Rorug01G0392800

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000067
Physical Location & Seq
Forward (+)
50342556 .. 50348264
5709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0392800.1

Sequence Viewer

Length: 3390 bp
ATGATACTCTGTCCACACAGAATCTATGCTCAAGCAGTCACAGCTTACCTGTTCATTTTGCCTTTTTTTGGTCTGGGCCCCCCTCTCACTCACCTGTTCGTTGAGTCGAGAAAGAACCCAACTTTTGTGTTTGATATTTTTCTTTCGATGCCTACGCCGGTTTCCACGGCCAGGCAATGCTTAACTCCGGAGGCGGCCCACGCGCTCGACGAGGCGGTGTCCGTCGCGCGCCGGAGAGGCCACGCGCAGACCACTTCCCTCCACGCAATCTCCGCCCTCCTCTCTCTCCCCAACTCCGCCCTACGCGAGGCCTGCGCGCGTGCCCGCAACGCCGCCTACTCGCCGCGGCTCCAGTTCAAGGCGCTCGAGCTCTGCCTGAGCGTCTCGCTTGACCGGGTCTCCTCGACCCAGCTCAGCGACGACCCGCCCGTTTCGAACTCGCTCATGGCCGCCATCAAGCGGTCTCAGGCCAACCAGAGGCGGCAGCCGGAGAACTACCACCTCTACCATCACCTCCAGCAGCAGCAGCCGTCCATGTCCTGCGTTAAAGTGGAGCTCCAGCACCTGATTCTCTCTATTCTCGACGACCCGGTCGTCAGTCGGGTCTTCGGCGAAGCGGGTTTCCGGAGCTCCGAACTGAGGCTCGCTATTCTCCGCCCTTTTCCTCACCTCCTCAGATACTCCCGCTCCCAGGGGCATCCTCCTCCTCCTCCTCCTCTGTTTCTCTGCAATCCGGACCCGGGTCCGGGTCCGGGTCGTCGCCGGCCCGTTTTCCCCTTCTCGGGTTTCCCCGACGGAGACGAGAATTGTCGGAGAATTGGAGAAGTTCTAGGGAGGAATAGAAATCCTCTGCTTGTGGGTGTATGTGCTTACGATGCTCTTCACATCTTCATAGGCTCGTTAACTAAAGATGGGATTTTGCCGGTGGAGCTATCCGGGCTGAGTTCAATCTCGATCGAAAAGGAGTTATCGAAGTTCACAACGATCCATTGCGACAGTGGGTGCTTGAATTCGAGGCTGAGGGAGGTGGGGGAGTTGGCAGAGCAGTGTTTGGGACCTGGAATTGTTTTGAATATTGGAGACTTGAAGATGTTCGTTGCTGAAGACTCTTTGGGTGACTCGGTGAGCTATGCGGTTGGTCAGTTGACGAGGTTGGTGGAGCTTCACCGTGGAAGAGTCTGGTTGATTGGCGCTACGGCTAGCTATGGGAGCTACCTGAAGTTTGTGGGTATGTTTCCGACGGTCGAAAAAGACTGGGACTTGCAGCTTCTGCCGATCACTTCGCTTGGAGCTGAATCATGTCCAAGGTCCAGCTTGATGGAGTCATTTGTTCCATTTGGTGGGTTCTTTTCAGCACCTTCTGACCCAAAGCTTCCATTAAGCTGTTCAAATCGGTGCCTTCCCTGCAATCATCAGTGCAATGAAATATATGAGCAAGAAGTATATGCTGTTCCAAAGAAAGGCTTTTTTGCTTCAGTGACAGGTCAGCACCAAGCTAGCTTGCCTTCATGGATGCAGATGGCTCCACTTGGCCCAAACAAGGGGTCGGATATGAAGACCAAAGACGATGGAGTGCTATCGAGTTCCAAAGTTACAGGACTGCAAAGGAAAGGGGATAATACACATGAATCTCACCCCCCACCTTTAGCAAACTTGTTTCCAACTATAGTGGGCTTTGAGTCTGCTGAAGACAAGAAGCACAATCACAGCAACAAGACCAATATTTCTTCAAATGAAAATTCATGCATCCCCGTAGATGTGCAAGAGATATCCACATCTCAGTCCAGCGTTCCTCCGAAGGCTAAGAGTGAAAGTTTCTCCTCTGGAGTATGGGAAAAACCTACAAAAGATGAAGATATTGAATCGGGTAGTGTTAAGTCCTCTTACAGTTTGTCCAATTCAAGCATTGTTGAGGGTAGCCGAACATCTCCAACATCTTCGACTTCTGTGACAACAGATTTAGGATTAGGAATTTGCTCTTCTCCTGCTAGTAAGTTGAACTTAAATCTGGATGAAGGACGTCAACATGACATTTCAGGTTTCTCTTCTTCTGATGTAGATTTATTCAATGGCAATTCCTCTATTTATACTGCTCAGTCATCATTCTGCTCAAGTCCTGACAAACATGGGCATTTTGATCCAAGTGATGTCAAGATGCTTTTCAGAGCCCTCTTTGAGAGAGTGGGCTGGCAAACTGAAGCTATAATTGCCATTAGCCAACGAATAGTTCATTGCCGCTCAAGAAGTGAACATCAGACTGGAGCTAGGCACAGAAGGGATATGTGGTTCAACTTTGTTGGACCAGATAGGTATGGTAAAAAGAAAATTGCTAGTGTGCTTGCTGAGGTATTATATGGGAGCCAGAAACAATTGATCTGTGTGGATCTGAATTCTCAGGATGGGATGGTGCATTCAGACACAATGTTTGGTTGTCAAGTGTTGAATGGTTATGATGCAAAGTATAGAGGTAAGACAGTTGTTGATTATGTTGCTGGAGAACTGTGCAAGAAACCATTGTCCATTGTCTTCCTAGAAAATGTAGACAAGGCTGATGTCGTGGCTCAAAATAGTTTGTCCCAGGCTGTTTTGACCGGTAAATTTTCAGATTCCCATGGAAGACAAGTCAGCACAAGTAATGCAATGTTTATTACAACTACAGAAAAGGGCTGCAGCATTCTCACTTCTAAAAAGGCACCTTCCAACTATTCCGAGGAAAGAATCTCACAAGCAAAAGGGTGGCCATTGCAGATTACAGTTGAATGCGCGCTTGAAGGCATTACAGTAAGCCAAAACTGGAGGACATCCTCCAATACAACTAAAGAAAGCATCCCTCATTTTCTGAACAAAAGGAAGCTGTCTGGCACAGATGAACCTCTAGAGCTAGTCTCAGAGACGAGTAAACGGCCTAACAAAATGTCGACTAGGTATCTGGATCTCAACCTTCCAGCTGAAGAGAATGCAGTGCAACGCCTAGATGATGAGACCTCCGAAAATGACTGCTTCTCTGAAAATTCCAATTCCTGGTTGCAAGAATTCACCGATCAGGTGGATGAAACAGTGGCATTCAAGCCGGTTGATTTCGATGCACTTGCTGAGAAAATATCAAAGGAGATCAAAAACAGTTTCCACAAGCTTGTTGGTTCAGACTGTTTGCTAGAAATCGACACACAAGTCATAGAACAACTACTTGCAGCCGCATATTTGTCAGACAGGTACAGGGTGGTGGAAGATTGGGTGGAGCAAGTGTTGAGCAGAGGATTTGCAGAGGTTCAGAAGAGACATAACCTCAATGCTCATACTACTGTAAAACTTAAACCTTGCGAGGGCATCTGCTTGGAGGAGGAGTCATCACAGGAAAATTACCTCCCACCTAAAATCATACTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

1129

Amino Acids

124.56

Weight (kDa)

6.27

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NBD_SMAX1 PF23569 269 - 430 1.1e-14 SMAX1 nucleotide binding domain
AAA_2 PF07724 763 - 899 2.1e-12 AAA domain (Cdc48 subfamily)
AAA_lid_SMAX1 PF26587 1026 - 1109 2.3e-32 SMAX1-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 590, 593, 3170
AatII GACGTC 1 cut(s) 2023
AccB1I GGYRCC 2 cut(s) 1395, 2692
AccB7I CCANNNNNTGG 2 cut(s) 1340, 3021
AccBSI CCGCTC 2 cut(s) 687, 2238
AccI GTMKAC 2 cut(s) 2541, 2918
AccII CGCG 9 cut(s) 203, 227, 229, 245, 306, 317, 319, 346, 2765
AccIII TCCGGA 3 cut(s) 187, 624, 733
AclWI GGATC 4 cut(s) 979, 2132, 2391, 2940
AcoI YGGCCR 3 cut(s) 168, 447, 2738
AcsI RAATTY 7 cut(s) 1009, 1738, 1971, 2389, 2597, 3010, 3032
AcuI CTGAAG 6 cut(s) 1122, 1238, 1458, 1707, 2217, 2970
AcyI GRCGYC 1 cut(s) 2020
AfaI GTAC 1 cut(s) 3215
AgeI ACCGGT 1 cut(s) 2591
AjnI CCWGG 5 cut(s) 170, 690, 1057, 2577, 3020
AjuI GAANNNNNNNTTGG 2 cut(s) 2211, 2243
AloI GAACNNNNNNTCC 2 cut(s) 2270, 2302
Alw21I GWGCWC 3 cut(s) 372, 558, 632
Alw26I GTCTC 9 cut(s) 388, 403, 468, 792, 1074, 2885, 2890, 2975, 3271
AlwI GGATC 4 cut(s) 979, 2132, 2391, 2940
AlwNI CAGNNNCTG 2 cut(s) 565, 1270
Ama87I CYCGRG 3 cut(s) 365, 739, 781
Aor13HI TCCGGA 3 cut(s) 187, 624, 733
ApaI GGGCCC 1 cut(s) 80
ApeKI GCWGC 8 cut(s) 484, 520, 523, 526, 1264, 2667, 2670, 3191
ApoI RAATTY 7 cut(s) 1009, 1738, 1971, 2389, 2597, 3010, 3032
ArsI GACNNNNNNTTYG 4 cut(s) 1529, 1561, 2408, 2440
AsiGI ACCGGT 1 cut(s) 2591
Asp700I GAANNNNTTC 1 cut(s) 1091
AsuC2I CCSGG 7 cut(s) 395, 590, 740, 741, 747, 753, 937
AsuHPI GGTGA 8 cut(s) 83, 503, 659, 1127, 1135, 1157, 1625, 3028
AsuII TTCGAA 1 cut(s) 434
AsuNHI GCTAGC 2 cut(s) 1199, 1496
AvaI CYCGRG 3 cut(s) 365, 739, 781
AvaII GGWCC 6 cut(s) 736, 743, 749, 1055, 1308, 2300
BaeGI GKGCMC 2 cut(s) 80, 325
BalI TGGCCA 1 cut(s) 2740
BanI GGYRCC 2 cut(s) 1395, 2692
BanII GRGCYC 5 cut(s) 80, 372, 558, 632, 2170
BbsI GAAGAC 6 cut(s) 598, 1110, 1562, 1695, 2518, 2623
Bbv12I GWGCWC 3 cut(s) 372, 558, 632
BbvCI CCTCAGC 2 cut(s) 1019, 2343
BbvI GCAGC 8 cut(s) 496, 532, 535, 538, 1276, 2654, 2682, 3203
BccI CCATC 8 cut(s) 461, 516, 905, 1312, 1513, 1562, 2393, 2398
BceAI ACGGC 4 cut(s) 183, 514, 1212, 2918
BcgI CGANNNNNNTGC 2 cut(s) 3071, 3105
BciT130I CCWGG 5 cut(s) 172, 692, 1059, 2579, 3022
BcnI CCSGG 7 cut(s) 395, 590, 740, 741, 747, 753, 937
BcoDI GTCTC 9 cut(s) 388, 403, 468, 792, 1074, 2885, 2890, 2975, 3271
BfmI CTRYAG 3 cut(s) 1665, 2655, 2668
BfoI RGCGCY 2 cut(s) 365, 1194
BglI GCCNNNNNGGC 1 cut(s) 237
BlpI GCTNAGC 1 cut(s) 413
Bme18I GGWCC 6 cut(s) 736, 743, 749, 1055, 1308, 2300
BmeT110I CYCGRG 3 cut(s) 365, 739, 781
BmrI ACTGGG 1 cut(s) 1264
BmtI GCTAGC 2 cut(s) 1203, 1500
BmuI ACTGGG 1 cut(s) 1264
BoxI GACNNNNGTC 1 cut(s) 741
BpiI GAAGAC 6 cut(s) 598, 1110, 1562, 1695, 2518, 2623
BplI GAGNNNNNCTC 2 cut(s) 2870, 2902
BpmI CTGGAG 7 cut(s) 335, 500, 542, 1845, 2280, 2514, 2815
Bpu10I CCTNAGC 3 cut(s) 377, 1019, 2343
Bpu1102I GCTNAGC 1 cut(s) 413
Bpu14I TTCGAA 1 cut(s) 434
BpuEI CTTGAG 3 cut(s) 15, 2095, 2224
BpuMI CCSGG 7 cut(s) 395, 590, 740, 741, 747, 753, 937
BsaHI GRCGYC 1 cut(s) 2020
BsaI GGTCTC 3 cut(s) 403, 468, 2975
BsaWI WCCGGW 4 cut(s) 187, 624, 733, 2591
Bse118I RCCGGY 5 cut(s) 157, 762, 922, 2591, 3070
Bse1I ACTGG 4 cut(s) 352, 1259, 2263, 2798
Bse3DI GCAATG 6 cut(s) 182, 988, 1426, 2230, 2646, 2741
BseAI TCCGGA 3 cut(s) 187, 624, 733
BseBI CCWGG 5 cut(s) 172, 692, 1059, 2579, 3022
BseGI GGATG 9 cut(s) 697, 1518, 1746, 2017, 2404, 2409, 2801, 2826, 3055
BseMI GCAATG 6 cut(s) 182, 988, 1426, 2230, 2646, 2741
BseNI ACTGG 4 cut(s) 352, 1259, 2263, 2798
BsePI GCGCGC 3 cut(s) 227, 315, 2763
BseSI GKGCMC 2 cut(s) 80, 325
BseXI GCAGC 8 cut(s) 496, 532, 535, 538, 1276, 2654, 2682, 3203
BseYI CCCAGC 1 cut(s) 408
Bsh1236I CGCG 9 cut(s) 203, 227, 229, 245, 306, 317, 319, 346, 2765
Bsh1285I CGRYCG 3 cut(s) 594, 957, 1245
BshNI GGYRCC 2 cut(s) 1395, 2692
BshTI ACCGGT 1 cut(s) 2591
BsiEI CGRYCG 3 cut(s) 594, 957, 1245
BsiHKAI GWGCWC 3 cut(s) 372, 558, 632
BsiHKCI CYCGRG 3 cut(s) 365, 739, 781
BslFI GGGAC 3 cut(s) 1068, 1271, 2560
BsmAI GTCTC 9 cut(s) 388, 403, 468, 792, 1074, 2885, 2890, 2975, 3271
BsmBI CGTCTC 3 cut(s) 388, 792, 2885
BsmFI GGGAC 3 cut(s) 1068, 1271, 2560
BsmI GAATGC 5 cut(s) 2410, 2673, 2765, 2962, 3062
Bso31I GGTCTC 3 cut(s) 403, 468, 2975
BsoBI CYCGRG 3 cut(s) 365, 739, 781
Bsp119I TTCGAA 1 cut(s) 434
Bsp120I GGGCCC 1 cut(s) 76
Bsp1286I GDGCHC 6 cut(s) 80, 325, 372, 558, 632, 2170
Bsp13I TCCGGA 3 cut(s) 187, 624, 733
Bsp143I GATC 9 cut(s) 954, 984, 1275, 2137, 2373, 2383, 2932, 3040, 3111
Bsp1720I GCTNAGC 1 cut(s) 413
Bsp19I CCATGG 1 cut(s) 2611
BspEI TCCGGA 3 cut(s) 187, 624, 733
BspFNI CGCG 9 cut(s) 203, 227, 229, 245, 306, 317, 319, 346, 2765
BspMAI CTGCAG 1 cut(s) 2672
BspOI GCTAGC 2 cut(s) 1203, 1500
BspPI GGATC 4 cut(s) 979, 2132, 2391, 2940
BspQI GCTCTTC 2 cut(s) 885, 1984
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 2 cut(s) 1395, 2692
BspTNI GGTCTC 3 cut(s) 403, 468, 2975
BsrBI CCGCTC 2 cut(s) 687, 2238
BsrDI GCAATG 6 cut(s) 182, 988, 1426, 2230, 2646, 2741
BsrFI RCCGGY 5 cut(s) 157, 762, 922, 2591, 3070
BsrI ACTGG 4 cut(s) 352, 1259, 2263, 2798
BssAI RCCGGY 5 cut(s) 157, 762, 922, 2591, 3070
BssHII GCGCGC 3 cut(s) 227, 315, 2763
BssMI GATC 9 cut(s) 954, 984, 1275, 2137, 2373, 2383, 2932, 3040, 3111
BssNI GRCGYC 1 cut(s) 2020
BssT1I CCWWGG 2 cut(s) 1304, 2611
Bst2UI CCWGG 5 cut(s) 172, 692, 1059, 2579, 3022
Bst6I CTCTTC 6 cut(s) 885, 1168, 1984, 2050, 2946, 3269
BstACI GRCGYC 1 cut(s) 2020
BstAPI GCANNNNNTGC 1 cut(s) 1270
BstBI TTCGAA 1 cut(s) 434
BstDSI CCRYGG 4 cut(s) 165, 344, 1168, 2611
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 9 cut(s) 697, 1518, 1746, 2017, 2404, 2409, 2801, 2826, 3055
BstFNI CGCG 9 cut(s) 203, 227, 229, 245, 306, 317, 319, 346, 2765
BstH2I RGCGCY 2 cut(s) 365, 1194
BstKTI GATC 9 cut(s) 957, 987, 1278, 2140, 2376, 2386, 2935, 3043, 3114
BstMAI GTCTC 9 cut(s) 388, 403, 468, 792, 1074, 2885, 2890, 2975, 3271
BstMBI GATC 9 cut(s) 954, 984, 1275, 2137, 2373, 2383, 2932, 3040, 3111
BstMCI CGRYCG 3 cut(s) 594, 957, 1245
BstNI CCWGG 5 cut(s) 172, 692, 1059, 2579, 3022
BstPAI GACNNNNGTC 1 cut(s) 741
BstSFI CTRYAG 3 cut(s) 1665, 2655, 2668
BstSLI GKGCMC 2 cut(s) 80, 325
BstUI CGCG 9 cut(s) 203, 227, 229, 245, 306, 317, 319, 346, 2765
BstV1I GCAGC 8 cut(s) 496, 532, 535, 538, 1276, 2654, 2682, 3203
BstV2I GAAGAC 6 cut(s) 598, 1110, 1562, 1695, 2518, 2623
BstX2I RGATCY 2 cut(s) 2383, 2932
BstXI CCANNNNNNTGG 1 cut(s) 1318
BstYI RGATCY 2 cut(s) 2383, 2932
BtgI CCRYGG 4 cut(s) 165, 344, 1168, 2611
BtsCI GGATG 9 cut(s) 697, 1518, 1746, 2017, 2404, 2409, 2801, 2826, 3055
BtsI GCAGTG 2 cut(s) 1052, 2967
BtsIMutI CAGTG 6 cut(s) 1003, 1052, 1421, 1482, 2967, 3063
CaiI CAGNNNCTG 2 cut(s) 565, 1270
Cfr10I RCCGGY 5 cut(s) 157, 762, 922, 2591, 3070
Cfr42I CCGCGG 1 cut(s) 347
Cfr9I CCCGGG 1 cut(s) 739
CseI GACGC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 3214
CspAI ACCGGT 1 cut(s) 2591
CspCI CAANNNNNGTGG 2 cut(s) 1650, 1685
CviAII CATG 9 cut(s) 445, 535, 1299, 1509, 1625, 1743, 2027, 2126, 2612
CviQI GTAC 1 cut(s) 3214
DpnI GATC 9 cut(s) 956, 986, 1277, 2139, 2375, 2385, 2934, 3042, 3113
DpnII GATC 9 cut(s) 954, 984, 1275, 2137, 2373, 2383, 2932, 3040, 3111
DrdI GACNNNNNNGTC 3 cut(s) 590, 593, 3170
DseDI GACNNNNNNGTC 3 cut(s) 590, 593, 3170
EaeI YGGCCR 3 cut(s) 168, 447, 2738
Eam1104I CTCTTC 6 cut(s) 885, 1168, 1984, 2050, 2946, 3269
EarI CTCTTC 6 cut(s) 885, 1168, 1984, 2050, 2946, 3269
EciI GGCGGA 3 cut(s) 262, 286, 644
Ecl136II GAGCTC 3 cut(s) 370, 556, 630
Eco130I CCWWGG 2 cut(s) 1304, 2611
Eco147I AGGCCT 1 cut(s) 311
Eco24I GRGCYC 5 cut(s) 80, 372, 558, 632, 2170
Eco31I GGTCTC 3 cut(s) 403, 468, 2975
Eco32I GATATC 1 cut(s) 1770
Eco47I GGWCC 6 cut(s) 736, 743, 749, 1055, 1308, 2300
Eco53kI GAGCTC 3 cut(s) 370, 556, 630
Eco57I CTGAAG 6 cut(s) 1122, 1238, 1458, 1707, 2217, 2970
Eco88I CYCGRG 3 cut(s) 365, 739, 781
EcoICRI GAGCTC 3 cut(s) 370, 556, 630
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoO109I RGGNCCY 2 cut(s) 77, 1055
EcoRI GAATTC 3 cut(s) 1009, 2389, 3032
EcoRII CCWGG 5 cut(s) 170, 690, 1057, 2577, 3020
EcoRV GATATC 1 cut(s) 1770
EcoT14I CCWWGG 2 cut(s) 1304, 2611
EcoT22I ATGCAT 1 cut(s) 1748
EcoT38I GRGCYC 5 cut(s) 80, 372, 558, 632, 2170
ErhI CCWWGG 2 cut(s) 1304, 2611
Esp3I CGTCTC 3 cut(s) 388, 792, 2885
FaeI CATG 9 cut(s) 448, 538, 1302, 1512, 1628, 1746, 2030, 2129, 2615
FalI AAGNNNNNCTT 4 cut(s) 1448, 1480, 1985, 2017
FaqI GGGAC 3 cut(s) 1068, 1271, 2560
FatI CATG 9 cut(s) 444, 534, 1298, 1508, 1624, 1742, 2026, 2125, 2611
FauI CCCGC 4 cut(s) 332, 432, 610, 692
FblI GTMKAC 2 cut(s) 2541, 2918
FokI GGATG 9 cut(s) 684, 1525, 1733, 2024, 2411, 2416, 2788, 2813, 3062
FriOI GRGCYC 5 cut(s) 80, 372, 558, 632, 2170
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 7 cut(s) 335, 500, 542, 1845, 2280, 2514, 2815
HaeII RGCGCY 2 cut(s) 365, 1194
HgaI GACGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 2020
Hin1II CATG 9 cut(s) 448, 538, 1302, 1512, 1628, 1746, 2030, 2129, 2615
HincII GTYRAC 4 cut(s) 903, 1146, 2024, 2919
HindII GTYRAC 4 cut(s) 903, 1146, 2024, 2919
HindIII AAGCTT 2 cut(s) 1370, 3131
HpaI GTTAAC 1 cut(s) 903
HphI GGTGA 8 cut(s) 83, 503, 659, 1127, 1135, 1157, 1625, 3028
Hpy166II GTNNAC 9 cut(s) 14, 903, 978, 1146, 2024, 2249, 2542, 2900, 2919
Hpy8I GTNNAC 9 cut(s) 14, 903, 978, 1146, 2024, 2249, 2542, 2900, 2919
Hpy99I CGWCG 7 cut(s) 212, 227, 422, 587, 762, 797, 1243
HpyCH4IV ACGT 1 cut(s) 2020
HpySE526I ACGT 1 cut(s) 2020
Hsp92I GRCGYC 1 cut(s) 2020
Hsp92II CATG 9 cut(s) 448, 538, 1302, 1512, 1628, 1746, 2030, 2129, 2615
Kpn2I TCCGGA 3 cut(s) 187, 624, 733
KroI GCCGGC 1 cut(s) 762
KroNI GCCGGC 1 cut(s) 764
KspAI GTTAAC 1 cut(s) 903
KspI CCGCGG 1 cut(s) 347
Kzo9I GATC 9 cut(s) 954, 984, 1275, 2137, 2373, 2383, 2932, 3040, 3111
LguI GCTCTTC 2 cut(s) 885, 1984
Lsp1109I GCAGC 8 cut(s) 496, 532, 535, 538, 1276, 2654, 2682, 3203
MaeII ACGT 1 cut(s) 2020
MaeIII GTNAC 5 cut(s) 37, 1115, 1477, 1591, 1948
MalI GATC 9 cut(s) 956, 986, 1277, 2139, 2375, 2385, 2934, 3042, 3113
MbiI CCGCTC 2 cut(s) 687, 2238
MboI GATC 9 cut(s) 954, 984, 1275, 2137, 2373, 2383, 2932, 3040, 3111
MfeI CAATTG 1 cut(s) 2369
MflI RGATCY 2 cut(s) 2383, 2932
MhlI GDGCHC 6 cut(s) 80, 325, 372, 558, 632, 2170
MlsI TGGCCA 1 cut(s) 2740
MluNI TGGCCA 1 cut(s) 2740
MlyI GAGTC 7 cut(s) 113, 1100, 1112, 1185, 1331, 1688, 3353
MmeI TCCRAC 7 cut(s) 791, 1262, 1527, 1685, 1955, 2278, 2724
Mox20I TGGCCA 1 cut(s) 2740
Mph1103I ATGCAT 1 cut(s) 1748
MroI TCCGGA 3 cut(s) 187, 624, 733
MroNI GCCGGC 1 cut(s) 762
MroXI GAANNNNTTC 1 cut(s) 1091
MscI TGGCCA 1 cut(s) 2740
MseI TTAA 7 cut(s) 182, 546, 902, 1379, 1875, 2003, 3312
Msp20I TGGCCA 1 cut(s) 2740
MspA1I CMGCKG 2 cut(s) 346, 2948
MunI CAATTG 1 cut(s) 2369
Mva1269I GAATGC 5 cut(s) 2410, 2673, 2765, 2962, 3062
MvaI CCWGG 5 cut(s) 172, 692, 1059, 2579, 3022
MvnI CGCG 9 cut(s) 203, 227, 229, 245, 306, 317, 319, 346, 2765
NaeI GCCGGC 1 cut(s) 764
NciI CCSGG 7 cut(s) 395, 590, 740, 741, 747, 753, 937
NcoI CCATGG 1 cut(s) 2611
NdeII GATC 9 cut(s) 954, 984, 1275, 2137, 2373, 2383, 2932, 3040, 3111
NgoMIV GCCGGC 1 cut(s) 762
NheI GCTAGC 2 cut(s) 1199, 1496
NlaIII CATG 9 cut(s) 448, 538, 1302, 1512, 1628, 1746, 2030, 2129, 2615
NmuCI GTSAC 4 cut(s) 37, 1115, 1477, 1948
NsiI ATGCAT 1 cut(s) 1748
NspV TTCGAA 1 cut(s) 434
PaeR7I CTCGAG 1 cut(s) 365
PasI CCCWGGG 1 cut(s) 691
PauI GCGCGC 3 cut(s) 227, 315, 2763
PceI AGGCCT 1 cut(s) 311
PciSI GCTCTTC 2 cut(s) 885, 1984
PcsI WCGNNNNNNNCGW 3 cut(s) 207, 426, 591
PctI GAATGC 5 cut(s) 2410, 2673, 2765, 2962, 3062
PdiI GCCGGC 1 cut(s) 764
PdmI GAANNNNTTC 1 cut(s) 1091
PfeI GAWTC 7 cut(s) 21, 568, 1295, 1628, 1862, 2606, 2718
PflFI GACNNNGTC 2 cut(s) 395, 590
PflMI CCANNNNNTGG 2 cut(s) 1340, 3021
PinAI ACCGGT 1 cut(s) 2591
Ple19I CGATCG 1 cut(s) 957
PleI GAGTC 7 cut(s) 112, 1100, 1112, 1184, 1330, 1687, 3352
PpsI GAGTC 7 cut(s) 112, 1100, 1112, 1184, 1330, 1687, 3352
PpuMI RGGWCCY 1 cut(s) 1055
PshAI GACNNNNGTC 1 cut(s) 741
Psp124BI GAGCTC 3 cut(s) 372, 558, 632
Psp5II RGGWCCY 1 cut(s) 1055
Psp6I CCWGG 5 cut(s) 170, 690, 1057, 2577, 3020
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 5 cut(s) 170, 690, 1057, 2577, 3020
PspOMI GGGCCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 1055
PspXI VCTCGAGB 1 cut(s) 365
PsrI GAACNNNNNNTAC 2 cut(s) 1434, 1466
PstI CTGCAG 1 cut(s) 2672
PstNI CAGNNNCTG 2 cut(s) 565, 1270
PsuI RGATCY 2 cut(s) 2383, 2932
PsyI GACNNNGTC 2 cut(s) 395, 590
PteI GCGCGC 3 cut(s) 227, 315, 2763
PvuI CGATCG 1 cut(s) 957
PvuII CAGCTG 1 cut(s) 2948
RsaI GTAC 1 cut(s) 3215
RsaNI GTAC 1 cut(s) 3214
SacI GAGCTC 3 cut(s) 372, 558, 632
SacII CCGCGG 1 cut(s) 347
SalI GTCGAC 1 cut(s) 2917
SapI GCTCTTC 2 cut(s) 885, 1984
SaqAI TTAA 7 cut(s) 182, 546, 902, 1379, 1875, 2003, 3312
Sau3AI GATC 9 cut(s) 954, 984, 1275, 2137, 2373, 2383, 2932, 3040, 3111
SchI GAGTC 7 cut(s) 113, 1100, 1112, 1185, 1331, 1688, 3353
SduI GDGCHC 6 cut(s) 80, 325, 372, 558, 632, 2170
SfcI CTRYAG 3 cut(s) 1665, 2655, 2668
Sfr274I CTCGAG 1 cut(s) 365
Sfr303I CCGCGG 1 cut(s) 347
SfuI TTCGAA 1 cut(s) 434
SgrBI CCGCGG 1 cut(s) 347
SinI GGWCC 6 cut(s) 736, 743, 749, 1055, 1308, 2300
SlaI CTCGAG 1 cut(s) 365
SmaI CCCGGG 1 cut(s) 741
SmlI CTYRAG 4 cut(s) 30, 365, 2110, 2239
SmoI CTYRAG 4 cut(s) 30, 365, 2110, 2239
SseBI AGGCCT 1 cut(s) 311
SspI AATATT 2 cut(s) 1075, 1723
SstI GAGCTC 3 cut(s) 372, 558, 632
StuI AGGCCT 1 cut(s) 311
StyI CCWWGG 2 cut(s) 1304, 2611
TaiI ACGT 1 cut(s) 2023
TauI GCSGC 8 cut(s) 197, 335, 346, 349, 452, 484, 2238, 3197
TfiI GAWTC 7 cut(s) 21, 568, 1295, 1628, 1862, 2606, 2718
Tru1I TTAA 7 cut(s) 182, 546, 902, 1379, 1875, 2003, 3312
Tru9I TTAA 7 cut(s) 182, 546, 902, 1379, 1875, 2003, 3312
TscAI CASTG 6 cut(s) 1003, 1052, 1421, 1482, 2967, 3063
TseFI GTSAC 4 cut(s) 37, 1115, 1477, 1948
TseI GCWGC 8 cut(s) 484, 520, 523, 526, 1264, 2667, 2670, 3191
Tsp45I GTSAC 4 cut(s) 37, 1115, 1477, 1948
TspGWI ACGGA 2 cut(s) 211, 810
TspMI CCCGGG 1 cut(s) 739
TspRI CASTG 6 cut(s) 1003, 1052, 1421, 1482, 2967, 3063
Tth111I GACNNNGTC 2 cut(s) 395, 590
Van91I CCANNNNNTGG 2 cut(s) 1340, 3021
VpaK11BI GGWCC 6 cut(s) 736, 743, 749, 1055, 1308, 2300
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 7 cut(s) 1009, 1738, 1971, 2389, 2597, 3010, 3032
XbaI TCTAGA 1 cut(s) 2875
XcmI CCANNNNNNNNNTGG 2 cut(s) 995, 3134
XhoI CTCGAG 1 cut(s) 365
XmaI CCCGGG 1 cut(s) 739
XmiI GTMKAC 2 cut(s) 2541, 2918
XmnI GAANNNNTTC 1 cut(s) 1091
ZraI GACGTC 1 cut(s) 2021
Zsp2I ATGCAT 1 cut(s) 1748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.