCATGA | 1 cut(s) | 769 |
| PceI | AGGCCT | 2 cut(s) | 1395, 2162 |
| PciSI | GCTCTTC | 1 cut(s) | 394 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1405 |
| PctI | GAATGC | 1 cut(s) | 2345 |
| PdmI | GAANNNNTTC | 3 cut(s) | 156, 525, 2428 |
| PfeI | GAWTC | 4 cut(s) | 152, 632, 905, 2212 |
| PflFI | GACNNNGTC | 2 cut(s) | 1617, 2660 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2378 |
| PfoI | TCCNGGA | 1 cut(s) | 2413 |
| PleI | GAGTC | 5 cut(s) | 875, 1008, 1206, 1390, 3089 |
| PpsI | GAGTC | 5 cut(s) | 875, 1008, 1206, 1390, 3089 |
| PpuMI | RGGWCCY | 1 cut(s) | 1207 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2787 |
| PshBI | ATTAAT | 1 cut(s) | 371 |
| Psp124BI | GAGCTC | 2 cut(s) | 479, 2584 |
| Psp5II | RGGWCCY | 1 cut(s) | 1207 |
| Psp6I | CCWGG | 5 cut(s) | 223, 2413, 2895, 3043, 3060 |
| PspEI | GGTNACC | 1 cut(s) | 2754 |
| PspGI | CCWGG | 5 cut(s) | 223, 2413, 2895, 3043, 3060 |
| PspN4I | GGNNCC | 8 cut(s) | 36, 522, 1208, 1209, 1368, 1691, 2103, 2188 |
| PspOMI | GGGCCC | 1 cut(s) | 34 |
| PspPI | GGNCC | 5 cut(s) | 34, 35, 1207, 1226, 1265 |
| PspPPI | RGGWCCY | 1 cut(s) | 1207 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 909, 941 |
| PstI | CTGCAG | 2 cut(s) | 544, 1438 |
| PstNI | CAGNNNCTG | 3 cut(s) | 635, 658, 1479 |
| PsuI | RGATCY | 4 cut(s) | 1689, 2381, 2593, 3088 |
| PsyI | GACNNNGTC | 2 cut(s) | 1617, 2660 |
| PvuII | CAGCTG | 1 cut(s) | 545 |
| RsaI | GTAC | 7 cut(s) | 170, 891, 918, 1106, 1159, 1402, 3182 |
| RsaNI | GTAC | 7 cut(s) | 169, 890, 917, 1105, 1158, 1401, 3181 |
| RseI | CAYNNNNRTG | 3 cut(s) | 534, 1113, 2951 |
| SacI | GAGCTC | 2 cut(s) | 479, 2584 |
| SalI | GTCGAC | 1 cut(s) | 1524 |
| SapI | GCTCTTC | 1 cut(s) | 394 |
| Sau96I | GGNCC | 5 cut(s) | 34, 35, 1207, 1226, 1265 |
| ScaI | AGTACT | 1 cut(s) | 1159 |
| SchI | GAGTC | 5 cut(s) | 875, 1008, 1207, 1391, 3090 |
| ScrFI | CCNGG | 5 cut(s) | 225, 2415, 2897, 3045, 3062 |
| SduI | GDGCHC | 4 cut(s) | 38, 479, 1563, 2584 |
| SfaNI | GCATC | 6 cut(s) | 577, 703, 772, 1021, 2894, 2921 |
| SfcI | CTRYAG | 3 cut(s) | 540, 1434, 2829 |
| Sfr274I | CTCGAG | 1 cut(s) | 2433 |
| SinI | GGWCC | 3 cut(s) | 1207, 1226, 1265 |
| SlaI | CTCGAG | 1 cut(s) | 2433 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 534, 1113, 2951 |
| SmlI | CTYRAG | 4 cut(s) | 1695, 2087, 2433, 3092 |
| SmoI | CTYRAG | 4 cut(s) | 1695, 2087, 2433, 3092 |
| SpeI | ACTAGT | 1 cut(s) | 437 |
| SseBI | AGGCCT | 2 cut(s) | 1395, 2162 |
| SsiI | CCGC | 7 cut(s) | 32, 381, 1717, 2190, 3103, 3118, 3152 |
| SspI | AATATT | 1 cut(s) | 2245 |
| SstI | GAGCTC | 2 cut(s) | 479, 2584 |
| StuI | AGGCCT | 2 cut(s) | 1395, 2162 |
| StyD4I | CCNGG | 5 cut(s) | 223, 2413, 2895, 3043, 3060 |
| StyI | CCWWGG | 3 cut(s) | 1177, 1268, 1370 |
| TaaI | ACNGT | 7 cut(s) | 141, 779, 1405, 1481, 1627, 2552, 3144 |
| TaiI | ACGT | 3 cut(s) | 1083, 2791, 2823 |
| TatI | WGTACW | 2 cut(s) | 1157, 3180 |
| TauI | GCSGC | 2 cut(s) | 384, 3155 |
| TfiI | GAWTC | 4 cut(s) | 152, 632, 905, 2212 |
| TscAI | CASTG | 8 cut(s) | 73, 711, 1208, 2266, 2356, 2953, 3130, 3149 |
| TseFI | GTSAC | 4 cut(s) | 84, 706, 1133, 1285 |
| TseI | GCWGC | 8 cut(s) | 539, 542, 956, 1436, 1574, 1940, 2699, 2778 |
| Tsp45I | GTSAC | 4 cut(s) | 84, 706, 1133, 1285 |
| TspGWI | ACGGA | 3 cut(s) | 725, 893, 1995 |
| TspRI | CASTG | 8 cut(s) | 73, 711, 1208, 2266, 2356, 2953, 3130, 3149 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1617, 2660 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2378 |
| VpaK11BI | GGWCC | 3 cut(s) | 1207, 1226, 1265 |
| VspI | ATTAAT | 1 cut(s) | 371 |
| XapI | RAATTY | 6 cut(s) | 122, 1085, 1239, 1744, 1865, 2959 |
| XbaI | TCTAGA | 1 cut(s) | 212 |
| XceI | RCATGY | 1 cut(s) | 956 |
| XhoI | CTCGAG | 1 cut(s) | 2433 |
| XmiI | GTMKAC | 1 cut(s) | 1525 |
| XmnI | GAANNNNTTC | 3 cut(s) | 156, 525, 2428 |
| ZrmI | AGTACT | 1 cut(s) | 1159 |
| Zsp2I | ATGCAT | 2 cut(s) | 787, 2914 |