TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 149 - 190 | 2.3e-15 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 273 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 361 |
| AclWI | GGATC | 1 cut(s) | 639 |
| AcoI | YGGCCR | 1 cut(s) | 23 |
| AfaI | GTAC | 4 cut(s) | 49, 60, 447, 619 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 361, 412, 413, 627 |
| AgsI | TTSAA | 5 cut(s) | 38, 74, 206, 303, 625 |
| AjnI | CCWGG | 2 cut(s) | 360, 448 |
| AluBI | AGCT | 4 cut(s) | 162, 244, 287, 511 |
| AluI | AGCT | 4 cut(s) | 162, 244, 287, 511 |
| Alw26I | GTCTC | 1 cut(s) | 217 |
| AlwI | GGATC | 1 cut(s) | 639 |
| AoxI | GGCC | 1 cut(s) | 23 |
| AspLEI | GCGC | 2 cut(s) | 274, 560 |
| AsuHPI | GGTGA | 1 cut(s) | 466 |
| BalI | TGGCCA | 1 cut(s) | 25 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 478, 510 |
| BbsI | GAAGAC | 1 cut(s) | 486 |
| BccI | CCATC | 3 cut(s) | 34, 363, 486 |
| BceAI | ACGGC | 1 cut(s) | 545 |
| BciT130I | CCWGG | 2 cut(s) | 362, 450 |
| BcoDI | GTCTC | 1 cut(s) | 217 |
| BfaI | CTAG | 1 cut(s) | 664 |
| BglII | AGATCT | 1 cut(s) | 373 |
| Bme1390I | CCNGG | 2 cut(s) | 362, 450 |
| BmiI | GGNNCC | 1 cut(s) | 9 |
| BmrFI | CCNGG | 2 cut(s) | 362, 450 |
| BmsI | GCATC | 1 cut(s) | 91 |
| BpiI | GAAGAC | 1 cut(s) | 486 |
| BpmI | CTGGAG | 1 cut(s) | 664 |
| BsaBI | GATNNNNATC | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 1 cut(s) | 577 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 361, 412, 413, 627 |
| Bse8I | GATNNNNATC | 1 cut(s) | 81 |
| BseBI | CCWGG | 2 cut(s) | 362, 450 |
| BseDI | CCNNGG | 1 cut(s) | 577 |
| BseGI | GGATG | 1 cut(s) | 106 |
| BseJI | GATNNNNATC | 1 cut(s) | 81 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 361, 412, 413, 627 |
| BseMII | CTCAG | 1 cut(s) | 218 |
| Bsh1285I | CGRYCG | 1 cut(s) | 331 |
| BshFI | GGCC | 1 cut(s) | 25 |
| BsiEI | CGRYCG | 1 cut(s) | 331 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 361, 412, 413, 627 |
| BsmAI | GTCTC | 1 cut(s) | 217 |
| BsnI | GGCC | 1 cut(s) | 25 |
| Bsp143I | GATC | 3 cut(s) | 230, 373, 631 |
| BspANI | GGCC | 1 cut(s) | 25 |
| BspCNI | CTCAG | 1 cut(s) | 219 |
| BspHI | TCATGA | 1 cut(s) | 174 |
| BspLI | GGNNCC | 1 cut(s) | 9 |
| BspPI | GGATC | 1 cut(s) | 639 |
| BssECI | CCNNGG | 1 cut(s) | 577 |
| BssMI | GATC | 3 cut(s) | 230, 373, 631 |
| BssT1I | CCWWGG | 1 cut(s) | 577 |
| Bst2UI | CCWGG | 2 cut(s) | 362, 450 |
| Bst4CI | ACNGT | 2 cut(s) | 298, 471 |
| BstDEI | CTNAG | 2 cut(s) | 193, 227 |
| BstF5I | GGATG | 1 cut(s) | 106 |
| BstHHI | GCGC | 2 cut(s) | 274, 560 |
| BstKTI | GATC | 3 cut(s) | 233, 376, 634 |
| BstMAI | GTCTC | 1 cut(s) | 217 |
| BstMBI | GATC | 3 cut(s) | 230, 373, 631 |
| BstMCI | CGRYCG | 1 cut(s) | 331 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 557 |
| BstNI | CCWGG | 2 cut(s) | 362, 450 |
| BstSCI | CCNGG | 2 cut(s) | 360, 448 |
| BstV2I | GAAGAC | 1 cut(s) | 486 |
| BstX2I | RGATCY | 1 cut(s) | 373 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 522 |
| BstYI | RGATCY | 1 cut(s) | 373 |
| BsuRI | GGCC | 1 cut(s) | 25 |
| BtsCI | GGATG | 1 cut(s) | 106 |
| BtsIMutI | CAGTG | 1 cut(s) | 488 |
| CciI | TCATGA | 1 cut(s) | 174 |
| CfoI | GCGC | 2 cut(s) | 274, 560 |
| Csp6I | GTAC | 4 cut(s) | 48, 59, 446, 618 |
| CviAII | CATG | 3 cut(s) | 21, 175, 275 |
| CviJI | RGCY | 9 cut(s) | 8, 25, 162, 244, 287, 511, 546, 574, 642 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 25, 162, 244, 287, 511, 546, 574, 642 |
| CviQI | GTAC | 4 cut(s) | 48, 59, 446, 618 |
| DdeI | CTNAG | 2 cut(s) | 193, 227 |
| DpnI | GATC | 3 cut(s) | 232, 375, 633 |
| DpnII | GATC | 3 cut(s) | 230, 373, 631 |
| EaeI | YGGCCR | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 577 |
| EcoRII | CCWGG | 2 cut(s) | 360, 448 |
| EcoT14I | CCWWGG | 1 cut(s) | 577 |
| ErhI | CCWWGG | 1 cut(s) | 577 |
| FaeI | CATG | 3 cut(s) | 24, 178, 278 |
| FaiI | YATR | 9 cut(s) | 22, 176, 257, 266, 276, 284, 341, 554, 556 |
| FatI | CATG | 3 cut(s) | 20, 174, 274 |
| FokI | GGATG | 1 cut(s) | 113 |
| FspAI | RTGCGCAY | 1 cut(s) | 273 |
| FspBI | CTAG | 1 cut(s) | 664 |
| FspI | TGCGCA | 1 cut(s) | 273 |
| GlaI | GCGC | 2 cut(s) | 273, 559 |
| GsuI | CTGGAG | 1 cut(s) | 664 |
| HaeIII | GGCC | 1 cut(s) | 25 |
| HhaI | GCGC | 2 cut(s) | 274, 560 |
| Hin1II | CATG | 3 cut(s) | 24, 178, 278 |
| Hin6I | GCGC | 2 cut(s) | 272, 558 |
| HinP1I | GCGC | 2 cut(s) | 272, 558 |
| HindIII | AAGCTT | 1 cut(s) | 160 |
| HinfI | GANTC | 2 cut(s) | 178, 646 |
| HphI | GGTGA | 1 cut(s) | 466 |
| Hpy166II | GTNNAC | 1 cut(s) | 474 |
| Hpy188I | TCNGA | 2 cut(s) | 100, 383 |
| Hpy188III | TCNNGA | 4 cut(s) | 38, 65, 175, 426 |
| Hpy8I | GTNNAC | 1 cut(s) | 474 |
| HpyAV | CCTTC | 2 cut(s) | 206, 631 |
| HpyCH4III | ACNGT | 2 cut(s) | 298, 471 |
| HpyCH4V | TGCA | 3 cut(s) | 81, 219, 282 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 557 |
| HpyF3I | CTNAG | 2 cut(s) | 193, 227 |
| Hsp92II | CATG | 3 cut(s) | 24, 178, 278 |
| HspAI | GCGC | 2 cut(s) | 272, 558 |
| Kzo9I | GATC | 3 cut(s) | 230, 373, 631 |
| LmnI | GCTCC | 1 cut(s) | 13 |
| LpnPI | CCDG | 9 cut(s) | 252, 347, 374, 398, 435, 462, 477, 611, 628 |
| LweI | GCATC | 1 cut(s) | 91 |
| MaeI | CTAG | 1 cut(s) | 664 |
| MaeIII | GTNAC | 5 cut(s) | 260, 499, 562, 593, 659 |
| MalI | GATC | 3 cut(s) | 232, 375, 633 |
| MboI | GATC | 3 cut(s) | 230, 373, 631 |
| MboII | GAAGA | 3 cut(s) | 86, 111, 486 |
| MflI | RGATCY | 1 cut(s) | 373 |
| MlsI | TGGCCA | 1 cut(s) | 25 |
| MluCI | AATT | 7 cut(s) | 33, 92, 151, 206, 349, 418, 520 |
| MluNI | TGGCCA | 1 cut(s) | 25 |
| MlyI | GAGTC | 1 cut(s) | 655 |
| MmeI | TCCRAC | 1 cut(s) | 69 |
| MnlI | CCTC | 1 cut(s) | 417 |
| Mox20I | TGGCCA | 1 cut(s) | 25 |
| MscI | TGGCCA | 1 cut(s) | 25 |
| MseI | TTAA | 2 cut(s) | 125, 134 |
| Msp20I | TGGCCA | 1 cut(s) | 25 |
| MspR9I | CCNGG | 2 cut(s) | 362, 450 |
| MvaI | CCWGG | 2 cut(s) | 362, 450 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 557 |
| NdeII | GATC | 3 cut(s) | 230, 373, 631 |
| NlaIII | CATG | 3 cut(s) | 24, 178, 278 |
| NlaIV | GGNNCC | 1 cut(s) | 9 |
| NsbI | TGCGCA | 1 cut(s) | 273 |
| PagI | TCATGA | 1 cut(s) | 174 |
| PfeI | GAWTC | 1 cut(s) | 178 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 361 |
| PfoI | TCCNGGA | 1 cut(s) | 360 |
| PleI | GAGTC | 1 cut(s) | 654 |
| PpsI | GAGTC | 1 cut(s) | 654 |
| Psp6I | CCWGG | 2 cut(s) | 360, 448 |
| PspGI | CCWGG | 2 cut(s) | 360, 448 |
| PspN4I | GGNNCC | 1 cut(s) | 9 |
| PsuI | RGATCY | 1 cut(s) | 373 |
| RsaI | GTAC | 4 cut(s) | 49, 60, 447, 619 |
| RsaNI | GTAC | 4 cut(s) | 48, 59, 446, 618 |
| SaqAI | TTAA | 2 cut(s) | 125, 134 |
| Sau3AI | GATC | 3 cut(s) | 230, 373, 631 |
| SchI | GAGTC | 1 cut(s) | 655 |
| ScrFI | CCNGG | 2 cut(s) | 362, 450 |
| SfaNI | GCATC | 1 cut(s) | 91 |
| Sse9I | AATT | 7 cut(s) | 33, 92, 151, 206, 349, 418, 520 |
| SspMI | CTAG | 1 cut(s) | 664 |
| StyD4I | CCNGG | 2 cut(s) | 360, 448 |
| StyI | CCWWGG | 1 cut(s) | 577 |
| TaaI | ACNGT | 2 cut(s) | 298, 471 |
| TaqI | TCGA | 1 cut(s) | 181 |
| TaqII | GACCGA | 1 cut(s) | 317 |
| TasI | AATT | 7 cut(s) | 33, 92, 151, 206, 349, 418, 520 |
| TatI | WGTACW | 1 cut(s) | 47 |
| TfiI | GAWTC | 1 cut(s) | 178 |
| Tru1I | TTAA | 2 cut(s) | 125, 134 |
| Tru9I | TTAA | 2 cut(s) | 125, 134 |
| TscAI | CASTG | 1 cut(s) | 488 |
| TspDTI | ATGAA | 5 cut(s) | 6, 111, 191, 237, 328 |
| TspGWI | ACGGA | 1 cut(s) | 487 |
| TspRI | CASTG | 1 cut(s) | 488 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 361 |
| XspI | CTAG | 1 cut(s) | 664 |