TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 25 - 185 | 7.5e-21 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 257 - 328 | 1.3e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 505 - 614 | 7.9e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 513 - 583 | 5.6e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 581 - 681 | 2.5e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 584 - 670 | 1.3e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_8 | PF13855 | 736 - 791 | 1.4e-06 | Leucine rich repeat |
| C-JID | PF20160 | 865 - 919 | 1.7e-17 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 446 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2783 |
| Acc36I | ACCTGC | 2 cut(s) | 2329, 2346 |
| AccB1I | GGYRCC | 1 cut(s) | 2152 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2867 |
| AccI | GTMKAC | 2 cut(s) | 1353, 2410 |
| AccIII | TCCGGA | 2 cut(s) | 1942, 2294 |
| AciI | CCGC | 5 cut(s) | 132, 973, 2774, 2829, 3115 |
| AclWI | GGATC | 2 cut(s) | 143, 986 |
| AcoI | YGGCCR | 1 cut(s) | 2168 |
| AcsI | RAATTY | 5 cut(s) | 276, 351, 1586, 1740, 2029 |
| AcuI | CTGAAG | 3 cut(s) | 1083, 1505, 1601 |
| AcyI | GRCGYC | 1 cut(s) | 2153 |
| AdeI | CACNNNGTG | 1 cut(s) | 2826 |
| AfaI | GTAC | 4 cut(s) | 1110, 1236, 1501, 2474 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 422, 869, 2068, 2867 |
| AflIII | ACRYGT | 3 cut(s) | 733, 1111, 1356 |
| AjiI | CACGTC | 2 cut(s) | 711, 734 |
| AjnI | CCWGG | 2 cut(s) | 994, 2596 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 665, 697, 2046, 2078 |
| Alw21I | GWGCWC | 3 cut(s) | 1997, 2987, 3029 |
| Alw26I | GTCTC | 9 cut(s) | 717, 913, 1138, 1634, 2441, 2595, 2900, 3126, 3155 |
| Alw44I | GTGCAC | 1 cut(s) | 3025 |
| AlwI | GGATC | 2 cut(s) | 143, 986 |
| Ama87I | CYCGRG | 2 cut(s) | 156, 2427 |
| Aor13HI | TCCGGA | 2 cut(s) | 1942, 2294 |
| AoxI | GGCC | 4 cut(s) | 313, 2059, 2168, 2993 |
| ApaI | GGGCCC | 1 cut(s) | 2997 |
| ApaLI | GTGCAC | 1 cut(s) | 3025 |
| ApeKI | GCWGC | 6 cut(s) | 1569, 1687, 2324, 3003, 3006, 3138 |
| ApoI | RAATTY | 5 cut(s) | 276, 351, 1586, 1740, 2029 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 723, 755 |
| AseI | ATTAAT | 2 cut(s) | 1671, 2348 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 8, 52, 264, 1029, 1866 |
| AspLEI | GCGC | 2 cut(s) | 2155, 2708 |
| AspS9I | GGNCC | 5 cut(s) | 385, 1558, 2872, 2993, 2994 |
| AsuC2I | CCSGG | 2 cut(s) | 2428, 2429 |
| AsuHPI | GGTGA | 5 cut(s) | 932, 1511, 2200, 2530, 2738 |
| AsuII | TTCGAA | 1 cut(s) | 1268 |
| AvaI | CYCGRG | 2 cut(s) | 156, 2427 |
| AvaII | GGWCC | 3 cut(s) | 385, 1558, 2872 |
| BaeGI | GKGCMC | 2 cut(s) | 2997, 3029 |
| BalI | TGGCCA | 1 cut(s) | 2170 |
| BanI | GGYRCC | 1 cut(s) | 2152 |
| BanII | GRGCYC | 1 cut(s) | 2997 |
| BauI | CACGAG | 1 cut(s) | 196 |
| BbsI | GAAGAC | 4 cut(s) | 605, 1931, 2061, 2634 |
| Bbv12I | GWGCWC | 3 cut(s) | 1997, 2987, 3029 |
| BbvI | GCAGC | 6 cut(s) | 1556, 1674, 2336, 2990, 2993, 3125 |
| BceAI | ACGGC | 4 cut(s) | 1071, 2074, 2166, 2641 |
| BciT130I | CCWGG | 2 cut(s) | 996, 2598 |
| BciVI | GTATCC | 1 cut(s) | 3171 |
| BcnI | CCSGG | 2 cut(s) | 2428, 2429 |
| BcoDI | GTCTC | 9 cut(s) | 717, 913, 1138, 1634, 2441, 2595, 2900, 3126, 3155 |
| BfaI | CTAG | 6 cut(s) | 453, 788, 929, 1085, 1901, 3156 |
| BfmI | CTRYAG | 2 cut(s) | 1688, 2322 |
| BfoI | RGCGCY | 1 cut(s) | 2156 |
| BfuAI | ACCTGC | 2 cut(s) | 2329, 2346 |
| BfuI | GTATCC | 1 cut(s) | 3171 |
| BglII | AGATCT | 1 cut(s) | 893 |
| BisI | GCNGC | 6 cut(s) | 1570, 1688, 2325, 3004, 3007, 3139 |
| BlsI | GCNGC | 6 cut(s) | 1571, 1689, 2326, 3005, 3008, 3140 |
| Bme1390I | CCNGG | 4 cut(s) | 996, 2428, 2429, 2598 |
| Bme18I | GGWCC | 3 cut(s) | 385, 1558, 2872 |
| BmeT110I | CYCGRG | 2 cut(s) | 156, 2427 |
| BmgBI | CACGTC | 2 cut(s) | 711, 734 |
| BmgT120I | GGNCC | 5 cut(s) | 385, 1558, 2872, 2993, 2994 |
| BmiI | GGNNCC | 7 cut(s) | 1727, 2154, 2180, 2873, 2995, 2996, 3088 |
| BmrFI | CCNGG | 4 cut(s) | 996, 2428, 2429, 2598 |
| BmrI | ACTGGG | 3 cut(s) | 98, 698, 1998 |
| BmsI | GCATC | 2 cut(s) | 924, 1289 |
| BmuI | ACTGGG | 3 cut(s) | 98, 698, 1998 |
| BpiI | GAAGAC | 4 cut(s) | 605, 1931, 2061, 2634 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2969, 3001 |
| BpmI | CTGGAG | 5 cut(s) | 1142, 1532, 1744, 2090, 3105 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2986 |
| Bpu14I | TTCGAA | 1 cut(s) | 1268 |
| BpuMI | CCSGG | 2 cut(s) | 2428, 2429 |
| Bsa29I | ATCGAT | 1 cut(s) | 393 |
| BsaAI | YACGTR | 1 cut(s) | 1114 |
| BsaHI | GRCGYC | 1 cut(s) | 2153 |
| BsaJI | CCNNGG | 3 cut(s) | 2062, 2427, 3090 |
| BsaWI | WCCGGW | 3 cut(s) | 664, 1942, 2294 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 422, 869, 2068, 2867 |
| Bse1I | ACTGG | 4 cut(s) | 93, 704, 1515, 1993 |
| Bse3DI | GCAATG | 2 cut(s) | 2334, 2421 |
| BseAI | TCCGGA | 2 cut(s) | 1942, 2294 |
| BseBI | CCWGG | 2 cut(s) | 996, 2598 |
| BseCI | ATCGAT | 1 cut(s) | 393 |
| BseDI | CCNNGG | 3 cut(s) | 2062, 2427, 3090 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 422, 869, 2068, 2867 |
| BseMI | GCAATG | 2 cut(s) | 2334, 2421 |
| BseMII | CTCAG | 7 cut(s) | 576, 1452, 2007, 2354, 2469, 3000, 3137 |
| BseNI | ACTGG | 4 cut(s) | 93, 704, 1515, 1993 |
| BseRI | GAGGAG | 3 cut(s) | 171, 1156, 2993 |
| BseSI | GKGCMC | 2 cut(s) | 2997, 3029 |
| BseXI | GCAGC | 6 cut(s) | 1556, 1674, 2336, 2990, 2993, 3125 |
| BsgI | GTGCAG | 3 cut(s) | 612, 1555, 1906 |
| BshFI | GGCC | 4 cut(s) | 315, 2061, 2170, 2995 |
| BshNI | GGYRCC | 1 cut(s) | 2152 |
| BshVI | ATCGAT | 1 cut(s) | 393 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1997, 2987, 3029 |
| BsiHKCI | CYCGRG | 2 cut(s) | 156, 2427 |
| BsiSI | CCGG | 4 cut(s) | 665, 1943, 2295, 2428 |
| BsiWI | CGTACG | 1 cut(s) | 2472 |
| BslFI | GGGAC | 2 cut(s) | 1031, 2885 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 422, 869, 2068, 2867 |
| BsmAI | GTCTC | 9 cut(s) | 717, 913, 1138, 1634, 2441, 2595, 2900, 3126, 3155 |
| BsmBI | CGTCTC | 1 cut(s) | 717 |
| BsmFI | GGGAC | 2 cut(s) | 1031, 2885 |
| BsmI | GAATGC | 2 cut(s) | 1005, 2585 |
| BsnI | GGCC | 4 cut(s) | 315, 2061, 2170, 2995 |
| BsoBI | CYCGRG | 2 cut(s) | 156, 2427 |
| Bsp119I | TTCGAA | 1 cut(s) | 1268 |
| Bsp120I | GGGCCC | 1 cut(s) | 2993 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1997, 2987, 2997, 3029 |
| Bsp13I | TCCGGA | 2 cut(s) | 1942, 2294 |
| Bsp1407I | TGTACA | 2 cut(s) | 1234, 1499 |
| Bsp143I | GATC | 5 cut(s) | 135, 893, 991, 1675, 2212 |
| BspACI | CCGC | 5 cut(s) | 132, 973, 2774, 2829, 3115 |
| BspANI | GGCC | 4 cut(s) | 315, 2061, 2170, 2995 |
| BspCNI | CTCAG | 7 cut(s) | 575, 1453, 2008, 2355, 2470, 2999, 3136 |
| BspDI | ATCGAT | 1 cut(s) | 393 |
| BspEI | TCCGGA | 2 cut(s) | 1942, 2294 |
| BspHI | TCATGA | 1 cut(s) | 841 |
| BspLI | GGNNCC | 7 cut(s) | 1727, 2154, 2180, 2873, 2995, 2996, 3088 |
| BspMAI | CTGCAG | 2 cut(s) | 1692, 2326 |
| BspMI | ACCTGC | 2 cut(s) | 2329, 2346 |
| BspPI | GGATC | 2 cut(s) | 143, 986 |
| BspQI | GCTCTTC | 1 cut(s) | 1542 |
| BspT104I | TTCGAA | 1 cut(s) | 1268 |
| BspT107I | GGYRCC | 1 cut(s) | 2152 |
| BsrDI | GCAATG | 2 cut(s) | 2334, 2421 |
| BsrGI | TGTACA | 2 cut(s) | 1234, 1499 |
| BsrI | ACTGG | 4 cut(s) | 93, 704, 1515, 1993 |
| BssECI | CCNNGG | 3 cut(s) | 2062, 2427, 3090 |
| BssMI | GATC | 5 cut(s) | 135, 893, 991, 1675, 2212 |
| BssNAI | GTATAC | 1 cut(s) | 2411 |
| BssNI | GRCGYC | 1 cut(s) | 2153 |
| BssSI | CACGAG | 1 cut(s) | 196 |
| BssT1I | CCWWGG | 1 cut(s) | 2062 |
| Bst1107I | GTATAC | 1 cut(s) | 2411 |
| Bst2BI | CACGAG | 1 cut(s) | 196 |
| Bst2UI | CCWGG | 2 cut(s) | 996, 2598 |
| Bst4CI | ACNGT | 5 cut(s) | 880, 907, 2452, 2653, 2762 |
| Bst6I | CTCTTC | 4 cut(s) | 1542, 2598, 2912, 2964 |
| BstACI | GRCGYC | 1 cut(s) | 2153 |
| BstAUI | TGTACA | 2 cut(s) | 1234, 1499 |
| BstBAI | YACGTR | 1 cut(s) | 1114 |
| BstBI | TTCGAA | 1 cut(s) | 1268 |
| BstC8I | GCNNGC | 5 cut(s) | 591, 748, 1966, 2676, 2720 |
| BstDEI | CTNAG | 9 cut(s) | 562, 1461, 1619, 2016, 2363, 2478, 2845, 2986, 3123 |
| BstDSI | CCRYGG | 1 cut(s) | 3090 |
| BstH2I | RGCGCY | 1 cut(s) | 2156 |
| BstHHI | GCGC | 2 cut(s) | 2155, 2708 |
| BstKTI | GATC | 5 cut(s) | 138, 896, 994, 1678, 2215 |
| BstMAI | GTCTC | 9 cut(s) | 717, 913, 1138, 1634, 2441, 2595, 2900, 3126, 3155 |
| BstMBI | GATC | 5 cut(s) | 135, 893, 991, 1675, 2212 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 138, 1064, 1159, 1834, 2705 |
| BstNI | CCWGG | 2 cut(s) | 996, 2598 |
| BstNSI | RCATGY | 3 cut(s) | 801, 1360, 1968 |
| BstSCI | CCNGG | 4 cut(s) | 994, 2426, 2427, 2596 |
| BstSFI | CTRYAG | 2 cut(s) | 1688, 2322 |
| BstSLI | GKGCMC | 2 cut(s) | 2997, 3029 |
| BstV1I | GCAGC | 6 cut(s) | 1556, 1674, 2336, 2990, 2993, 3125 |
| BstV2I | GAAGAC | 4 cut(s) | 605, 1931, 2061, 2634 |
| BstX2I | RGATCY | 2 cut(s) | 893, 991 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2633, 2670 |
| BstYI | RGATCY | 2 cut(s) | 893, 991 |
| BstZ17I | GTATAC | 1 cut(s) | 2411 |
| Bsu15I | ATCGAT | 1 cut(s) | 393 |
| BsuI | GTATCC | 1 cut(s) | 3171 |
| BsuRI | GGCC | 4 cut(s) | 315, 2061, 2170, 2995 |
| BsuTUI | ATCGAT | 1 cut(s) | 393 |
| BtgI | CCRYGG | 1 cut(s) | 3090 |
| BtgZI | GCGATG | 1 cut(s) | 136 |
| BtrI | CACGTC | 2 cut(s) | 711, 734 |
| BtsIMutI | CAGTG | 1 cut(s) | 1458 |
| BveI | ACCTGC | 2 cut(s) | 2329, 2346 |
| Cac8I | GCNNGC | 5 cut(s) | 591, 748, 1966, 2676, 2720 |
| CciI | TCATGA | 1 cut(s) | 841 |
| CfoI | GCGC | 2 cut(s) | 2155, 2708 |
| Cfr13I | GGNCC | 5 cut(s) | 385, 1558, 2872, 2993, 2994 |
| Cfr9I | CCCGGG | 1 cut(s) | 2427 |
| ClaI | ATCGAT | 1 cut(s) | 393 |
| CseI | GACGC | 1 cut(s) | 306 |
| Csp6I | GTAC | 4 cut(s) | 1109, 1235, 1500, 2473 |
| CviQI | GTAC | 4 cut(s) | 1109, 1235, 1500, 2473 |
| DdeI | CTNAG | 9 cut(s) | 562, 1461, 1619, 2016, 2363, 2478, 2845, 2986, 3123 |
| DinI | GGCGCC | 1 cut(s) | 2154 |
| DpnI | GATC | 5 cut(s) | 137, 895, 993, 1677, 2214 |
| DpnII | GATC | 5 cut(s) | 135, 893, 991, 1675, 2212 |
| DraIII | CACNNNGTG | 1 cut(s) | 2826 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2783 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2783 |
| EaeI | YGGCCR | 1 cut(s) | 2168 |
| Eam1104I | CTCTTC | 4 cut(s) | 1542, 2598, 2912, 2964 |
| EarI | CTCTTC | 4 cut(s) | 1542, 2598, 2912, 2964 |
| EciI | GGCGGA | 2 cut(s) | 962, 2789 |
| Eco130I | CCWWGG | 1 cut(s) | 2062 |
| Eco147I | AGGCCT | 1 cut(s) | 315 |
| Eco24I | GRGCYC | 1 cut(s) | 2997 |
| Eco32I | GATATC | 1 cut(s) | 2419 |
| Eco47I | GGWCC | 3 cut(s) | 385, 1558, 2872 |
| Eco57I | CTGAAG | 3 cut(s) | 1083, 1505, 1601 |
| Eco88I | CYCGRG | 2 cut(s) | 156, 2427 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2872, 2993, 2994 |
| EcoRI | GAATTC | 3 cut(s) | 276, 351, 1740 |
| EcoRII | CCWGG | 2 cut(s) | 994, 2596 |
| EcoRV | GATATC | 1 cut(s) | 2419 |
| EcoT14I | CCWWGG | 1 cut(s) | 2062 |
| EcoT22I | ATGCAT | 1 cut(s) | 939 |
| EcoT38I | GRGCYC | 1 cut(s) | 2997 |
| EgeI | GGCGCC | 1 cut(s) | 2154 |
| EheI | GGCGCC | 1 cut(s) | 2154 |
| ErhI | CCWWGG | 1 cut(s) | 2062 |
| Esp3I | CGTCTC | 1 cut(s) | 717 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 504, 536, 2046, 2078 |
| FaqI | GGGAC | 2 cut(s) | 1031, 2885 |
| FauI | CCCGC | 2 cut(s) | 125, 2822 |
| FblI | GTMKAC | 2 cut(s) | 1353, 2410 |
| Fnu4HI | GCNGC | 6 cut(s) | 1570, 1688, 2325, 3004, 3007, 3139 |
| FriOI | GRGCYC | 1 cut(s) | 2997 |
| Fsp4HI | GCNGC | 6 cut(s) | 1570, 1688, 2325, 3004, 3007, 3139 |
| FspBI | CTAG | 6 cut(s) | 453, 788, 929, 1085, 1901, 3156 |
| GlaI | GCGC | 2 cut(s) | 2154, 2707 |
| GluI | GCNGC | 6 cut(s) | 1570, 1688, 2325, 3004, 3007, 3139 |
| GsuI | CTGGAG | 5 cut(s) | 1142, 1532, 1744, 2090, 3105 |
| HaeII | RGCGCY | 1 cut(s) | 2156 |
| HaeIII | GGCC | 4 cut(s) | 315, 2061, 2170, 2995 |
| HapII | CCGG | 4 cut(s) | 665, 1943, 2295, 2428 |
| HgaI | GACGC | 1 cut(s) | 306 |
| HhaI | GCGC | 2 cut(s) | 2155, 2708 |
| Hin1I | GRCGYC | 1 cut(s) | 2153 |
| Hin6I | GCGC | 2 cut(s) | 2153, 2706 |
| HinP1I | GCGC | 2 cut(s) | 2153, 2706 |
| HincII | GTYRAC | 3 cut(s) | 147, 504, 1354 |
| HindII | GTYRAC | 3 cut(s) | 147, 504, 1354 |
| HindIII | AAGCTT | 1 cut(s) | 1487 |
| HpaII | CCGG | 4 cut(s) | 665, 1943, 2295, 2428 |
| HphI | GGTGA | 5 cut(s) | 932, 1511, 2200, 2530, 2738 |
| Hpy99I | CGWCG | 2 cut(s) | 300, 1355 |
| HpyAV | CCTTC | 7 cut(s) | 211, 1067, 1739, 1979, 2041, 2500, 3124 |
| HpyCH4III | ACNGT | 5 cut(s) | 880, 907, 2452, 2653, 2762 |
| HpyCH4IV | ACGT | 5 cut(s) | 710, 733, 1113, 1350, 2554 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 138, 1064, 1159, 1834, 2705 |
| HpyF3I | CTNAG | 9 cut(s) | 562, 1461, 1619, 2016, 2363, 2478, 2845, 2986, 3123 |
| HpySE526I | ACGT | 5 cut(s) | 710, 733, 1113, 1350, 2554 |
| Hsp92I | GRCGYC | 1 cut(s) | 2153 |
| HspAI | GCGC | 2 cut(s) | 2153, 2706 |
| KasI | GGCGCC | 1 cut(s) | 2152 |
| Kpn2I | TCCGGA | 2 cut(s) | 1942, 2294 |
| Kzo9I | GATC | 5 cut(s) | 135, 893, 991, 1675, 2212 |
| LguI | GCTCTTC | 1 cut(s) | 1542 |
| LmnI | GCTCC | 6 cut(s) | 184, 432, 638, 1725, 1834, 3086 |
| Lsp1109I | GCAGC | 6 cut(s) | 1556, 1674, 2336, 2990, 2993, 3125 |
| LweI | GCATC | 2 cut(s) | 924, 1289 |
| MaeI | CTAG | 6 cut(s) | 453, 788, 929, 1085, 1901, 3156 |
| MaeII | ACGT | 5 cut(s) | 710, 733, 1113, 1350, 2554 |
| MaeIII | GTNAC | 9 cut(s) | 569, 706, 829, 901, 2195, 2225, 2647, 2658, 2818 |
| MalI | GATC | 5 cut(s) | 137, 895, 993, 1677, 2214 |
| MboI | GATC | 5 cut(s) | 135, 893, 991, 1675, 2212 |
| MfeI | CAATTG | 2 cut(s) | 1857, 2668 |
| MflI | RGATCY | 2 cut(s) | 893, 991 |
| MhlI | GDGCHC | 4 cut(s) | 1997, 2987, 2997, 3029 |
| MlsI | TGGCCA | 1 cut(s) | 2170 |
| MluNI | TGGCCA | 1 cut(s) | 2170 |
| Mly113I | GGCGCC | 1 cut(s) | 2153 |
| MlyI | GAGTC | 2 cut(s) | 2386, 3110 |
| MmeI | TCCRAC | 5 cut(s) | 25, 94, 663, 1386, 1536 |
| Mox20I | TGGCCA | 1 cut(s) | 2170 |
| Mph1103I | ATGCAT | 1 cut(s) | 939 |
| MroI | TCCGGA | 2 cut(s) | 1942, 2294 |
| MroXI | GAANNNNTTC | 5 cut(s) | 8, 52, 264, 1029, 1866 |
| MscI | TGGCCA | 1 cut(s) | 2170 |
| MslI | CAYNNNNRTG | 4 cut(s) | 768, 1116, 2125, 2631 |
| Msp20I | TGGCCA | 1 cut(s) | 2170 |
| MspI | CCGG | 4 cut(s) | 665, 1943, 2295, 2428 |
| MspR9I | CCNGG | 4 cut(s) | 996, 2428, 2429, 2598 |
| MunI | CAATTG | 2 cut(s) | 1857, 2668 |
| Mva1269I | GAATGC | 2 cut(s) | 1005, 2585 |
| MvaI | CCWGG | 2 cut(s) | 996, 2598 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 138, 1064, 1159, 1834, 2705 |
| NarI | GGCGCC | 1 cut(s) | 2153 |
| NciI | CCSGG | 2 cut(s) | 2428, 2429 |
| NdeII | GATC | 5 cut(s) | 135, 893, 991, 1675, 2212 |
| NlaIV | GGNNCC | 7 cut(s) | 1727, 2154, 2180, 2873, 2995, 2996, 3088 |
| NmuCI | GTSAC | 3 cut(s) | 706, 2225, 2818 |
| NsiI | ATGCAT | 1 cut(s) | 939 |
| NspI | RCATGY | 3 cut(s) | 801, 1360, 1968 |
| NspV | TTCGAA | 1 cut(s) | 1268 |
| PaeI | GCATGC | 1 cut(s) | 1968 |
| PaeR7I | CTCGAG | 1 cut(s) | 156 |
| PagI | TCATGA | 1 cut(s) | 841 |
| PceI | AGGCCT | 1 cut(s) | 315 |
| PciI | ACATGT | 1 cut(s) | 1356 |
| PciSI | GCTCTTC | 1 cut(s) | 1542 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1790 |
| PctI | GAATGC | 2 cut(s) | 1005, 2585 |
| PdmI | GAANNNNTTC | 5 cut(s) | 8, 52, 264, 1029, 1866 |
| PfeI | GAWTC | 8 cut(s) | 53, 101, 117, 838, 980, 2117, 2750, 2854 |
| Pfl23II | CGTACG | 1 cut(s) | 2472 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2867 |
| PfoI | TCCNGGA | 2 cut(s) | 994, 2596 |
| PkrI | GCNGC | 6 cut(s) | 1571, 1689, 2326, 3005, 3008, 3140 |
| PleI | GAGTC | 2 cut(s) | 2385, 3109 |
| PluTI | GGCGCC | 1 cut(s) | 2156 |
| PpsI | GAGTC | 2 cut(s) | 2385, 3109 |
| Ppu21I | YACGTR | 1 cut(s) | 1114 |
| PpuMI | RGGWCCY | 1 cut(s) | 2872 |
| PscI | ACATGT | 1 cut(s) | 1356 |
| PshBI | ATTAAT | 2 cut(s) | 1671, 2348 |
| PsiI | TTATAA | 1 cut(s) | 446 |
| Psp5II | RGGWCCY | 1 cut(s) | 2872 |
| Psp6I | CCWGG | 2 cut(s) | 994, 2596 |
| PspGI | CCWGG | 2 cut(s) | 994, 2596 |
| PspLI | CGTACG | 1 cut(s) | 2472 |
| PspN4I | GGNNCC | 7 cut(s) | 1727, 2154, 2180, 2873, 2995, 2996, 3088 |
| PspOMI | GGGCCC | 1 cut(s) | 2993 |
| PspPI | GGNCC | 5 cut(s) | 385, 1558, 2872, 2993, 2994 |
| PspPPI | RGGWCCY | 1 cut(s) | 2872 |
| PspXI | VCTCGAGB | 1 cut(s) | 156 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1218, 1250 |
| PstI | CTGCAG | 2 cut(s) | 1692, 2326 |
| PsuI | RGATCY | 2 cut(s) | 893, 991 |
| RsaI | GTAC | 4 cut(s) | 1110, 1236, 1501, 2474 |
| RsaNI | GTAC | 4 cut(s) | 1109, 1235, 1500, 2473 |
| RseI | CAYNNNNRTG | 4 cut(s) | 768, 1116, 2125, 2631 |
| SalI | GTCGAC | 1 cut(s) | 1352 |
| SapI | GCTCTTC | 1 cut(s) | 1542 |
| SatI | GCNGC | 6 cut(s) | 1570, 1688, 2325, 3004, 3007, 3139 |
| Sau3AI | GATC | 5 cut(s) | 135, 893, 991, 1675, 2212 |
| Sau96I | GGNCC | 5 cut(s) | 385, 1558, 2872, 2993, 2994 |
| SchI | GAGTC | 2 cut(s) | 2386, 3110 |
| ScrFI | CCNGG | 4 cut(s) | 996, 2428, 2429, 2598 |
| SduI | GDGCHC | 4 cut(s) | 1997, 2987, 2997, 3029 |
| SfaNI | GCATC | 2 cut(s) | 924, 1289 |
| SfcI | CTRYAG | 2 cut(s) | 1688, 2322 |
| SfoI | GGCGCC | 1 cut(s) | 2154 |
| Sfr274I | CTCGAG | 1 cut(s) | 156 |
| SfuI | TTCGAA | 1 cut(s) | 1268 |
| SinI | GGWCC | 3 cut(s) | 385, 1558, 2872 |
| SlaI | CTCGAG | 1 cut(s) | 156 |
| SmaI | CCCGGG | 1 cut(s) | 2429 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 768, 1116, 2125, 2631 |
| SmlI | CTYRAG | 1 cut(s) | 156 |
| SmoI | CTYRAG | 1 cut(s) | 156 |
| SphI | GCATGC | 1 cut(s) | 1968 |
| SseBI | AGGCCT | 1 cut(s) | 315 |
| SsiI | CCGC | 5 cut(s) | 132, 973, 2774, 2829, 3115 |
| SspDI | GGCGCC | 1 cut(s) | 2152 |
| SspI | AATATT | 1 cut(s) | 3033 |
| SspMI | CTAG | 6 cut(s) | 453, 788, 929, 1085, 1901, 3156 |
| StuI | AGGCCT | 1 cut(s) | 315 |
| StyD4I | CCNGG | 4 cut(s) | 994, 2426, 2427, 2596 |
| StyI | CCWWGG | 1 cut(s) | 2062 |
| TaaI | ACNGT | 5 cut(s) | 880, 907, 2452, 2653, 2762 |
| TaiI | ACGT | 5 cut(s) | 713, 736, 1116, 1353, 2557 |
| TaqI | TCGA | 8 cut(s) | 157, 295, 393, 482, 1268, 1353, 1784, 2405 |
| TatI | WGTACW | 2 cut(s) | 1234, 1499 |
| TfiI | GAWTC | 8 cut(s) | 53, 101, 117, 838, 980, 2117, 2750, 2854 |
| TscAI | CASTG | 1 cut(s) | 1465 |
| TseFI | GTSAC | 3 cut(s) | 706, 2225, 2818 |
| TseI | GCWGC | 6 cut(s) | 1569, 1687, 2324, 3003, 3006, 3138 |
| Tsp45I | GTSAC | 3 cut(s) | 706, 2225, 2818 |
| TspGWI | ACGGA | 3 cut(s) | 1199, 2460, 2635 |
| TspMI | CCCGGG | 1 cut(s) | 2427 |
| TspRI | CASTG | 1 cut(s) | 1465 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2867 |
| VneI | GTGCAC | 1 cut(s) | 3025 |
| VpaK11BI | GGWCC | 3 cut(s) | 385, 1558, 2872 |
| VspI | ATTAAT | 2 cut(s) | 1671, 2348 |
| XapI | RAATTY | 5 cut(s) | 276, 351, 1586, 1740, 2029 |
| XbaI | TCTAGA | 1 cut(s) | 787 |
| XceI | RCATGY | 3 cut(s) | 801, 1360, 1968 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1402 |
| XhoI | CTCGAG | 1 cut(s) | 156 |
| XmaI | CCCGGG | 1 cut(s) | 2427 |
| XmiI | GTMKAC | 2 cut(s) | 1353, 2410 |
| XmnI | GAANNNNTTC | 5 cut(s) | 8, 52, 264, 1029, 1866 |
| XspI | CTAG | 6 cut(s) | 453, 788, 929, 1085, 1901, 3156 |
| Zsp2I | ATGCAT | 1 cut(s) | 939 |