RESISTANCE protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 188 | 6.8e-50 | TIR domain |
| TIR_2 | PF13676 | 15 - 115 | 4.2e-13 | TIR domain |
| NB-ARC | PF00931 | 192 - 354 | 5.9e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 423 - 492 | 6.4e-23 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_EndoS | PF23952 | 636 - 718 | 2.7e-07 | Endo-beta-N-acetylglucosaminidase EndoS LRR domain |
| LRR_13 | PF23286 | 725 - 800 | 2.1e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 730 - 829 | 8.5e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 801 - 870 | 2.1e-13 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 803 - 902 | 8.2e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 871 - 940 | 2.8e-13 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 875 - 970 | 2.8e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 941 - 1010 | 2.8e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 943 - 1041 | 1e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 1011 - 1094 | 1.1e-14 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 1015 - 1113 | 5.1e-08 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 956 |
| AccB1I | GGYRCC | 1 cut(s) | 301 |
| AccI | GTMKAC | 1 cut(s) | 66 |
| AccII | CGCG | 4 cut(s) | 384, 428, 466, 678 |
| AciI | CCGC | 4 cut(s) | 426, 428, 1217, 1808 |
| AclWI | GGATC | 8 cut(s) | 117, 317, 2182, 2410, 2620, 2830, 3040, 3250 |
| AcoI | YGGCCR | 2 cut(s) | 88, 1874 |
| AcsI | RAATTY | 5 cut(s) | 52, 351, 592, 1227, 1973 |
| AcuI | CTGAAG | 5 cut(s) | 351, 1042, 1641, 1749, 2393 |
| AcyI | GRCGYC | 1 cut(s) | 135 |
| AfaI | GTAC | 2 cut(s) | 765, 2065 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1222, 1223, 1370 |
| AflII | CTTAAG | 4 cut(s) | 1015, 2003, 2039, 2144 |
| AjiI | CACGTC | 1 cut(s) | 240 |
| AjnI | CCWGG | 7 cut(s) | 267, 607, 1492, 1581, 2649, 2859, 3069 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 897, 929, 1874, 1906 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1365, 1397, 1802, 1834 |
| Alw21I | GWGCWC | 3 cut(s) | 106, 1399, 1777 |
| Alw26I | GTCTC | 6 cut(s) | 541, 1847, 2124, 2705, 2915, 3125 |
| AlwI | GGATC | 8 cut(s) | 117, 317, 2182, 2410, 2620, 2830, 3040, 3250 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1952 |
| Ama87I | CYCGRG | 2 cut(s) | 1007, 1178 |
| AoxI | GGCC | 6 cut(s) | 88, 1874, 2335, 2545, 2755, 3175 |
| ApoI | RAATTY | 5 cut(s) | 52, 351, 592, 1227, 1973 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1072, 1104 |
| AseI | ATTAAT | 6 cut(s) | 119, 2322, 2532, 2742, 2952, 3162 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 780, 1467, 1527 |
| AspLEI | GCGC | 1 cut(s) | 680 |
| AspS9I | GGNCC | 7 cut(s) | 423, 2335, 2350, 2560, 2770, 2980, 3190 |
| AsuC2I | CCSGG | 1 cut(s) | 2157 |
| AsuHPI | GGTGA | 2 cut(s) | 115, 1441 |
| AvaI | CYCGRG | 2 cut(s) | 1007, 1178 |
| AvaII | GGWCC | 6 cut(s) | 423, 2350, 2560, 2770, 2980, 3190 |
| BaeGI | GKGCMC | 1 cut(s) | 1179 |
| BalI | TGGCCA | 1 cut(s) | 1876 |
| BanI | GGYRCC | 1 cut(s) | 301 |
| BanII | GRGCYC | 3 cut(s) | 106, 1399, 1777 |
| BauI | CACGAG | 1 cut(s) | 2962 |
| BbsI | GAAGAC | 1 cut(s) | 37 |
| Bbv12I | GWGCWC | 3 cut(s) | 106, 1399, 1777 |
| BbvI | GCAGC | 9 cut(s) | 181, 427, 704, 934, 2400, 2610, 2820, 3030, 3240 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 64, 98, 464, 498 |
| BciT130I | CCWGG | 7 cut(s) | 269, 609, 1494, 1583, 2651, 2861, 3071 |
| BciVI | GTATCC | 1 cut(s) | 1705 |
| BcnI | CCSGG | 1 cut(s) | 2157 |
| BcoDI | GTCTC | 6 cut(s) | 541, 1847, 2124, 2705, 2915, 3125 |
| BfaI | CTAG | 6 cut(s) | 789, 963, 1262, 1289, 1445, 2126 |
| BfmI | CTRYAG | 2 cut(s) | 97, 1557 |
| BfrI | CTTAAG | 4 cut(s) | 1015, 2003, 2039, 2144 |
| BfuI | GTATCC | 1 cut(s) | 1705 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2157 |
| BglII | AGATCT | 1 cut(s) | 78 |
| BlpI | GCTNAGC | 1 cut(s) | 1953 |
| Bme1390I | CCNGG | 8 cut(s) | 269, 609, 1494, 1583, 2157, 2651, 2861, 3071 |
| Bme18I | GGWCC | 6 cut(s) | 423, 2350, 2560, 2770, 2980, 3190 |
| BmeT110I | CYCGRG | 2 cut(s) | 1007, 1178 |
| BmgBI | CACGTC | 1 cut(s) | 240 |
| BmgT120I | GGNCC | 7 cut(s) | 423, 2335, 2350, 2560, 2770, 2980, 3190 |
| BmiI | GGNNCC | 1 cut(s) | 303 |
| BmrFI | CCNGG | 8 cut(s) | 269, 609, 1494, 1583, 2157, 2651, 2861, 3071 |
| BmsI | GCATC | 6 cut(s) | 472, 574, 1422, 1598, 1938, 2169 |
| BpiI | GAAGAC | 1 cut(s) | 37 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1595, 1627 |
| BpmI | CTGGAG | 4 cut(s) | 439, 2672, 2882, 3092 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1953 |
| BpuEI | CTTGAG | 8 cut(s) | 1081, 1850, 2234, 2462, 2567, 2777, 2987, 3197 |
| BpuMI | CCSGG | 1 cut(s) | 2157 |
| BsaAI | YACGTR | 1 cut(s) | 1664 |
| BsaBI | GATNNNNATC | 1 cut(s) | 203 |
| BsaHI | GRCGYC | 1 cut(s) | 135 |
| BsaJI | CCNNGG | 5 cut(s) | 426, 608, 1120, 1493, 1698 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1489, 1519, 2237, 2267 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1222, 1223, 1370 |
| Bse1I | ACTGG | 5 cut(s) | 261, 1048, 1431, 1805, 1888 |
| Bse8I | GATNNNNATC | 1 cut(s) | 203 |
| BseBI | CCWGG | 7 cut(s) | 269, 609, 1494, 1583, 2651, 2861, 3071 |
| BseDI | CCNNGG | 5 cut(s) | 426, 608, 1120, 1493, 1698 |
| BseGI | GGATG | 5 cut(s) | 484, 514, 622, 1877, 2087 |
| BseJI | GATNNNNATC | 1 cut(s) | 203 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1222, 1223, 1370 |
| BseMII | CTCAG | 4 cut(s) | 192, 1844, 1944, 2217 |
| BseNI | ACTGG | 5 cut(s) | 261, 1048, 1431, 1805, 1888 |
| BseRI | GAGGAG | 2 cut(s) | 164, 2261 |
| BseSI | GKGCMC | 1 cut(s) | 1179 |
| BseXI | GCAGC | 9 cut(s) | 181, 427, 704, 934, 2400, 2610, 2820, 3030, 3240 |
| BseYI | CCCAGC | 1 cut(s) | 456 |
| BsgI | GTGCAG | 2 cut(s) | 780, 833 |
| Bsh1236I | CGCG | 4 cut(s) | 384, 428, 466, 678 |
| Bsh1285I | CGRYCG | 2 cut(s) | 207, 1393 |
| BshFI | GGCC | 6 cut(s) | 90, 1876, 2337, 2547, 2757, 3177 |
| BshNI | GGYRCC | 1 cut(s) | 301 |
| BsiEI | CGRYCG | 2 cut(s) | 207, 1393 |
| BsiHKAI | GWGCWC | 3 cut(s) | 106, 1399, 1777 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1007, 1178 |
| BsiSI | CCGG | 2 cut(s) | 453, 2156 |
| BslFI | GGGAC | 1 cut(s) | 2305 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1222, 1223, 1370 |
| BsmAI | GTCTC | 6 cut(s) | 541, 1847, 2124, 2705, 2915, 3125 |
| BsmFI | GGGAC | 1 cut(s) | 2305 |
| BsmI | GAATGC | 7 cut(s) | 925, 1748, 2391, 2601, 2811, 3021, 3231 |
| BsnI | GGCC | 6 cut(s) | 90, 1876, 2337, 2547, 2757, 3177 |
| BsoBI | CYCGRG | 2 cut(s) | 1007, 1178 |
| Bsp1286I | GDGCHC | 4 cut(s) | 106, 1179, 1399, 1777 |
| Bsp1407I | TGTACA | 1 cut(s) | 2063 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1953 |
| Bsp68I | TCGCGA | 1 cut(s) | 466 |
| BspACI | CCGC | 4 cut(s) | 426, 428, 1217, 1808 |
| BspANI | GGCC | 6 cut(s) | 90, 1876, 2337, 2547, 2757, 3177 |
| BspCNI | CTCAG | 4 cut(s) | 191, 1843, 1945, 2218 |
| BspFNI | CGCG | 4 cut(s) | 384, 428, 466, 678 |
| BspHI | TCATGA | 1 cut(s) | 1656 |
| BspLI | GGNNCC | 1 cut(s) | 303 |
| BspPI | GGATC | 8 cut(s) | 117, 317, 2182, 2410, 2620, 2830, 3040, 3250 |
| BspQI | GCTCTTC | 1 cut(s) | 2369 |
| BspT107I | GGYRCC | 1 cut(s) | 301 |
| BspTI | CTTAAG | 4 cut(s) | 1015, 2003, 2039, 2144 |
| BsrGI | TGTACA | 1 cut(s) | 2063 |
| BsrI | ACTGG | 5 cut(s) | 261, 1048, 1431, 1805, 1888 |
| BssECI | CCNNGG | 5 cut(s) | 426, 608, 1120, 1493, 1698 |
| BssNI | GRCGYC | 1 cut(s) | 135 |
| BssSI | CACGAG | 1 cut(s) | 2962 |
| BssT1I | CCWWGG | 1 cut(s) | 1120 |
| Bst2BI | CACGAG | 1 cut(s) | 2962 |
| Bst2UI | CCWGG | 7 cut(s) | 269, 609, 1494, 1583, 2651, 2861, 3071 |
| BstACI | GRCGYC | 1 cut(s) | 135 |
| BstAFI | CTTAAG | 4 cut(s) | 1015, 2003, 2039, 2144 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 778 |
| BstAUI | TGTACA | 1 cut(s) | 2063 |
| BstBAI | YACGTR | 1 cut(s) | 1664 |
| BstDEI | CTNAG | 7 cut(s) | 178, 1646, 1830, 1953, 2226, 2354, 2984 |
| BstDSI | CCRYGG | 1 cut(s) | 426 |
| BstEII | GGTNACC | 1 cut(s) | 430 |
| BstF5I | GGATG | 5 cut(s) | 484, 514, 622, 1877, 2087 |
| BstFNI | CGCG | 4 cut(s) | 384, 428, 466, 678 |
| BstHHI | GCGC | 1 cut(s) | 680 |
| BstMAI | GTCTC | 6 cut(s) | 541, 1847, 2124, 2705, 2915, 3125 |
| BstMCI | CGRYCG | 2 cut(s) | 207, 1393 |
| BstNI | CCWGG | 7 cut(s) | 269, 609, 1494, 1583, 2651, 2861, 3071 |
| BstNSI | RCATGY | 3 cut(s) | 702, 1302, 3013 |
| BstPI | GGTNACC | 1 cut(s) | 430 |
| BstSCI | CCNGG | 8 cut(s) | 267, 607, 1492, 1581, 2155, 2649, 2859, 3069 |
| BstSFI | CTRYAG | 2 cut(s) | 97, 1557 |
| BstSLI | GKGCMC | 1 cut(s) | 1179 |
| BstUI | CGCG | 4 cut(s) | 384, 428, 466, 678 |
| BstV1I | GCAGC | 9 cut(s) | 181, 427, 704, 934, 2400, 2610, 2820, 3030, 3240 |
| BstV2I | GAAGAC | 1 cut(s) | 37 |
| BstX2I | RGATCY | 7 cut(s) | 78, 2174, 2402, 2612, 2822, 3032, 3242 |
| BstYI | RGATCY | 7 cut(s) | 78, 2174, 2402, 2612, 2822, 3032, 3242 |
| BsuI | GTATCC | 1 cut(s) | 1705 |
| BsuRI | GGCC | 6 cut(s) | 90, 1876, 2337, 2547, 2757, 3177 |
| BtgI | CCRYGG | 1 cut(s) | 426 |
| BtgZI | GCGATG | 1 cut(s) | 655 |
| BtrI | CACGTC | 1 cut(s) | 240 |
| BtsCI | GGATG | 5 cut(s) | 484, 514, 622, 1877, 2087 |
| BtsI | GCAGTG | 1 cut(s) | 594 |
| BtsIMutI | CAGTG | 7 cut(s) | 594, 627, 1333, 1798, 2550, 2760, 3180 |
| BtuMI | TCGCGA | 1 cut(s) | 466 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1952 |
| CciI | TCATGA | 1 cut(s) | 1656 |
| CfoI | GCGC | 1 cut(s) | 680 |
| Cfr13I | GGNCC | 7 cut(s) | 423, 2335, 2350, 2560, 2770, 2980, 3190 |
| Cfr42I | CCGCGG | 1 cut(s) | 429 |
| CseI | GACGC | 3 cut(s) | 143, 290, 2367 |
| Csp6I | GTAC | 2 cut(s) | 764, 2064 |
| CviQI | GTAC | 2 cut(s) | 764, 2064 |
| DdeI | CTNAG | 7 cut(s) | 178, 1646, 1830, 1953, 2226, 2354, 2984 |
| DraI | TTTAAA | 2 cut(s) | 1600, 2706 |
| EaeI | YGGCCR | 2 cut(s) | 88, 1874 |
| Ecl136II | GAGCTC | 3 cut(s) | 104, 1397, 1775 |
| Eco130I | CCWWGG | 1 cut(s) | 1120 |
| Eco147I | AGGCCT | 3 cut(s) | 2547, 2757, 3177 |
| Eco24I | GRGCYC | 3 cut(s) | 106, 1399, 1777 |
| Eco47I | GGWCC | 6 cut(s) | 423, 2350, 2560, 2770, 2980, 3190 |
| Eco53kI | GAGCTC | 3 cut(s) | 104, 1397, 1775 |
| Eco57I | CTGAAG | 5 cut(s) | 351, 1042, 1641, 1749, 2393 |
| Eco88I | CYCGRG | 2 cut(s) | 1007, 1178 |
| Eco91I | GGTNACC | 1 cut(s) | 430 |
| EcoICRI | GAGCTC | 3 cut(s) | 104, 1397, 1775 |
| EcoO65I | GGTNACC | 1 cut(s) | 430 |
| EcoRI | GAATTC | 2 cut(s) | 592, 1227 |
| EcoRII | CCWGG | 7 cut(s) | 267, 607, 1492, 1581, 2649, 2859, 3069 |
| EcoT14I | CCWWGG | 1 cut(s) | 1120 |
| EcoT22I | ATGCAT | 1 cut(s) | 1437 |
| EcoT38I | GRGCYC | 3 cut(s) | 106, 1399, 1777 |
| ErhI | CCWWGG | 1 cut(s) | 1120 |
| FaqI | GGGAC | 1 cut(s) | 2305 |
| FauI | CCCGC | 1 cut(s) | 1224 |
| FauNDI | CATATG | 6 cut(s) | 768, 2397, 2607, 2817, 3027, 3237 |
| FblI | GTMKAC | 1 cut(s) | 66 |
| FokI | GGATG | 5 cut(s) | 491, 521, 629, 1864, 2074 |
| FriOI | GRGCYC | 3 cut(s) | 106, 1399, 1777 |
| FspBI | CTAG | 6 cut(s) | 789, 963, 1262, 1289, 1445, 2126 |
| GlaI | GCGC | 1 cut(s) | 679 |
| GsaI | CCCAGC | 1 cut(s) | 460 |
| GsuI | CTGGAG | 4 cut(s) | 439, 2672, 2882, 3092 |
| HaeIII | GGCC | 6 cut(s) | 90, 1876, 2337, 2547, 2757, 3177 |
| HapII | CCGG | 2 cut(s) | 453, 2156 |
| HgaI | GACGC | 3 cut(s) | 143, 290, 2367 |
| HhaI | GCGC | 1 cut(s) | 680 |
| Hin1I | GRCGYC | 1 cut(s) | 135 |
| Hin6I | GCGC | 1 cut(s) | 678 |
| HinP1I | GCGC | 1 cut(s) | 678 |
| HincII | GTYRAC | 1 cut(s) | 2083 |
| HindII | GTYRAC | 1 cut(s) | 2083 |
| HindIII | AAGCTT | 4 cut(s) | 363, 488, 711, 3326 |
| HpaII | CCGG | 2 cut(s) | 453, 2156 |
| HphI | GGTGA | 2 cut(s) | 115, 1441 |
| Hpy166II | GTNNAC | 3 cut(s) | 67, 1906, 2083 |
| Hpy8I | GTNNAC | 3 cut(s) | 67, 1906, 2083 |
| Hpy99I | CGWCG | 4 cut(s) | 89, 137, 161, 241 |
| HpyCH4IV | ACGT | 6 cut(s) | 42, 239, 604, 827, 882, 1663 |
| HpyF3I | CTNAG | 7 cut(s) | 178, 1646, 1830, 1953, 2226, 2354, 2984 |
| HpySE526I | ACGT | 6 cut(s) | 42, 239, 604, 827, 882, 1663 |
| Hsp92I | GRCGYC | 1 cut(s) | 135 |
| HspAI | GCGC | 1 cut(s) | 678 |
| KspI | CCGCGG | 1 cut(s) | 429 |
| LguI | GCTCTTC | 1 cut(s) | 2369 |
| Lsp1109I | GCAGC | 9 cut(s) | 181, 427, 704, 934, 2400, 2610, 2820, 3030, 3240 |
| LweI | GCATC | 6 cut(s) | 472, 574, 1422, 1598, 1938, 2169 |
| MaeI | CTAG | 6 cut(s) | 789, 963, 1262, 1289, 1445, 2126 |
| MaeII | ACGT | 6 cut(s) | 42, 239, 604, 827, 882, 1663 |
| MaeIII | GTNAC | 2 cut(s) | 430, 1670 |
| MfeI | CAATTG | 2 cut(s) | 1566, 2298 |
| MflI | RGATCY | 7 cut(s) | 78, 2174, 2402, 2612, 2822, 3032, 3242 |
| MhlI | GDGCHC | 4 cut(s) | 106, 1179, 1399, 1777 |
| MlsI | TGGCCA | 1 cut(s) | 1876 |
| MluNI | TGGCCA | 1 cut(s) | 1876 |
| MlyI | GAGTC | 3 cut(s) | 200, 1277, 1537 |
| MmeI | TCCRAC | 6 cut(s) | 544, 613, 810, 1093, 1176, 1905 |
| Mox20I | TGGCCA | 1 cut(s) | 1876 |
| Mph1103I | ATGCAT | 1 cut(s) | 1437 |
| MroXI | GAANNNNTTC | 3 cut(s) | 780, 1467, 1527 |
| MscI | TGGCCA | 1 cut(s) | 1876 |
| MslI | CAYNNNNRTG | 9 cut(s) | 582, 1406, 2168, 2396, 2606, 2816, 3026, 3236, 3385 |
| Msp20I | TGGCCA | 1 cut(s) | 1876 |
| MspA1I | CMGCKG | 1 cut(s) | 428 |
| MspCI | CTTAAG | 4 cut(s) | 1015, 2003, 2039, 2144 |
| MspI | CCGG | 2 cut(s) | 453, 2156 |
| MspR9I | CCNGG | 8 cut(s) | 269, 609, 1494, 1583, 2157, 2651, 2861, 3071 |
| MunI | CAATTG | 2 cut(s) | 1566, 2298 |
| Mva1269I | GAATGC | 7 cut(s) | 925, 1748, 2391, 2601, 2811, 3021, 3231 |
| MvaI | CCWGG | 7 cut(s) | 269, 609, 1494, 1583, 2651, 2861, 3071 |
| MvnI | CGCG | 4 cut(s) | 384, 428, 466, 678 |
| NciI | CCSGG | 1 cut(s) | 2157 |
| NdeI | CATATG | 6 cut(s) | 768, 2397, 2607, 2817, 3027, 3237 |
| NlaIV | GGNNCC | 1 cut(s) | 303 |
| NmeAIII | GCCGAG | 4 cut(s) | 2409, 2619, 2829, 3249 |
| NruI | TCGCGA | 1 cut(s) | 466 |
| NsiI | ATGCAT | 1 cut(s) | 1437 |
| NspI | RCATGY | 3 cut(s) | 702, 1302, 3013 |
| PaeI | GCATGC | 1 cut(s) | 3013 |
| PagI | TCATGA | 1 cut(s) | 1656 |
| PceI | AGGCCT | 3 cut(s) | 2547, 2757, 3177 |
| PciSI | GCTCTTC | 1 cut(s) | 2369 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 200 |
| PctI | GAATGC | 7 cut(s) | 925, 1748, 2391, 2601, 2811, 3021, 3231 |
| PdmI | GAANNNNTTC | 3 cut(s) | 780, 1467, 1527 |
| PfeI | GAWTC | 9 cut(s) | 386, 461, 693, 792, 1586, 1703, 1757, 1897, 2122 |
| PfoI | TCCNGGA | 1 cut(s) | 1581 |
| Ple19I | CGATCG | 1 cut(s) | 207 |
| PleI | GAGTC | 3 cut(s) | 199, 1276, 1537 |
| PpsI | GAGTC | 3 cut(s) | 199, 1276, 1537 |
| Ppu21I | YACGTR | 1 cut(s) | 1664 |
| PshBI | ATTAAT | 6 cut(s) | 119, 2322, 2532, 2742, 2952, 3162 |
| PsiI | TTATAA | 1 cut(s) | 956 |
| Psp124BI | GAGCTC | 3 cut(s) | 106, 1399, 1777 |
| Psp6I | CCWGG | 7 cut(s) | 267, 607, 1492, 1581, 2649, 2859, 3069 |
| PspEI | GGTNACC | 1 cut(s) | 430 |
| PspFI | CCCAGC | 1 cut(s) | 456 |
| PspGI | CCWGG | 7 cut(s) | 267, 607, 1492, 1581, 2649, 2859, 3069 |
| PspN4I | GGNNCC | 1 cut(s) | 303 |
| PspPI | GGNCC | 7 cut(s) | 423, 2335, 2350, 2560, 2770, 2980, 3190 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1952 |
| PsuI | RGATCY | 7 cut(s) | 78, 2174, 2402, 2612, 2822, 3032, 3242 |
| PvuI | CGATCG | 1 cut(s) | 207 |
| RruI | TCGCGA | 1 cut(s) | 466 |
| RsaI | GTAC | 2 cut(s) | 765, 2065 |
| RsaNI | GTAC | 2 cut(s) | 764, 2064 |
| RseI | CAYNNNNRTG | 9 cut(s) | 582, 1406, 2168, 2396, 2606, 2816, 3026, 3236, 3385 |
| SacI | GAGCTC | 3 cut(s) | 106, 1399, 1777 |
| SacII | CCGCGG | 1 cut(s) | 429 |
| SapI | GCTCTTC | 1 cut(s) | 2369 |
| Sau96I | GGNCC | 7 cut(s) | 423, 2335, 2350, 2560, 2770, 2980, 3190 |
| SchI | GAGTC | 3 cut(s) | 200, 1277, 1537 |
| ScrFI | CCNGG | 8 cut(s) | 269, 609, 1494, 1583, 2157, 2651, 2861, 3071 |
| SduI | GDGCHC | 4 cut(s) | 106, 1179, 1399, 1777 |
| SfaNI | GCATC | 6 cut(s) | 472, 574, 1422, 1598, 1938, 2169 |
| SfcI | CTRYAG | 2 cut(s) | 97, 1557 |
| Sfr303I | CCGCGG | 1 cut(s) | 429 |
| SgrBI | CCGCGG | 1 cut(s) | 429 |
| SinI | GGWCC | 6 cut(s) | 423, 2350, 2560, 2770, 2980, 3190 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 582, 1406, 2168, 2396, 2606, 2816, 3026, 3236, 3385 |
| SphI | GCATGC | 1 cut(s) | 3013 |
| SseBI | AGGCCT | 3 cut(s) | 2547, 2757, 3177 |
| SsiI | CCGC | 4 cut(s) | 426, 428, 1217, 1808 |
| SspMI | CTAG | 6 cut(s) | 789, 963, 1262, 1289, 1445, 2126 |
| SstI | GAGCTC | 3 cut(s) | 106, 1399, 1777 |
| StuI | AGGCCT | 3 cut(s) | 2547, 2757, 3177 |
| StyD4I | CCNGG | 8 cut(s) | 267, 607, 1492, 1581, 2155, 2649, 2859, 3069 |
| StyI | CCWWGG | 1 cut(s) | 1120 |
| TaiI | ACGT | 6 cut(s) | 45, 242, 607, 830, 885, 1666 |
| TaqII | GACCGA | 1 cut(s) | 1407 |
| TatI | WGTACW | 2 cut(s) | 763, 2063 |
| TfiI | GAWTC | 9 cut(s) | 386, 461, 693, 792, 1586, 1703, 1757, 1897, 2122 |
| TscAI | CASTG | 7 cut(s) | 594, 634, 1333, 1805, 2557, 2767, 3187 |
| TspRI | CASTG | 7 cut(s) | 594, 634, 1333, 1805, 2557, 2767, 3187 |
| Vha464I | CTTAAG | 4 cut(s) | 1015, 2003, 2039, 2144 |
| VpaK11BI | GGWCC | 6 cut(s) | 423, 2350, 2560, 2770, 2980, 3190 |
| VspI | ATTAAT | 6 cut(s) | 119, 2322, 2532, 2742, 2952, 3162 |
| XapI | RAATTY | 5 cut(s) | 52, 351, 592, 1227, 1973 |
| XbaI | TCTAGA | 2 cut(s) | 788, 1288 |
| XceI | RCATGY | 3 cut(s) | 702, 1302, 3013 |
| XmiI | GTMKAC | 1 cut(s) | 66 |
| XmnI | GAANNNNTTC | 3 cut(s) | 780, 1467, 1527 |
| XspI | CTAG | 6 cut(s) | 789, 963, 1262, 1289, 1445, 2126 |
| Zsp2I | ATGCAT | 1 cut(s) | 1437 |