TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 16 - 164 | 1.7e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 234 - 299 | 4.3e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 432 - 557 | 1.2e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 499 - 584 | 1.5e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 566 - 628 | 5.9e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 586 - 735 | 8.7e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1755 |
| Acc16I | TGCGCA | 1 cut(s) | 2160 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2248 |
| AccBSI | CCGCTC | 1 cut(s) | 2356 |
| AccI | GTMKAC | 1 cut(s) | 240 |
| AccII | CGCG | 1 cut(s) | 456 |
| AciI | CCGC | 7 cut(s) | 369, 372, 925, 989, 1282, 1422, 2356 |
| AclI | AACGTT | 1 cut(s) | 358 |
| AclWI | GGATC | 3 cut(s) | 1023, 1282, 1792 |
| AcoI | YGGCCR | 1 cut(s) | 1910 |
| AcsI | RAATTY | 4 cut(s) | 126, 209, 419, 983 |
| AcuI | CTGAAG | 2 cut(s) | 457, 1062 |
| AcvI | CACGTG | 1 cut(s) | 409 |
| AdeI | CACNNNGTG | 1 cut(s) | 449 |
| AfaI | GTAC | 3 cut(s) | 1936, 1947, 2334 |
| AfeI | AGCGCT | 1 cut(s) | 567 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1132, 2248, 2299, 2300 |
| AflII | CTTAAG | 2 cut(s) | 1364, 1469 |
| AflIII | ACRYGT | 2 cut(s) | 406, 1659 |
| AjnI | CCWGG | 2 cut(s) | 2247, 2335 |
| AleI | CACNNNNGTG | 1 cut(s) | 1128 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 396, 428 |
| Alw21I | GWGCWC | 2 cut(s) | 829, 1745 |
| Alw26I | GTCTC | 5 cut(s) | 19, 1250, 1565, 1840, 2104 |
| AlwI | GGATC | 3 cut(s) | 1023, 1282, 1792 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1701, 1838 |
| Aor51HI | AGCGCT | 1 cut(s) | 567 |
| AoxI | GGCC | 2 cut(s) | 434, 1910 |
| ApeKI | GCWGC | 3 cut(s) | 41, 1231, 1485 |
| ApoI | RAATTY | 4 cut(s) | 126, 209, 419, 983 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 470, 485, 1635 |
| AspLEI | GCGC | 2 cut(s) | 568, 2161 |
| AspS9I | GGNCC | 3 cut(s) | 412, 435, 1405 |
| AsuC2I | CCSGG | 1 cut(s) | 47 |
| AsuHPI | GGTGA | 3 cut(s) | 1115, 1127, 2353 |
| AsuII | TTCGAA | 1 cut(s) | 1807 |
| AvaII | GGWCC | 2 cut(s) | 412, 1405 |
| BalI | TGGCCA | 1 cut(s) | 1912 |
| BanII | GRGCYC | 1 cut(s) | 829 |
| BbrPI | CACGTG | 1 cut(s) | 409 |
| BbsI | GAAGAC | 3 cut(s) | 1029, 1679, 2372 |
| Bbv12I | GWGCWC | 2 cut(s) | 829, 1745 |
| BbvI | GCAGC | 3 cut(s) | 28, 1243, 1497 |
| BceAI | ACGGC | 2 cut(s) | 990, 1649 |
| BciT130I | CCWGG | 2 cut(s) | 2249, 2337 |
| BcnI | CCSGG | 1 cut(s) | 47 |
| BcoDI | GTCTC | 5 cut(s) | 19, 1250, 1565, 1840, 2104 |
| BfaI | CTAG | 6 cut(s) | 299, 396, 692, 719, 815, 1373 |
| BfmI | CTRYAG | 1 cut(s) | 1669 |
| BfoI | RGCGCY | 1 cut(s) | 569 |
| BfrI | CTTAAG | 2 cut(s) | 1364, 1469 |
| BglII | AGATCT | 3 cut(s) | 1375, 1721, 2260 |
| BisI | GCNGC | 4 cut(s) | 42, 370, 1232, 1486 |
| BlpI | GCTNAGC | 1 cut(s) | 951 |
| BlsI | GCNGC | 4 cut(s) | 43, 371, 1233, 1487 |
| Bme1390I | CCNGG | 3 cut(s) | 47, 2249, 2337 |
| Bme18I | GGWCC | 2 cut(s) | 412, 1405 |
| BmgT120I | GGNCC | 3 cut(s) | 412, 435, 1405 |
| BmiI | GGNNCC | 1 cut(s) | 1896 |
| BmrFI | CCNGG | 3 cut(s) | 47, 2249, 2337 |
| BmsI | GCATC | 7 cut(s) | 100, 258, 448, 852, 937, 1311, 1978 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1242 |
| BpiI | GAAGAC | 3 cut(s) | 1029, 1679, 2372 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1303, 1335 |
| BpmI | CTGGAG | 1 cut(s) | 528 |
| Bpu10I | CCTNAGC | 1 cut(s) | 562 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 951 |
| Bpu14I | TTCGAA | 1 cut(s) | 1807 |
| BpuEI | CTTGAG | 5 cut(s) | 511, 878, 1315, 1375, 1559 |
| BpuMI | CCSGG | 1 cut(s) | 47 |
| BsaAI | YACGTR | 1 cut(s) | 409 |
| BsaBI | GATNNNNATC | 2 cut(s) | 9, 1968 |
| BsaJI | CCNNGG | 2 cut(s) | 45, 346 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1132, 2248, 2299, 2300 |
| Bse1I | ACTGG | 1 cut(s) | 1832 |
| Bse3DI | GCAATG | 2 cut(s) | 102, 723 |
| Bse8I | GATNNNNATC | 2 cut(s) | 9, 1968 |
| BseBI | CCWGG | 2 cut(s) | 2249, 2337 |
| BseDI | CCNNGG | 2 cut(s) | 45, 346 |
| BseGI | GGATG | 4 cut(s) | 55, 1202, 1412, 1993 |
| BseJI | GATNNNNATC | 2 cut(s) | 9, 1968 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1132, 2248, 2299, 2300 |
| BseMI | GCAATG | 2 cut(s) | 102, 723 |
| BseMII | CTCAG | 9 cut(s) | 600, 855, 942, 1058, 1118, 1341, 1724, 1755, 2105 |
| BseNI | ACTGG | 1 cut(s) | 1832 |
| BseRI | GAGGAG | 1 cut(s) | 677 |
| BseXI | GCAGC | 3 cut(s) | 28, 1243, 1497 |
| BsgI | GTGCAG | 1 cut(s) | 1480 |
| Bsh1236I | CGCG | 1 cut(s) | 456 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2218 |
| BshFI | GGCC | 2 cut(s) | 436, 1912 |
| BsiEI | CGRYCG | 1 cut(s) | 2218 |
| BsiHKAI | GWGCWC | 2 cut(s) | 829, 1745 |
| BsiSI | CCGG | 1 cut(s) | 47 |
| BslFI | GGGAC | 2 cut(s) | 905, 1148 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1132, 2248, 2299, 2300 |
| BsmAI | GTCTC | 5 cut(s) | 19, 1250, 1565, 1840, 2104 |
| BsmBI | CGTCTC | 2 cut(s) | 19, 1250 |
| BsmFI | GGGAC | 2 cut(s) | 905, 1148 |
| BsmI | GAATGC | 3 cut(s) | 485, 487, 1488 |
| BsnI | GGCC | 2 cut(s) | 436, 1912 |
| Bsp119I | TTCGAA | 1 cut(s) | 1807 |
| Bsp1286I | GDGCHC | 2 cut(s) | 829, 1745 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 951 |
| Bsp68I | TCGCGA | 1 cut(s) | 456 |
| BspACI | CCGC | 7 cut(s) | 369, 372, 925, 989, 1282, 1422, 2356 |
| BspANI | GGCC | 2 cut(s) | 436, 1912 |
| BspCNI | CTCAG | 9 cut(s) | 601, 854, 943, 1059, 1119, 1342, 1725, 1756, 2106 |
| BspFNI | CGCG | 1 cut(s) | 456 |
| BspHI | TCATGA | 2 cut(s) | 1153, 2061 |
| BspLI | GGNNCC | 1 cut(s) | 1896 |
| BspMAI | CTGCAG | 1 cut(s) | 1673 |
| BspPI | GGATC | 3 cut(s) | 1023, 1282, 1792 |
| BspT104I | TTCGAA | 1 cut(s) | 1807 |
| BspTI | CTTAAG | 2 cut(s) | 1364, 1469 |
| BsrBI | CCGCTC | 1 cut(s) | 2356 |
| BsrDI | GCAATG | 2 cut(s) | 102, 723 |
| BsrI | ACTGG | 1 cut(s) | 1832 |
| BssECI | CCNNGG | 2 cut(s) | 45, 346 |
| Bst2UI | CCWGG | 2 cut(s) | 2249, 2337 |
| Bst4CI | ACNGT | 8 cut(s) | 33, 149, 554, 1115, 1697, 1814, 2185, 2199 |
| Bst6I | CTCTTC | 1 cut(s) | 476 |
| BstAFI | CTTAAG | 2 cut(s) | 1364, 1469 |
| BstBAI | YACGTR | 1 cut(s) | 409 |
| BstBI | TTCGAA | 1 cut(s) | 1807 |
| BstC8I | GCNNGC | 3 cut(s) | 1199, 1284, 1879 |
| BstF5I | GGATG | 4 cut(s) | 55, 1202, 1412, 1993 |
| BstFNI | CGCG | 1 cut(s) | 456 |
| BstH2I | RGCGCY | 1 cut(s) | 569 |
| BstHHI | GCGC | 2 cut(s) | 568, 2161 |
| BstMAI | GTCTC | 5 cut(s) | 19, 1250, 1565, 1840, 2104 |
| BstMCI | CGRYCG | 1 cut(s) | 2218 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 565, 862, 1240, 1642 |
| BstNI | CCWGG | 2 cut(s) | 2249, 2337 |
| BstNSI | RCATGY | 3 cut(s) | 732, 1243, 1663 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1242 |
| BstSCI | CCNGG | 3 cut(s) | 45, 2247, 2335 |
| BstSFI | CTRYAG | 1 cut(s) | 1669 |
| BstUI | CGCG | 1 cut(s) | 456 |
| BstV1I | GCAGC | 3 cut(s) | 28, 1243, 1497 |
| BstV2I | GAAGAC | 3 cut(s) | 1029, 1679, 2372 |
| BstX2I | RGATCY | 6 cut(s) | 1028, 1274, 1375, 1721, 1784, 2260 |
| BstYI | RGATCY | 6 cut(s) | 1028, 1274, 1375, 1721, 1784, 2260 |
| BsuRI | GGCC | 2 cut(s) | 436, 1912 |
| BtgZI | GCGATG | 1 cut(s) | 471 |
| BtsCI | GGATG | 4 cut(s) | 55, 1202, 1412, 1993 |
| BtsIMutI | CAGTG | 2 cut(s) | 1819, 2375 |
| BtuMI | TCGCGA | 1 cut(s) | 456 |
| Cac8I | GCNNGC | 3 cut(s) | 1199, 1284, 1879 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1701, 1838 |
| CciI | TCATGA | 2 cut(s) | 1153, 2061 |
| CfoI | GCGC | 2 cut(s) | 568, 2161 |
| Cfr13I | GGNCC | 3 cut(s) | 412, 435, 1405 |
| CseI | GACGC | 1 cut(s) | 1232 |
| Csp6I | GTAC | 3 cut(s) | 1935, 1946, 2333 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1294, 1329 |
| CviQI | GTAC | 3 cut(s) | 1935, 1946, 2333 |
| DraI | TTTAAA | 1 cut(s) | 739 |
| DraIII | CACNNNGTG | 1 cut(s) | 449 |
| EaeI | YGGCCR | 1 cut(s) | 1910 |
| Eam1104I | CTCTTC | 1 cut(s) | 476 |
| EarI | CTCTTC | 1 cut(s) | 476 |
| EciI | GGCGGA | 2 cut(s) | 387, 1411 |
| Ecl136II | GAGCTC | 1 cut(s) | 827 |
| Eco24I | GRGCYC | 1 cut(s) | 829 |
| Eco32I | GATATC | 2 cut(s) | 1184, 1325 |
| Eco47I | GGWCC | 2 cut(s) | 412, 1405 |
| Eco47III | AGCGCT | 1 cut(s) | 567 |
| Eco53kI | GAGCTC | 1 cut(s) | 827 |
| Eco57I | CTGAAG | 2 cut(s) | 457, 1062 |
| Eco72I | CACGTG | 1 cut(s) | 409 |
| EcoICRI | GAGCTC | 1 cut(s) | 827 |
| EcoRII | CCWGG | 2 cut(s) | 2247, 2335 |
| EcoRV | GATATC | 2 cut(s) | 1184, 1325 |
| EcoT22I | ATGCAT | 2 cut(s) | 487, 867 |
| EcoT38I | GRGCYC | 1 cut(s) | 829 |
| Esp3I | CGTCTC | 2 cut(s) | 19, 1250 |
| FaqI | GGGAC | 2 cut(s) | 905, 1148 |
| FauI | CCCGC | 1 cut(s) | 1275 |
| FauNDI | CATATG | 1 cut(s) | 1494 |
| FblI | GTMKAC | 1 cut(s) | 240 |
| Fnu4HI | GCNGC | 4 cut(s) | 42, 370, 1232, 1486 |
| FokI | GGATG | 4 cut(s) | 62, 1189, 1399, 2000 |
| FriOI | GRGCYC | 1 cut(s) | 829 |
| Fsp4HI | GCNGC | 4 cut(s) | 42, 370, 1232, 1486 |
| FspAI | RTGCGCAY | 1 cut(s) | 2160 |
| FspBI | CTAG | 6 cut(s) | 299, 396, 692, 719, 815, 1373 |
| FspI | TGCGCA | 1 cut(s) | 2160 |
| GlaI | GCGC | 2 cut(s) | 567, 2160 |
| GluI | GCNGC | 4 cut(s) | 42, 370, 1232, 1486 |
| GsuI | CTGGAG | 1 cut(s) | 528 |
| HaeII | RGCGCY | 1 cut(s) | 569 |
| HaeIII | GGCC | 2 cut(s) | 436, 1912 |
| HapII | CCGG | 1 cut(s) | 47 |
| HgaI | GACGC | 1 cut(s) | 1232 |
| HhaI | GCGC | 2 cut(s) | 568, 2161 |
| Hin6I | GCGC | 2 cut(s) | 566, 2159 |
| HinP1I | GCGC | 2 cut(s) | 566, 2159 |
| HincII | GTYRAC | 1 cut(s) | 241 |
| HindII | GTYRAC | 1 cut(s) | 241 |
| HindIII | AAGCTT | 4 cut(s) | 854, 1044, 1853, 2047 |
| HinfI | GANTC | 9 cut(s) | 5, 69, 222, 323, 845, 899, 1222, 1474, 2065 |
| HpaII | CCGG | 1 cut(s) | 47 |
| HphI | GGTGA | 3 cut(s) | 1115, 1127, 2353 |
| Hpy166II | GTNNAC | 3 cut(s) | 241, 1408, 2361 |
| Hpy8I | GTNNAC | 3 cut(s) | 241, 1408, 2361 |
| HpyAV | CCTTC | 9 cut(s) | 167, 178, 185, 345, 352, 986, 1042, 1265, 2093 |
| HpyCH4III | ACNGT | 8 cut(s) | 33, 149, 554, 1115, 1697, 1814, 2185, 2199 |
| HpyCH4IV | ACGT | 2 cut(s) | 358, 408 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 565, 862, 1240, 1642 |
| HpySE526I | ACGT | 2 cut(s) | 358, 408 |
| HspAI | GCGC | 2 cut(s) | 566, 2159 |
| LmnI | GCTCC | 2 cut(s) | 581, 1900 |
| Lsp1109I | GCAGC | 3 cut(s) | 28, 1243, 1497 |
| LweI | GCATC | 7 cut(s) | 100, 258, 448, 852, 937, 1311, 1978 |
| MaeI | CTAG | 6 cut(s) | 299, 396, 692, 719, 815, 1373 |
| MaeII | ACGT | 2 cut(s) | 358, 408 |
| MaeIII | GTNAC | 8 cut(s) | 257, 284, 388, 593, 760, 832, 1250, 2147 |
| MbiI | CCGCTC | 1 cut(s) | 2356 |
| MfeI | CAATTG | 1 cut(s) | 1626 |
| MflI | RGATCY | 6 cut(s) | 1028, 1274, 1375, 1721, 1784, 2260 |
| MhlI | GDGCHC | 2 cut(s) | 829, 1745 |
| MlsI | TGGCCA | 1 cut(s) | 1912 |
| MluNI | TGGCCA | 1 cut(s) | 1912 |
| MlyI | GAGTC | 1 cut(s) | 839 |
| MmeI | TCCRAC | 4 cut(s) | 1230, 1548, 1773, 1956 |
| Mox20I | TGGCCA | 1 cut(s) | 1912 |
| Mph1103I | ATGCAT | 2 cut(s) | 487, 867 |
| MroXI | GAANNNNTTC | 3 cut(s) | 470, 485, 1635 |
| MscI | TGGCCA | 1 cut(s) | 1912 |
| MslI | CAYNNNNRTG | 4 cut(s) | 15, 266, 1128, 1493 |
| Msp20I | TGGCCA | 1 cut(s) | 1912 |
| MspCI | CTTAAG | 2 cut(s) | 1364, 1469 |
| MspI | CCGG | 1 cut(s) | 47 |
| MspR9I | CCNGG | 3 cut(s) | 47, 2249, 2337 |
| MunI | CAATTG | 1 cut(s) | 1626 |
| Mva1269I | GAATGC | 3 cut(s) | 485, 487, 1488 |
| MvaI | CCWGG | 2 cut(s) | 2249, 2337 |
| MvnI | CGCG | 1 cut(s) | 456 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 565, 862, 1240, 1642 |
| NciI | CCSGG | 1 cut(s) | 47 |
| NdeI | CATATG | 1 cut(s) | 1494 |
| NlaIV | GGNNCC | 1 cut(s) | 1896 |
| NmuCI | GTSAC | 1 cut(s) | 1250 |
| NruI | TCGCGA | 1 cut(s) | 456 |
| NsbI | TGCGCA | 1 cut(s) | 2160 |
| NsiI | ATGCAT | 2 cut(s) | 487, 867 |
| NspI | RCATGY | 3 cut(s) | 732, 1243, 1663 |
| NspV | TTCGAA | 1 cut(s) | 1807 |
| OliI | CACNNNNGTG | 1 cut(s) | 1128 |
| PagI | TCATGA | 2 cut(s) | 1153, 2061 |
| PciI | ACATGT | 1 cut(s) | 1659 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 237, 318 |
| PctI | GAATGC | 3 cut(s) | 485, 487, 1488 |
| PdmI | GAANNNNTTC | 3 cut(s) | 470, 485, 1635 |
| PfeI | GAWTC | 8 cut(s) | 5, 69, 222, 323, 899, 1222, 1474, 2065 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2248 |
| PfoI | TCCNGGA | 1 cut(s) | 2247 |
| PkrI | GCNGC | 4 cut(s) | 43, 371, 1233, 1487 |
| PleI | GAGTC | 1 cut(s) | 839 |
| PmaCI | CACGTG | 1 cut(s) | 409 |
| PmlI | CACGTG | 1 cut(s) | 409 |
| PpsI | GAGTC | 1 cut(s) | 839 |
| Ppu21I | YACGTR | 1 cut(s) | 409 |
| PscI | ACATGT | 1 cut(s) | 1659 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1242 |
| PsiI | TTATAA | 1 cut(s) | 1755 |
| Psp124BI | GAGCTC | 1 cut(s) | 829 |
| Psp1406I | AACGTT | 1 cut(s) | 358 |
| Psp6I | CCWGG | 2 cut(s) | 2247, 2335 |
| PspCI | CACGTG | 1 cut(s) | 409 |
| PspGI | CCWGG | 2 cut(s) | 2247, 2335 |
| PspN4I | GGNNCC | 1 cut(s) | 1896 |
| PspPI | GGNCC | 3 cut(s) | 412, 435, 1405 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 753, 785 |
| PstI | CTGCAG | 1 cut(s) | 1673 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1701, 1838 |
| PsuI | RGATCY | 6 cut(s) | 1028, 1274, 1375, 1721, 1784, 2260 |
| RruI | TCGCGA | 1 cut(s) | 456 |
| RsaI | GTAC | 3 cut(s) | 1936, 1947, 2334 |
| RsaNI | GTAC | 3 cut(s) | 1935, 1946, 2333 |
| RseI | CAYNNNNRTG | 4 cut(s) | 15, 266, 1128, 1493 |
| SacI | GAGCTC | 1 cut(s) | 829 |
| SalI | GTCGAC | 1 cut(s) | 239 |
| SatI | GCNGC | 4 cut(s) | 42, 370, 1232, 1486 |
| Sau96I | GGNCC | 3 cut(s) | 412, 435, 1405 |
| SchI | GAGTC | 1 cut(s) | 839 |
| ScrFI | CCNGG | 3 cut(s) | 47, 2249, 2337 |
| SduI | GDGCHC | 2 cut(s) | 829, 1745 |
| SfaNI | GCATC | 7 cut(s) | 100, 258, 448, 852, 937, 1311, 1978 |
| SfcI | CTRYAG | 1 cut(s) | 1669 |
| SfuI | TTCGAA | 1 cut(s) | 1807 |
| SinI | GGWCC | 2 cut(s) | 412, 1405 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 15, 266, 1128, 1493 |
| SmlI | CTYRAG | 7 cut(s) | 526, 857, 1294, 1364, 1390, 1469, 1538 |
| SmoI | CTYRAG | 7 cut(s) | 526, 857, 1294, 1364, 1390, 1469, 1538 |
| SsiI | CCGC | 7 cut(s) | 369, 372, 925, 989, 1282, 1422, 2356 |
| SspMI | CTAG | 6 cut(s) | 299, 396, 692, 719, 815, 1373 |
| SstI | GAGCTC | 1 cut(s) | 829 |
| StyD4I | CCNGG | 3 cut(s) | 45, 2247, 2335 |
| TaaI | ACNGT | 8 cut(s) | 33, 149, 554, 1115, 1697, 1814, 2185, 2199 |
| TaiI | ACGT | 2 cut(s) | 361, 411 |
| TaqI | TCGA | 6 cut(s) | 240, 321, 1321, 1728, 1807, 2068 |
| TaqII | GACCGA | 2 cut(s) | 1238, 2204 |
| TatI | WGTACW | 1 cut(s) | 1934 |
| TauI | GCSGC | 1 cut(s) | 372 |
| TfiI | GAWTC | 8 cut(s) | 5, 69, 222, 323, 899, 1222, 1474, 2065 |
| TscAI | CASTG | 2 cut(s) | 1819, 2375 |
| TseFI | GTSAC | 1 cut(s) | 1250 |
| TseI | GCWGC | 3 cut(s) | 41, 1231, 1485 |
| Tsp45I | GTSAC | 1 cut(s) | 1250 |
| TspGWI | ACGGA | 5 cut(s) | 404, 702, 995, 1415, 2373 |
| TspRI | CASTG | 2 cut(s) | 1819, 2375 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2248 |
| Vha464I | CTTAAG | 2 cut(s) | 1364, 1469 |
| VpaK11BI | GGWCC | 2 cut(s) | 412, 1405 |
| XapI | RAATTY | 4 cut(s) | 126, 209, 419, 983 |
| XbaI | TCTAGA | 1 cut(s) | 718 |
| XceI | RCATGY | 3 cut(s) | 732, 1243, 1663 |
| XmiI | GTMKAC | 1 cut(s) | 240 |
| XmnI | GAANNNNTTC | 3 cut(s) | 470, 485, 1635 |
| XspI | CTAG | 6 cut(s) | 299, 396, 692, 719, 815, 1373 |
| Zsp2I | ATGCAT | 2 cut(s) | 487, 867 |