pycom07g23440

Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
24363586 .. 24364264
679 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23440.2

Sequence Viewer

Length: 633 bp
ATGGGTGGTTTAGGCAAAACAACCATCGCTAAAGCTGTCCGTGATGAAATCGCTGGTCAATTTGAAACTTGTTGCTTTCTTGAAAATGTCAAGGAGGGTTTCGTGAAGCATGGCCAACTACATATGCAGACACAACTTCTCTCGAGTATCTCAAACAACAAGGTGGGGAGTTCCGATATTTTGGTTAAAGGTTTCCAGGTGATGTTAAATAGCCTAAGTCAGAGAAAGGTCCTTATTGTTATTGATGATGTGGACAAATTAGAACAAATTGAAGCTTTACTTGGAGAGCAACATTCTTCCTTTGGTGGTGGAAGTAGAATTATTATAACAACTAGAGATTTGGAATTACTAAGCGGAACTGATGCGATATATGAGCCCAAGATTTTCAGTGATCCCGGAGCTCTAGAACTCTTTAGGCAGTACGCCTTCAAAACAAACCAACCCACTACAGATTATGATGATCTCACGAGGCGTGCCGTAAAATATGCTCAAGGTCTACCTCTAGCACTCAAAGTCTTGGGAGCCTTTCTTGATAACAAAACCATACGTGAGTGGAAAGGTGTCTTAGAAAAATTAAAGGAAGTCCCGCAAAGAAAGATTAATGATGTTCTTAGAACAATGCATGTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

211

Amino Acids

23.47

Weight (kDa)

7.75

Isoelectric Point (pI)

25.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AccI GTMKAC 1 cut(s) 496
AciI CCGC 2 cut(s) 354, 587
AclWI GGATC 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 112
AfaI GTAC 1 cut(s) 422
AgsI TTSAA 4 cut(s) 65, 83, 272, 430
AjnI CCWGG 1 cut(s) 195
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 3 cut(s) 35, 275, 401
AluI AGCT 3 cut(s) 35, 275, 401
Alw21I GWGCWC 1 cut(s) 403
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 1 cut(s) 112
AseI ATTAAT 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 1 cut(s) 229
BalI TGGCCA 1 cut(s) 114
BanII GRGCYC 2 cut(s) 378, 403
BauI CACGAG 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 403
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 1 cut(s) 396
BfaI CTAG 3 cut(s) 333, 404, 503
BfmI CTRYAG 1 cut(s) 447
Bme1390I CCNGG 2 cut(s) 197, 396
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 523
BmrFI CCNGG 2 cut(s) 197, 396
BmsI GCATC 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 396
BsaAI YACGTR 1 cut(s) 548
BseBI CCWGG 1 cut(s) 197
BshFI GGCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 403
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 142
Bsp1286I GDGCHC 2 cut(s) 378, 403
Bsp143I GATC 2 cut(s) 391, 460
BspACI CCGC 2 cut(s) 354, 587
BspANI GGCC 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 523
BspPI GGATC 1 cut(s) 386
BssMI GATC 2 cut(s) 391, 460
BssSI CACGAG 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 466
Bst2UI CCWGG 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 4 cut(s) 215, 350, 565, 611
BstKTI GATC 2 cut(s) 394, 463
BstMBI GATC 2 cut(s) 391, 460
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 195, 394
BstSFI CTRYAG 1 cut(s) 447
BsuRI GGCC 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 421
CviAII CATG 2 cut(s) 110, 623
CviJI RGCY 7 cut(s) 35, 114, 213, 275, 376, 401, 524
CviKI_1 RGCY 7 cut(s) 35, 114, 213, 275, 376, 401, 524
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 4 cut(s) 215, 350, 565, 611
DpnI GATC 2 cut(s) 393, 462
DpnII GATC 2 cut(s) 391, 460
EaeI YGGCCR 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 401
Eco24I GRGCYC 2 cut(s) 378, 403
Eco47I GGWCC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 624
EcoT38I GRGCYC 2 cut(s) 378, 403
FaeI CATG 2 cut(s) 113, 626
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 569
FatI CATG 2 cut(s) 109, 622
FauI CCCGC 1 cut(s) 594
FauNDI CATATG 1 cut(s) 123
FblI GTMKAC 1 cut(s) 496
FriOI GRGCYC 2 cut(s) 378, 403
FspBI CTAG 3 cut(s) 333, 404, 503
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 396
Hin1II CATG 2 cut(s) 113, 626
HindIII AAGCTT 1 cut(s) 273
HpaII CCGG 1 cut(s) 396
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 253, 497
Hpy188I TCNGA 2 cut(s) 175, 222
Hpy188III TCNNGA 6 cut(s) 80, 103, 142, 404, 466, 530
Hpy8I GTNNAC 2 cut(s) 253, 497
HpyAV CCTTC 1 cut(s) 436
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 2 cut(s) 127, 622
HpyF3I CTNAG 4 cut(s) 215, 350, 565, 611
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 2 cut(s) 113, 626
Kzo9I GATC 2 cut(s) 391, 460
LmnI GCTCC 2 cut(s) 398, 521
LpnPI CCDG 4 cut(s) 39, 182, 209, 409
LweI GCATC 1 cut(s) 352
MaeI CTAG 3 cut(s) 333, 404, 503
MaeII ACGT 1 cut(s) 547
MalI GATC 2 cut(s) 393, 462
MboI GATC 2 cut(s) 391, 460
MboII GAAGA 1 cut(s) 288
MhlI GDGCHC 2 cut(s) 378, 403
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 6 cut(s) 59, 257, 267, 318, 344, 572
MluNI TGGCCA 1 cut(s) 114
MnlI CCTC 3 cut(s) 88, 462, 510
Mox20I TGGCCA 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 624
MscI TGGCCA 1 cut(s) 114
MseI TTAA 5 cut(s) 186, 206, 575, 600, 631
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 2 cut(s) 197, 396
MvaI CCWGG 1 cut(s) 197
NciI CCSGG 1 cut(s) 396
NdeI CATATG 1 cut(s) 123
NdeII GATC 2 cut(s) 391, 460
NlaIII CATG 2 cut(s) 113, 626
NlaIV GGNNCC 1 cut(s) 523
NsiI ATGCAT 1 cut(s) 624
NspI RCATGY 1 cut(s) 626
PaeR7I CTCGAG 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 229
PshBI ATTAAT 1 cut(s) 600
PsiI TTATAA 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 403
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 523
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SacI GAGCTC 1 cut(s) 403
SaqAI TTAA 5 cut(s) 186, 206, 575, 600, 631
Sau3AI GATC 2 cut(s) 391, 460
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 197, 396
SduI GDGCHC 2 cut(s) 378, 403
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 447
Sfr274I CTCGAG 1 cut(s) 142
SinI GGWCC 1 cut(s) 229
SlaI CTCGAG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 142, 489
SmoI CTYRAG 2 cut(s) 142, 489
Sse9I AATT 6 cut(s) 59, 257, 267, 318, 344, 572
SsiI CCGC 2 cut(s) 354, 587
SspMI CTAG 3 cut(s) 333, 404, 503
SstI GAGCTC 1 cut(s) 403
StyD4I CCNGG 2 cut(s) 195, 394
TaiI ACGT 1 cut(s) 550
TaqI TCGA 1 cut(s) 143
TasI AATT 6 cut(s) 59, 257, 267, 318, 344, 572
Tru1I TTAA 5 cut(s) 186, 206, 575, 600, 631
Tru9I TTAA 5 cut(s) 186, 206, 575, 600, 631
TscAI CASTG 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 229
VspI ATTAAT 1 cut(s) 600
XbaI TCTAGA 1 cut(s) 403
XceI RCATGY 1 cut(s) 626
XhoI CTCGAG 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 496
XspI CTAG 3 cut(s) 333, 404, 503
Zsp2I ATGCAT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.