TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR_2 | PF13676 | 1 - 66 | 3.2e-07 | TIR domain |
| TIR | PF01582 | 2 - 117 | 2e-32 | TIR domain |
| WHD_ROQ1 | PF23282 | 192 - 261 | 9.4e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 375 - 394 | 6.8e-06 | Leucine Rich Repeat |
| LRR_14 | PF23598 | 457 - 550 | 5.2e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 466 - 537 | 1.4e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 537 - 606 | 1.6e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 539 - 608 | 5.9e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 609 - 705 | 3.4e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 609 - 716 | 1e-13 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 873 |
| Acc16I | TGCGCA | 1 cut(s) | 2114 |
| Acc36I | ACCTGC | 1 cut(s) | 1274 |
| AccB1I | GGYRCC | 1 cut(s) | 172 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2092 |
| AccI | GTMKAC | 1 cut(s) | 873 |
| AciI | CCGC | 2 cut(s) | 267, 668 |
| AclWI | GGATC | 3 cut(s) | 188, 229, 1231 |
| AcsI | RAATTY | 3 cut(s) | 531, 1444, 2098 |
| AcuI | CTGAAG | 4 cut(s) | 252, 1443, 1811, 1943 |
| AcyI | GRCGYC | 2 cut(s) | 870, 962 |
| AdeI | CACNNNGTG | 2 cut(s) | 114, 2095 |
| AfaI | GTAC | 4 cut(s) | 1133, 1552, 1578, 1694 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 527, 674, 1033, 1702, 2092 |
| AflII | CTTAAG | 2 cut(s) | 1370, 1859 |
| AgsI | TTSAA | 9 cut(s) | 49, 121, 217, 836, 1331, 1348, 1952, 2042, 2123 |
| AjnI | CCWGG | 1 cut(s) | 526 |
| AleI | CACNNNNGTG | 1 cut(s) | 1029 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 669, 701 |
| Alw21I | GWGCWC | 3 cut(s) | 546, 703, 2066 |
| Alw26I | GTCTC | 5 cut(s) | 621, 2055, 2144, 2178, 2207 |
| AlwI | GGATC | 3 cut(s) | 188, 229, 1231 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1966, 2022 |
| Ama87I | CYCGRG | 2 cut(s) | 737, 1540 |
| AoxI | GGCC | 2 cut(s) | 1333, 2233 |
| ApeKI | GCWGC | 4 cut(s) | 887, 1428, 1806, 1966 |
| ApoI | RAATTY | 3 cut(s) | 531, 1444, 2098 |
| AseI | ATTAAT | 1 cut(s) | 1293 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 129, 1956 |
| AspLEI | GCGC | 2 cut(s) | 2115, 2128 |
| AsuHPI | GGTGA | 5 cut(s) | 295, 1106, 1301, 2107, 2191 |
| AvaI | CYCGRG | 2 cut(s) | 737, 1540 |
| AxyI | CCTNAGG | 1 cut(s) | 1229 |
| BanI | GGYRCC | 1 cut(s) | 172 |
| BanII | GRGCYC | 1 cut(s) | 703 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 627, 659, 1676, 1708 |
| BbsI | GAAGAC | 1 cut(s) | 1580 |
| Bbv12I | GWGCWC | 3 cut(s) | 546, 703, 2066 |
| BbvCI | CCTCAGC | 1 cut(s) | 1061 |
| BbvI | GCAGC | 4 cut(s) | 899, 1415, 1818, 1953 |
| BccI | CCATC | 7 cut(s) | 324, 554, 719, 1321, 1490, 1700, 1910 |
| BceAI | ACGGC | 1 cut(s) | 1970 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 338, 372 |
| BciT130I | CCWGG | 1 cut(s) | 528 |
| BcoDI | GTCTC | 5 cut(s) | 621, 2055, 2144, 2178, 2207 |
| BfaI | CTAG | 6 cut(s) | 566, 593, 689, 848, 878, 1136 |
| BfmI | CTRYAG | 2 cut(s) | 610, 885 |
| BfrI | CTTAAG | 2 cut(s) | 1370, 1859 |
| BfuAI | ACCTGC | 1 cut(s) | 1274 |
| BisI | GCNGC | 5 cut(s) | 267, 888, 1429, 1807, 1967 |
| BlsI | GCNGC | 5 cut(s) | 268, 889, 1430, 1808, 1968 |
| BmcAI | AGTACT | 1 cut(s) | 1578 |
| Bme1390I | CCNGG | 1 cut(s) | 528 |
| BmeT110I | CYCGRG | 2 cut(s) | 737, 1540 |
| BmiI | GGNNCC | 1 cut(s) | 174 |
| BmrFI | CCNGG | 1 cut(s) | 528 |
| BmrI | ACTGGG | 1 cut(s) | 2067 |
| BmsI | GCATC | 4 cut(s) | 142, 732, 1087, 1365 |
| BmuI | ACTGGG | 1 cut(s) | 2067 |
| BpiI | GAAGAC | 1 cut(s) | 1580 |
| Bpu10I | CCTNAGC | 2 cut(s) | 545, 1061 |
| BpuEI | CTTGAG | 5 cut(s) | 49, 941, 981, 1250, 1670 |
| Bsa29I | ATCGAT | 1 cut(s) | 1081 |
| BsaBI | GATNNNNATC | 2 cut(s) | 813, 1202 |
| BsaHI | GRCGYC | 2 cut(s) | 870, 962 |
| BsaJI | CCNNGG | 1 cut(s) | 526 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 772, 802 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 527, 674, 1033, 1702, 2092 |
| Bse1I | ACTGG | 4 cut(s) | 132, 296, 1596, 2062 |
| Bse21I | CCTNAGG | 1 cut(s) | 1229 |
| Bse8I | GATNNNNATC | 2 cut(s) | 813, 1202 |
| BseBI | CCWGG | 1 cut(s) | 528 |
| BseCI | ATCGAT | 1 cut(s) | 1081 |
| BseDI | CCNNGG | 1 cut(s) | 526 |
| BseGI | GGATG | 6 cut(s) | 157, 335, 1313, 1501, 1711, 1921 |
| BseJI | GATNNNNATC | 2 cut(s) | 813, 1202 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 527, 674, 1033, 1702, 2092 |
| BseMII | CTCAG | 8 cut(s) | 102, 559, 1019, 1052, 1242, 1576, 2189, 2213 |
| BseNI | ACTGG | 4 cut(s) | 132, 296, 1596, 2062 |
| BseXI | GCAGC | 4 cut(s) | 899, 1415, 1818, 1953 |
| BseYI | CCCAGC | 1 cut(s) | 2085 |
| BsgI | GTGCAG | 2 cut(s) | 1414, 1975 |
| BshFI | GGCC | 2 cut(s) | 1335, 2235 |
| BshNI | GGYRCC | 1 cut(s) | 172 |
| BshVI | ATCGAT | 1 cut(s) | 1081 |
| BsiHKAI | GWGCWC | 3 cut(s) | 546, 703, 2066 |
| BsiHKCI | CYCGRG | 2 cut(s) | 737, 1540 |
| BslFI | GGGAC | 5 cut(s) | 841, 1049, 1513, 1723, 1933 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 527, 674, 1033, 1702, 2092 |
| BsmAI | GTCTC | 5 cut(s) | 621, 2055, 2144, 2178, 2207 |
| BsmFI | GGGAC | 5 cut(s) | 841, 1049, 1513, 1723, 1933 |
| BsmI | GAATGC | 1 cut(s) | 1809 |
| BsnI | GGCC | 2 cut(s) | 1335, 2235 |
| BsoBI | CYCGRG | 2 cut(s) | 737, 1540 |
| Bsp1286I | GDGCHC | 3 cut(s) | 546, 703, 2066 |
| Bsp143I | GATC | 8 cut(s) | 193, 221, 394, 946, 1236, 1417, 1627, 1837 |
| BspACI | CCGC | 2 cut(s) | 267, 668 |
| BspANI | GGCC | 2 cut(s) | 1335, 2235 |
| BspCNI | CTCAG | 8 cut(s) | 101, 558, 1020, 1053, 1243, 1575, 2188, 2212 |
| BspDI | ATCGAT | 1 cut(s) | 1081 |
| BspHI | TCATGA | 1 cut(s) | 1054 |
| BspLI | GGNNCC | 1 cut(s) | 174 |
| BspMAI | CTGCAG | 1 cut(s) | 889 |
| BspMI | ACCTGC | 1 cut(s) | 1274 |
| BspPI | GGATC | 3 cut(s) | 188, 229, 1231 |
| BspQI | GCTCTTC | 2 cut(s) | 1332, 2037 |
| BspT107I | GGYRCC | 1 cut(s) | 172 |
| BspTI | CTTAAG | 2 cut(s) | 1370, 1859 |
| BsrI | ACTGG | 4 cut(s) | 132, 296, 1596, 2062 |
| BssECI | CCNNGG | 1 cut(s) | 526 |
| BssMI | GATC | 8 cut(s) | 193, 221, 394, 946, 1236, 1417, 1627, 1837 |
| BssNI | GRCGYC | 2 cut(s) | 870, 962 |
| Bst2UI | CCWGG | 1 cut(s) | 528 |
| Bst4CI | ACNGT | 3 cut(s) | 387, 1016, 2018 |
| Bst6I | CTCTTC | 4 cut(s) | 273, 1332, 2037, 2180 |
| BstACI | GRCGYC | 2 cut(s) | 870, 962 |
| BstAFI | CTTAAG | 2 cut(s) | 1370, 1859 |
| BstC8I | GCNNGC | 4 cut(s) | 408, 1391, 2035, 2224 |
| BstF5I | GGATG | 6 cut(s) | 157, 335, 1313, 1501, 1711, 1921 |
| BstHHI | GCGC | 2 cut(s) | 2115, 2128 |
| BstKTI | GATC | 8 cut(s) | 196, 224, 397, 949, 1239, 1420, 1630, 1840 |
| BstMAI | GTCTC | 5 cut(s) | 621, 2055, 2144, 2178, 2207 |
| BstMBI | GATC | 8 cut(s) | 193, 221, 394, 946, 1236, 1417, 1627, 1837 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 827, 1483, 1788, 1803, 1963, 2232 |
| BstNI | CCWGG | 1 cut(s) | 528 |
| BstNSI | RCATGY | 4 cut(s) | 1144, 1393, 2037, 2222 |
| BstSCI | CCNGG | 1 cut(s) | 526 |
| BstSFI | CTRYAG | 2 cut(s) | 610, 885 |
| BstV1I | GCAGC | 4 cut(s) | 899, 1415, 1818, 1953 |
| BstV2I | GAAGAC | 1 cut(s) | 1580 |
| BstX2I | RGATCY | 3 cut(s) | 193, 221, 1236 |
| BstYI | RGATCY | 3 cut(s) | 193, 221, 1236 |
| Bsu15I | ATCGAT | 1 cut(s) | 1081 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1229 |
| BsuRI | GGCC | 2 cut(s) | 1335, 2235 |
| BsuTUI | ATCGAT | 1 cut(s) | 1081 |
| BtsCI | GGATG | 6 cut(s) | 157, 335, 1313, 1501, 1711, 1921 |
| BtsIMutI | CAGTG | 2 cut(s) | 289, 1248 |
| BveI | ACCTGC | 1 cut(s) | 1274 |
| Cac8I | GCNNGC | 4 cut(s) | 408, 1391, 2035, 2224 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1966, 2022 |
| CciI | TCATGA | 1 cut(s) | 1054 |
| CfoI | GCGC | 2 cut(s) | 2115, 2128 |
| ClaI | ATCGAT | 1 cut(s) | 1081 |
| CseI | GACGC | 1 cut(s) | 951 |
| Csp6I | GTAC | 4 cut(s) | 1132, 1551, 1577, 1693 |
| CviQI | GTAC | 4 cut(s) | 1132, 1551, 1577, 1693 |
| DpnI | GATC | 8 cut(s) | 195, 223, 396, 948, 1238, 1419, 1629, 1839 |
| DpnII | GATC | 8 cut(s) | 193, 221, 394, 946, 1236, 1417, 1627, 1837 |
| DraIII | CACNNNGTG | 2 cut(s) | 114, 2095 |
| Eam1104I | CTCTTC | 4 cut(s) | 273, 1332, 2037, 2180 |
| EarI | CTCTTC | 4 cut(s) | 273, 1332, 2037, 2180 |
| Ecl136II | GAGCTC | 1 cut(s) | 701 |
| Eco147I | AGGCCT | 1 cut(s) | 1335 |
| Eco24I | GRGCYC | 1 cut(s) | 703 |
| Eco53kI | GAGCTC | 1 cut(s) | 701 |
| Eco57I | CTGAAG | 4 cut(s) | 252, 1443, 1811, 1943 |
| Eco81I | CCTNAGG | 1 cut(s) | 1229 |
| Eco88I | CYCGRG | 2 cut(s) | 737, 1540 |
| EcoICRI | GAGCTC | 1 cut(s) | 701 |
| EcoRI | GAATTC | 1 cut(s) | 531 |
| EcoRII | CCWGG | 1 cut(s) | 526 |
| EcoT22I | ATGCAT | 1 cut(s) | 747 |
| EcoT38I | GRGCYC | 1 cut(s) | 703 |
| FaqI | GGGAC | 5 cut(s) | 841, 1049, 1513, 1723, 1933 |
| FauNDI | CATATG | 2 cut(s) | 1605, 1815 |
| FblI | GTMKAC | 1 cut(s) | 873 |
| Fnu4HI | GCNGC | 5 cut(s) | 267, 888, 1429, 1807, 1967 |
| FokI | GGATG | 6 cut(s) | 164, 342, 1300, 1508, 1718, 1928 |
| FriOI | GRGCYC | 1 cut(s) | 703 |
| Fsp4HI | GCNGC | 5 cut(s) | 267, 888, 1429, 1807, 1967 |
| FspBI | CTAG | 6 cut(s) | 566, 593, 689, 848, 878, 1136 |
| FspI | TGCGCA | 1 cut(s) | 2114 |
| GlaI | GCGC | 2 cut(s) | 2114, 2127 |
| GluI | GCNGC | 5 cut(s) | 267, 888, 1429, 1807, 1967 |
| GsaI | CCCAGC | 1 cut(s) | 2089 |
| HaeIII | GGCC | 2 cut(s) | 1335, 2235 |
| HgaI | GACGC | 1 cut(s) | 951 |
| HhaI | GCGC | 2 cut(s) | 2115, 2128 |
| Hin1I | GRCGYC | 2 cut(s) | 870, 962 |
| Hin6I | GCGC | 2 cut(s) | 2113, 2126 |
| HinP1I | GCGC | 2 cut(s) | 2113, 2126 |
| HindIII | AAGCTT | 3 cut(s) | 234, 553, 1820 |
| HphI | GGTGA | 5 cut(s) | 295, 1106, 1301, 2107, 2191 |
| Hpy166II | GTNNAC | 6 cut(s) | 677, 874, 1019, 1132, 1309, 1342 |
| Hpy8I | GTNNAC | 6 cut(s) | 677, 874, 1019, 1132, 1309, 1342 |
| Hpy99I | CGWCG | 1 cut(s) | 275 |
| HpyAV | CCTTC | 8 cut(s) | 211, 830, 1166, 1465, 1530, 1808, 1885, 2154 |
| HpyCH4III | ACNGT | 3 cut(s) | 387, 1016, 2018 |
| HpyCH4IV | ACGT | 1 cut(s) | 870 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 827, 1483, 1788, 1803, 1963, 2232 |
| HpySE526I | ACGT | 1 cut(s) | 870 |
| Hsp92I | GRCGYC | 2 cut(s) | 870, 962 |
| HspAI | GCGC | 2 cut(s) | 2113, 2126 |
| Kzo9I | GATC | 8 cut(s) | 193, 221, 394, 946, 1236, 1417, 1627, 1837 |
| LguI | GCTCTTC | 2 cut(s) | 1332, 2037 |
| LmnI | GCTCC | 4 cut(s) | 40, 455, 1474, 1894 |
| Lsp1109I | GCAGC | 4 cut(s) | 899, 1415, 1818, 1953 |
| LweI | GCATC | 4 cut(s) | 142, 732, 1087, 1365 |
| MaeI | CTAG | 6 cut(s) | 566, 593, 689, 848, 878, 1136 |
| MaeII | ACGT | 1 cut(s) | 870 |
| MaeIII | GTNAC | 3 cut(s) | 209, 634, 1214 |
| MalI | GATC | 8 cut(s) | 195, 223, 396, 948, 1238, 1419, 1629, 1839 |
| MboI | GATC | 8 cut(s) | 193, 221, 394, 946, 1236, 1417, 1627, 1837 |
| MfeI | CAATTG | 3 cut(s) | 652, 891, 1947 |
| MflI | RGATCY | 3 cut(s) | 193, 221, 1236 |
| MhlI | GDGCHC | 3 cut(s) | 546, 703, 2066 |
| MlyI | GAGTC | 3 cut(s) | 775, 2180, 2191 |
| MmeI | TCCRAC | 3 cut(s) | 18, 1616, 2174 |
| Mph1103I | ATGCAT | 1 cut(s) | 747 |
| MroXI | GAANNNNTTC | 2 cut(s) | 129, 1956 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1008, 1029, 1394, 1814 |
| MspCI | CTTAAG | 2 cut(s) | 1370, 1859 |
| MspR9I | CCNGG | 1 cut(s) | 528 |
| MunI | CAATTG | 3 cut(s) | 652, 891, 1947 |
| Mva1269I | GAATGC | 1 cut(s) | 1809 |
| MvaI | CCWGG | 1 cut(s) | 528 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 827, 1483, 1788, 1803, 1963, 2232 |
| NdeI | CATATG | 2 cut(s) | 1605, 1815 |
| NdeII | GATC | 8 cut(s) | 193, 221, 394, 946, 1236, 1417, 1627, 1837 |
| NlaIV | GGNNCC | 1 cut(s) | 174 |
| NmuCI | GTSAC | 1 cut(s) | 1214 |
| NsbI | TGCGCA | 1 cut(s) | 2114 |
| NsiI | ATGCAT | 1 cut(s) | 747 |
| NspI | RCATGY | 4 cut(s) | 1144, 1393, 2037, 2222 |
| OliI | CACNNNNGTG | 1 cut(s) | 1029 |
| PaeI | GCATGC | 2 cut(s) | 1393, 2037 |
| PaeR7I | CTCGAG | 1 cut(s) | 737 |
| PagI | TCATGA | 1 cut(s) | 1054 |
| PceI | AGGCCT | 1 cut(s) | 1335 |
| PciSI | GCTCTTC | 2 cut(s) | 1332, 2037 |
| PctI | GAATGC | 1 cut(s) | 1809 |
| PdmI | GAANNNNTTC | 2 cut(s) | 129, 1956 |
| PfeI | GAWTC | 9 cut(s) | 5, 335, 572, 783, 1123, 1348, 1645, 1855, 2105 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2092 |
| PkrI | GCNGC | 5 cut(s) | 268, 889, 1430, 1808, 1968 |
| PleI | GAGTC | 3 cut(s) | 774, 2179, 2191 |
| PpsI | GAGTC | 3 cut(s) | 774, 2179, 2191 |
| PshBI | ATTAAT | 1 cut(s) | 1293 |
| Psp124BI | GAGCTC | 1 cut(s) | 703 |
| Psp6I | CCWGG | 1 cut(s) | 526 |
| PspFI | CCCAGC | 1 cut(s) | 2085 |
| PspGI | CCWGG | 1 cut(s) | 526 |
| PspN4I | GGNNCC | 1 cut(s) | 174 |
| PstI | CTGCAG | 1 cut(s) | 889 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1966, 2022 |
| PsuI | RGATCY | 3 cut(s) | 193, 221, 1236 |
| RsaI | GTAC | 4 cut(s) | 1133, 1552, 1578, 1694 |
| RsaNI | GTAC | 4 cut(s) | 1132, 1551, 1577, 1693 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1008, 1029, 1394, 1814 |
| SacI | GAGCTC | 1 cut(s) | 703 |
| SapI | GCTCTTC | 2 cut(s) | 1332, 2037 |
| SatI | GCNGC | 5 cut(s) | 267, 888, 1429, 1807, 1967 |
| Sau3AI | GATC | 8 cut(s) | 193, 221, 394, 946, 1236, 1417, 1627, 1837 |
| ScaI | AGTACT | 1 cut(s) | 1578 |
| SchI | GAGTC | 3 cut(s) | 775, 2180, 2191 |
| ScrFI | CCNGG | 1 cut(s) | 528 |
| SduI | GDGCHC | 3 cut(s) | 546, 703, 2066 |
| SfaNI | GCATC | 4 cut(s) | 142, 732, 1087, 1365 |
| SfcI | CTRYAG | 2 cut(s) | 610, 885 |
| Sfr274I | CTCGAG | 1 cut(s) | 737 |
| SlaI | CTCGAG | 1 cut(s) | 737 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1008, 1029, 1394, 1814 |
| SmlI | CTYRAG | 9 cut(s) | 9, 64, 737, 920, 996, 1265, 1370, 1649, 1859 |
| SmoI | CTYRAG | 9 cut(s) | 9, 64, 737, 920, 996, 1265, 1370, 1649, 1859 |
| SphI | GCATGC | 2 cut(s) | 1393, 2037 |
| SseBI | AGGCCT | 1 cut(s) | 1335 |
| SsiI | CCGC | 2 cut(s) | 267, 668 |
| SspI | AATATT | 2 cut(s) | 1438, 2080 |
| SspMI | CTAG | 6 cut(s) | 566, 593, 689, 848, 878, 1136 |
| SstI | GAGCTC | 1 cut(s) | 703 |
| StuI | AGGCCT | 1 cut(s) | 1335 |
| StyD4I | CCNGG | 1 cut(s) | 526 |
| TaaI | ACNGT | 3 cut(s) | 387, 1016, 2018 |
| TaiI | ACGT | 1 cut(s) | 873 |
| TaqI | TCGA | 7 cut(s) | 693, 738, 1081, 1222, 1626, 1643, 1853 |
| TatI | WGTACW | 2 cut(s) | 1550, 1576 |
| TauI | GCSGC | 1 cut(s) | 269 |
| TfiI | GAWTC | 9 cut(s) | 5, 335, 572, 783, 1123, 1348, 1645, 1855, 2105 |
| TscAI | CASTG | 2 cut(s) | 296, 1255 |
| TseFI | GTSAC | 1 cut(s) | 1214 |
| TseI | GCWGC | 4 cut(s) | 887, 1428, 1806, 1966 |
| Tsp45I | GTSAC | 1 cut(s) | 1214 |
| TspRI | CASTG | 2 cut(s) | 296, 1255 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2092 |
| Vha464I | CTTAAG | 2 cut(s) | 1370, 1859 |
| VspI | ATTAAT | 1 cut(s) | 1293 |
| XapI | RAATTY | 3 cut(s) | 531, 1444, 2098 |
| XbaI | TCTAGA | 1 cut(s) | 592 |
| XceI | RCATGY | 4 cut(s) | 1144, 1393, 2037, 2222 |
| XhoI | CTCGAG | 1 cut(s) | 737 |
| XmiI | GTMKAC | 1 cut(s) | 873 |
| XmnI | GAANNNNTTC | 2 cut(s) | 129, 1956 |
| XspI | CTAG | 6 cut(s) | 566, 593, 689, 848, 878, 1136 |
| ZraI | GACGTC | 1 cut(s) | 871 |
| ZrmI | AGTACT | 1 cut(s) | 1578 |
| Zsp2I | ATGCAT | 1 cut(s) | 747 |