Rh1CG380500

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
65010260 .. 65011740
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG380500.1

Sequence Viewer

Length: 1296 bp
ATGACGGCACCCTTGTCAGCCTGGCCATCATCAGTCGAAGAATATTGTAGTTACTCTGTTCTGCTACGTCTTGATTTAAGTGACTGCAATCTGTTGGAGTTATCGGATGGTATTGCTCATTTATATTCATTGAAAACATTAAAGCTGTGCAGAAACAATTTGGAGAGCTTACCTGTGACAATCAATCGACTTCGTTGTCTAACGCATCTTGAATTGGAAGCTTGTAAGCGACTGAAGTCGGTACCTGAGCTTTCATCGAGTGTAATACGCATAGATGCACATGATTGCACAGCTCTGGAAACAGTTTCAAGACGAAAGACTGATCCAGACAGTCATCTGCGACCTCTGTGGTTCCACATGTGGCTTCCTGGAAGTGAAGTTCCAGAATGGTTCAACCTTCGGGATACAGGATGTTCAGAAACTTTTCGGAAGACAGGATGTTCAGCAACTTTCCAAGCACCACTGAATAGTTTCAATAACAAGCTTTTAGGATTTGCTATATGCATTGTTATTAAATTCAATGGTGCTCGTCATGATGTATCTGATATGTATGGAAGATGTTATTGGACCTCAAAAGGAAAGCATGGTGAGTACTCCTTCGAATTTGATTTGCTCGGCCGGCAGTTCGGAATTTACAGTATAGAGTCAGATCACCTGTTCATGGCATATTTGCCATGGTCTGGATATGGCAGGATTTCACAAGATAGATTAGATGCATTCAAGATTGTAGTAGAAACTGGAACCTATTCTCCGACAGAAGATTGGTTTACTAGTGGCTGCGGTGTTCGTTTAGTTTATGCTCACGATGAGATGCAAAATAGCGTGACACAGCCCCTAATTCATGTAGATGGCCAGACAATGGAGGATGCGGTGCAGCAGGGGGAGGGGTGCTGTGCTATAGGAGGGGTGTCGGGGCTTGGCGCACCTTTCTTTACGGACCCGTTGGAAATAAGAAAGAGTGAAACAGAGTTGGAGGCAGAGTCATCGGAGTCGCGTGAGGAGAGAGGCACGTGCCAAATACCAGAGCCGCAGACCGAGAGAAAAGAAGAGGAGGAGGGAGAGGGGTGCCAGGTGTTAGGGTCGGCATTCTCTCTGAGAAAGAAAGAAACAGAAAGAGAAGGAGACAGAGTCACCAGAATCTCGGACGAGGGGGAGATATCGGAGTTGGGCAGCCACAGTGATCTGGTGGTGCCAAATTCACAGAGTGAGGGCAAAGAAGAGAAAGAATTGATGGGGGAGGAGTCGTTGGAGAGGGTTGTTAGGGCCGCTGTGCAGCTGCTTTTACTGGCTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

48.29

Weight (kDa)

4.91

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 21 - 79 1.2e-06 Leucine-rich repeat region
LRR_8 PF13855 23 - 75 6.6e-07 Leucine rich repeat
C-JID PF20160 122 - 269 1.9e-10 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 195
Acc65I GGTACC 1 cut(s) 241
AccB1I GGYRCC 4 cut(s) 7, 241, 1065, 1189
AccB7I CCANNNNNTGG 2 cut(s) 680, 859
AccII CGCG 1 cut(s) 994
AciI CCGC 4 cut(s) 780, 869, 1028, 1266
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 3 cut(s) 23, 616, 850
AcsI RAATTY 4 cut(s) 515, 602, 630, 1195
AcuI CTGAAG 1 cut(s) 254
AcvI CACGTG 1 cut(s) 1011
AdeI CACNNNGTG 1 cut(s) 1205
AfaI GTAC 2 cut(s) 243, 593
AfiI CCNNNNNNNGG 3 cut(s) 661, 680, 859
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 7 cut(s) 133, 212, 309, 394, 475, 520, 721
AhlI ACTAGT 1 cut(s) 770
AjnI CCWGG 3 cut(s) 20, 367, 1068
AjuI GAANNNNNNNTTGG 2 cut(s) 547, 579
AloI GAACNNNNNNTCC 4 cut(s) 363, 395, 733, 765
AluBI AGCT 7 cut(s) 145, 168, 221, 250, 293, 484, 1276
AluI AGCT 7 cut(s) 145, 168, 221, 250, 293, 484, 1276
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 1116
AlwI GGATC 1 cut(s) 317
AoxI GGCC 4 cut(s) 23, 616, 850, 1263
ApeKI GCWGC 5 cut(s) 777, 874, 1170, 1273, 1276
ApoI RAATTY 4 cut(s) 515, 602, 630, 1195
Asp700I GAANNNNTTC 3 cut(s) 423, 470, 745
Asp718I GGTACC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 923
AspS9I GGNCC 3 cut(s) 567, 937, 1263
AsuHPI GGTGA 3 cut(s) 599, 644, 1123
AsuII TTCGAA 1 cut(s) 600
AvaII GGWCC 2 cut(s) 567, 937
BalI TGGCCA 2 cut(s) 25, 852
BanI GGYRCC 4 cut(s) 7, 241, 1065, 1189
BbrPI CACGTG 1 cut(s) 1011
BbsI GAAGAC 1 cut(s) 437
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 5 cut(s) 764, 886, 1182, 1263, 1285
BccI CCATC 4 cut(s) 34, 101, 842, 1225
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 966, 1000
BciT130I CCWGG 3 cut(s) 22, 369, 1070
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 1116
BcuI ACTAGT 1 cut(s) 770
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 1 cut(s) 897
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 7 cut(s) 778, 875, 1028, 1171, 1266, 1274, 1277
BlsI GCNGC 7 cut(s) 779, 876, 1029, 1172, 1267, 1275, 1278
BmcAI AGTACT 1 cut(s) 593
Bme1390I CCNGG 3 cut(s) 22, 369, 1070
Bme18I GGWCC 2 cut(s) 567, 937
BmgT120I GGNCC 3 cut(s) 567, 937, 1263
BmiI GGNNCC 7 cut(s) 9, 243, 353, 742, 939, 1067, 1191
BmrFI CCNGG 3 cut(s) 22, 369, 1070
BmsI GCATC 5 cut(s) 214, 265, 703, 801, 856
BoxI GACNNNNGTC 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 437
Bpu10I CCTNAGC 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 600
BsaAI YACGTR 1 cut(s) 1011
BsaJI CCNNGG 1 cut(s) 674
BsaXI ACNNNNNCTCC 8 cut(s) 733, 763, 965, 995, 1113, 1143, 1229, 1259
Bsc4I CCNNNNNNNGG 3 cut(s) 661, 680, 859
Bse118I RCCGGY 1 cut(s) 618
Bse1I ACTGG 2 cut(s) 742, 1290
BseBI CCWGG 3 cut(s) 22, 369, 1070
BseDI CCNNGG 1 cut(s) 674
BseGI GGATG 4 cut(s) 112, 416, 443, 871
BseLI CCNNNNNNNGG 3 cut(s) 661, 680, 859
BseMII CTCAG 2 cut(s) 237, 1085
BseNI ACTGG 2 cut(s) 742, 1290
BseRI GAGGAG 4 cut(s) 1013, 1064, 1067, 1253
BseX3I CGGCCG 1 cut(s) 616
BseXI GCAGC 5 cut(s) 764, 886, 1182, 1263, 1285
BseYI CCCAGC 1 cut(s) 1289
BsgI GTGCAG 3 cut(s) 169, 893, 1292
Bsh1236I CGCG 1 cut(s) 994
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 4 cut(s) 25, 618, 852, 1265
BshNI GGYRCC 4 cut(s) 7, 241, 1065, 1189
BsiEI CGRYCG 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 1 cut(s) 619
BslI CCNNNNNNNGG 3 cut(s) 661, 680, 859
BsmAI GTCTC 1 cut(s) 1116
BsmI GAATGC 2 cut(s) 716, 1085
BsnI GGCC 4 cut(s) 25, 618, 852, 1265
Bsp119I TTCGAA 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 3 cut(s) 322, 649, 1180
Bsp19I CCATGG 1 cut(s) 674
BspACI CCGC 4 cut(s) 780, 869, 1028, 1266
BspANI GGCC 4 cut(s) 25, 618, 852, 1265
BspCNI CTCAG 2 cut(s) 238, 1086
BspFNI CGCG 1 cut(s) 994
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 7 cut(s) 9, 243, 353, 742, 939, 1067, 1191
BspPI GGATC 1 cut(s) 317
BspT104I TTCGAA 1 cut(s) 600
BspT107I GGYRCC 4 cut(s) 7, 241, 1065, 1189
BsrFI RCCGGY 1 cut(s) 618
BsrI ACTGG 2 cut(s) 742, 1290
BssAI RCCGGY 1 cut(s) 618
BssECI CCNNGG 1 cut(s) 674
BssMI GATC 3 cut(s) 322, 649, 1180
BssT1I CCWWGG 1 cut(s) 674
Bst2UI CCWGG 3 cut(s) 22, 369, 1070
Bst4CI ACNGT 4 cut(s) 304, 332, 638, 1178
Bst6I CTCTTC 2 cut(s) 1041, 1212
BstBAI YACGTR 1 cut(s) 1011
BstBI TTCGAA 1 cut(s) 600
BstC8I GCNNGC 1 cut(s) 620
BstDEI CTNAG 2 cut(s) 246, 1094
BstDSI CCRYGG 1 cut(s) 674
BstF5I GGATG 4 cut(s) 112, 416, 443, 871
BstFNI CGCG 1 cut(s) 994
BstHHI GCGC 1 cut(s) 923
BstKTI GATC 3 cut(s) 325, 652, 1183
BstMAI GTCTC 1 cut(s) 1116
BstMBI GATC 3 cut(s) 322, 649, 1180
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 1 cut(s) 619
BstNI CCWGG 3 cut(s) 22, 369, 1070
BstNSI RCATGY 1 cut(s) 361
BstPAI GACNNNNGTC 1 cut(s) 235
BstSCI CCNGG 3 cut(s) 20, 367, 1068
BstSFI CTRYAG 1 cut(s) 897
BstUI CGCG 1 cut(s) 994
BstV1I GCAGC 5 cut(s) 764, 886, 1182, 1263, 1285
BstV2I GAAGAC 1 cut(s) 437
BstZI CGGCCG 1 cut(s) 616
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 4 cut(s) 25, 618, 852, 1265
BtgI CCRYGG 1 cut(s) 674
BtsCI GGATG 4 cut(s) 112, 416, 443, 871
BtsIMutI CAGTG 2 cut(s) 461, 1183
Cac8I GCNNGC 1 cut(s) 620
CciI TCATGA 1 cut(s) 532
CfoI GCGC 1 cut(s) 923
Cfr10I RCCGGY 1 cut(s) 618
Cfr13I GGNCC 3 cut(s) 567, 937, 1263
Csp6I GTAC 2 cut(s) 242, 592
CviAII CATG 7 cut(s) 281, 358, 533, 584, 661, 675, 842
CviQI GTAC 2 cut(s) 242, 592
DdeI CTNAG 2 cut(s) 246, 1094
DpnI GATC 3 cut(s) 324, 651, 1182
DpnII GATC 3 cut(s) 322, 649, 1180
DraIII CACNNNGTG 1 cut(s) 1205
DrdI GACNNNNNNGTC 1 cut(s) 195
DseDI GACNNNNNNGTC 1 cut(s) 195
EaeI YGGCCR 3 cut(s) 23, 616, 850
EagI CGGCCG 1 cut(s) 616
Eam1104I CTCTTC 2 cut(s) 1041, 1212
EarI CTCTTC 2 cut(s) 1041, 1212
EclXI CGGCCG 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 674
Eco32I GATATC 1 cut(s) 1158
Eco47I GGWCC 2 cut(s) 567, 937
Eco52I CGGCCG 1 cut(s) 616
Eco57I CTGAAG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 1011
EcoRII CCWGG 3 cut(s) 20, 367, 1068
EcoRV GATATC 1 cut(s) 1158
EcoT14I CCWWGG 1 cut(s) 674
EcoT22I ATGCAT 2 cut(s) 506, 718
ErhI CCWWGG 1 cut(s) 674
FaeI CATG 7 cut(s) 284, 361, 536, 587, 664, 678, 845
FatI CATG 7 cut(s) 280, 357, 532, 583, 660, 674, 841
Fnu4HI GCNGC 7 cut(s) 778, 875, 1028, 1171, 1266, 1274, 1277
FokI GGATG 4 cut(s) 119, 423, 450, 878
Fsp4HI GCNGC 7 cut(s) 778, 875, 1028, 1171, 1266, 1274, 1277
FspBI CTAG 1 cut(s) 771
GlaI GCGC 1 cut(s) 922
GluI GCNGC 7 cut(s) 778, 875, 1028, 1171, 1266, 1274, 1277
GsaI CCCAGC 1 cut(s) 1293
HaeIII GGCC 4 cut(s) 25, 618, 852, 1265
HapII CCGG 1 cut(s) 619
HhaI GCGC 1 cut(s) 923
Hin1II CATG 7 cut(s) 284, 361, 536, 587, 664, 678, 845
Hin6I GCGC 1 cut(s) 921
HinP1I GCGC 1 cut(s) 921
HindIII AAGCTT 2 cut(s) 219, 482
HinfI GANTC 6 cut(s) 644, 980, 989, 1128, 1137, 1241
HpaII CCGG 1 cut(s) 619
HphI GGTGA 3 cut(s) 599, 644, 1123
Hpy166II GTNNAC 1 cut(s) 768
Hpy8I GTNNAC 1 cut(s) 768
HpyAV CCTTC 3 cut(s) 407, 607, 1112
HpyCH4III ACNGT 4 cut(s) 304, 332, 638, 1178
HpyCH4IV ACGT 2 cut(s) 67, 1010
HpyCH4V TGCA 9 cut(s) 87, 150, 278, 288, 504, 716, 814, 874, 1273
HpyF10VI GCNNNNNNNGC 1 cut(s) 619
HpyF3I CTNAG 2 cut(s) 246, 1094
HpySE526I ACGT 2 cut(s) 67, 1010
Hsp92II CATG 7 cut(s) 284, 361, 536, 587, 664, 678, 845
HspAI GCGC 1 cut(s) 921
KpnI GGTACC 1 cut(s) 245
KroI GCCGGC 1 cut(s) 618
KroNI GCCGGC 1 cut(s) 620
Kzo9I GATC 3 cut(s) 322, 649, 1180
Lsp1109I GCAGC 5 cut(s) 764, 886, 1182, 1263, 1285
LweI GCATC 5 cut(s) 214, 265, 703, 801, 856
MaeI CTAG 1 cut(s) 771
MaeII ACGT 2 cut(s) 67, 1010
MaeIII GTNAC 5 cut(s) 50, 80, 175, 823, 1129
MalI GATC 3 cut(s) 324, 651, 1182
MboI GATC 3 cut(s) 322, 649, 1180
MboII GAAGA 6 cut(s) 50, 442, 567, 770, 1058, 1229
MhlI GDGCHC 1 cut(s) 529
MlsI TGGCCA 2 cut(s) 25, 852
MluCI AATT 8 cut(s) 157, 212, 515, 602, 630, 837, 1195, 1226
MluNI TGGCCA 2 cut(s) 25, 852
MlyI GAGTC 5 cut(s) 653, 989, 998, 1137, 1250
MmeI TCCRAC 5 cut(s) 75, 776, 924, 951, 1227
Mox20I TGGCCA 2 cut(s) 25, 852
Mph1103I ATGCAT 2 cut(s) 506, 718
MroNI GCCGGC 1 cut(s) 618
MroXI GAANNNNTTC 3 cut(s) 423, 470, 745
MscI TGGCCA 2 cut(s) 25, 852
MseI TTAA 3 cut(s) 77, 140, 513
MslI CAYNNNNRTG 1 cut(s) 846
Msp20I TGGCCA 2 cut(s) 25, 852
MspA1I CMGCKG 2 cut(s) 1268, 1276
MspI CCGG 1 cut(s) 619
MspR9I CCNGG 3 cut(s) 22, 369, 1070
Mva1269I GAATGC 2 cut(s) 716, 1085
MvaI CCWGG 3 cut(s) 22, 369, 1070
MvnI CGCG 1 cut(s) 994
MwoI GCNNNNNNNGC 1 cut(s) 619
NaeI GCCGGC 1 cut(s) 620
NcoI CCATGG 1 cut(s) 674
NdeII GATC 3 cut(s) 322, 649, 1180
NgoMIV GCCGGC 1 cut(s) 618
NlaIII CATG 7 cut(s) 284, 361, 536, 587, 664, 678, 845
NlaIV GGNNCC 7 cut(s) 9, 243, 353, 742, 939, 1067, 1191
NmeAIII GCCGAG 1 cut(s) 594
NmuCI GTSAC 4 cut(s) 80, 175, 823, 1129
NsiI ATGCAT 2 cut(s) 506, 718
NspI RCATGY 1 cut(s) 361
NspV TTCGAA 1 cut(s) 600
PagI TCATGA 1 cut(s) 532
PciI ACATGT 1 cut(s) 357
PctI GAATGC 2 cut(s) 716, 1085
PdiI GCCGGC 1 cut(s) 620
PdmI GAANNNNTTC 3 cut(s) 423, 470, 745
PfeI GAWTC 1 cut(s) 1137
PflFI GACNNNGTC 1 cut(s) 1127
PflMI CCANNNNNTGG 2 cut(s) 680, 859
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 7 cut(s) 779, 876, 1029, 1172, 1267, 1275, 1278
PleI GAGTC 5 cut(s) 652, 988, 997, 1136, 1249
PmaCI CACGTG 1 cut(s) 1011
PmlI CACGTG 1 cut(s) 1011
PpsI GAGTC 5 cut(s) 652, 988, 997, 1136, 1249
Ppu21I YACGTR 1 cut(s) 1011
PscI ACATGT 1 cut(s) 357
PshAI GACNNNNGTC 1 cut(s) 235
Psp6I CCWGG 3 cut(s) 20, 367, 1068
PspCI CACGTG 1 cut(s) 1011
PspFI CCCAGC 1 cut(s) 1289
PspGI CCWGG 3 cut(s) 20, 367, 1068
PspN4I GGNNCC 7 cut(s) 9, 243, 353, 742, 939, 1067, 1191
PspPI GGNCC 3 cut(s) 567, 937, 1263
PsyI GACNNNGTC 1 cut(s) 1127
PvuII CAGCTG 1 cut(s) 1276
RsaI GTAC 2 cut(s) 243, 593
RsaNI GTAC 2 cut(s) 242, 592
RseI CAYNNNNRTG 1 cut(s) 846
SaqAI TTAA 3 cut(s) 77, 140, 513
SatI GCNGC 7 cut(s) 778, 875, 1028, 1171, 1266, 1274, 1277
Sau3AI GATC 3 cut(s) 322, 649, 1180
Sau96I GGNCC 3 cut(s) 567, 937, 1263
ScaI AGTACT 1 cut(s) 593
SchI GAGTC 5 cut(s) 653, 989, 998, 1137, 1250
ScrFI CCNGG 3 cut(s) 22, 369, 1070
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 5 cut(s) 214, 265, 703, 801, 856
SfcI CTRYAG 1 cut(s) 897
SfuI TTCGAA 1 cut(s) 600
SinI GGWCC 2 cut(s) 567, 937
SmiMI CAYNNNNRTG 1 cut(s) 846
SpeI ACTAGT 1 cut(s) 770
Sse9I AATT 8 cut(s) 157, 212, 515, 602, 630, 837, 1195, 1226
SsiI CCGC 4 cut(s) 780, 869, 1028, 1266
SspI AATATT 1 cut(s) 44
SspMI CTAG 1 cut(s) 771
StyD4I CCNGG 3 cut(s) 20, 367, 1068
StyI CCWWGG 1 cut(s) 674
TaaI ACNGT 4 cut(s) 304, 332, 638, 1178
TaiI ACGT 2 cut(s) 70, 1013
TaqI TCGA 4 cut(s) 36, 187, 257, 600
TaqII GACCGA 1 cut(s) 1049
TasI AATT 8 cut(s) 157, 212, 515, 602, 630, 837, 1195, 1226
TatI WGTACW 1 cut(s) 591
TauI GCSGC 2 cut(s) 1030, 1268
TfiI GAWTC 1 cut(s) 1137
Tru1I TTAA 3 cut(s) 77, 140, 513
Tru9I TTAA 3 cut(s) 77, 140, 513
TscAI CASTG 2 cut(s) 468, 1183
TseFI GTSAC 4 cut(s) 80, 175, 823, 1129
TseI GCWGC 5 cut(s) 777, 874, 1170, 1273, 1276
Tsp45I GTSAC 4 cut(s) 80, 175, 823, 1129
TspDTI ATGAA 4 cut(s) 117, 243, 649, 830
TspGWI ACGGA 1 cut(s) 950
TspRI CASTG 2 cut(s) 468, 1183
Tth111I GACNNNGTC 1 cut(s) 1127
Van91I CCANNNNNTGG 2 cut(s) 680, 859
VpaK11BI GGWCC 2 cut(s) 567, 937
XapI RAATTY 4 cut(s) 515, 602, 630, 1195
XceI RCATGY 1 cut(s) 361
XmnI GAANNNNTTC 3 cut(s) 423, 470, 745
XspI CTAG 1 cut(s) 771
ZrmI AGTACT 1 cut(s) 593
Zsp2I ATGCAT 2 cut(s) 506, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.