Rh1AG381000
WRKY Family

WRKY Transcription Factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000067
Physical Location & Seq
Forward (+)
61210702 .. 61212743
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG381000.1

Sequence Viewer

Length: 1266 bp
ATGAATCAACTGCGCTGTTTGACGCGTCTTGAATTGGAAGCTTGCAAGAGACTGAAATCAGTACCAGAGCTTCCATCAACTATAAATTACATAGATGCTCATGACTGCAGCGCATTGGAAACCGTTGCAAAACCAAATACTCGTTGCTCTATGAATCTTTGCTTCACATTTTCTAATTGCCTCCAACTGGTACAAACGAATCTATTCAGAGATATTGTGGAAACTCATTCTCATTACCAGGGTAATTATCAACGTCCACTTTCCCTTAATATGTCTCTTCCCGGAAGTGAAATTCCTGATTGCGACTTCAAGGGTTCTCAGAATGATGCATCTGATCTATCCGCTCTATGTCATTGTGGCTTAAAAGGAAATCATGGTGAGAGCAGTTTCAGTTTTACTTTGCTTGATTGGGGTTTCACTACTGACAGAATCCTCGACGCGGATCATATGTTCCTGGCATATGTGCCATGGTCTGAATATCGCTTCACTGAAGAGGGAAAGCTGGTCAATGAACGGTATTTCACTGAGGCCACATTTGAGATTGTAGTAGAAAATAGAGTTGATAGACATGTTTTCGGGACAGTAATGAACCGCCATTGCATCACTAGTTGTGGAGTTCGTTTCTTTCATAGTAATTACATGGAGGAGCATAATGTAAGCATCACGGAAACCAAATCTCATCATGACAGCAGTGACATCCTTTCCGTCAGCAGGACAGGAAAGGAGGGCGCTGGGGTGCAGTTGGAGGAGTCTCTGGCACTGGTGATGCTTCCTGGGGTAGAAGCATTCTCGAGGTGGGAATGGCCCCAGAAAGTGGACCGGAGCTCTGCCAGCGAGAGCAAGAAGAGGCCAGGTTTGAAGGATCAGAGCAATTCCTACAAGAGAAGAAAGAATTCAGAGTCATGGACAGTGGTCTCACCTGAACTAACTGACGATGGTCAGGCTTGGAGAAAATATGGCCAGAAGATGATTCTGAATTCTCGACATCCTAGATGTTACTTCAGGTGTACCCACAAGTATGATCAGGGTTGCAACGCAACCAAACATGTTCAACAACTCCAAGACACCATGTACAAAACCACCTATTATGGAAACCACACATGCAGAGACATAATCAAGGGTCCACAGCTTATCATGGGCGCCTCCGAGCCTCGTAAATATTGGTGGATACCTAATCATCAAACTACTGTTAGCTCAGAAGCTGGGTCGATCACAAATTACAATAAGAAGGATCATCAGGGTAGTCATTTCTCTAGCTCATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRKY

Protein Analysis

421

Amino Acids

48.21

Weight (kDa)

7.01

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 311 - 368 1.7e-20 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1139
AccB7I CCANNNNNTGG 1 cut(s) 814
AccBSI CCGCTC 1 cut(s) 344
AccII CGCG 2 cut(s) 25, 440
AciI CCGC 3 cut(s) 342, 440, 592
AclWI GGATC 3 cut(s) 450, 870, 1239
AcoI YGGCCR 1 cut(s) 958
AcsI RAATTY 3 cut(s) 291, 892, 976
AcuI CTGAAG 2 cut(s) 510, 985
AcyI GRCGYC 1 cut(s) 1140
AfaI GTAC 4 cut(s) 63, 192, 1009, 1073
AfiI CCNNNNNNNGG 4 cut(s) 187, 439, 711, 814
AflIII ACRYGT 3 cut(s) 23, 568, 1045
AgsI TTSAA 4 cut(s) 32, 310, 859, 1052
AhlI ACTAGT 1 cut(s) 605
AjnI CCWGG 4 cut(s) 237, 453, 772, 850
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 8 cut(s) 41, 70, 502, 825, 1129, 1194, 1202, 1257
AluI AGCT 8 cut(s) 41, 70, 502, 825, 1129, 1194, 1202, 1257
Alw21I GWGCWC 1 cut(s) 827
Alw26I GTCTC 5 cut(s) 43, 279, 756, 919, 1101
AlwI GGATC 3 cut(s) 450, 870, 1239
AlwNI CAGNNNCTG 1 cut(s) 1202
Ama87I CYCGRG 1 cut(s) 790
AoxI GGCC 4 cut(s) 528, 803, 848, 958
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 3 cut(s) 291, 892, 976
Asp700I GAANNNNTTC 2 cut(s) 203, 892
AspLEI GCGC 4 cut(s) 15, 113, 731, 1142
AspS9I GGNCC 3 cut(s) 804, 817, 1121
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 3 cut(s) 389, 775, 909
AvaI CYCGRG 1 cut(s) 790
AvaII GGWCC 2 cut(s) 817, 1121
BalI TGGCCA 1 cut(s) 960
BanI GGYRCC 1 cut(s) 1139
BanII GRGCYC 1 cut(s) 827
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
Bbv12I GWGCWC 1 cut(s) 827
BbvI GCAGC 1 cut(s) 120
BccI CCATC 2 cut(s) 82, 929
BciT130I CCWGG 4 cut(s) 239, 455, 774, 852
BciVI GTATCC 1 cut(s) 1161
BclI TGATCA 1 cut(s) 1021
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 5 cut(s) 43, 279, 756, 919, 1101
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 3 cut(s) 606, 990, 1254
BfmI CTRYAG 1 cut(s) 106
BfoI RGCGCY 2 cut(s) 732, 1143
BfuI GTATCC 1 cut(s) 1161
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 5 cut(s) 239, 282, 455, 774, 852
Bme18I GGWCC 2 cut(s) 817, 1121
BmeT110I CYCGRG 1 cut(s) 790
BmgT120I GGNCC 3 cut(s) 804, 817, 1121
BmiI GGNNCC 3 cut(s) 806, 1122, 1141
BmrFI CCNGG 5 cut(s) 239, 282, 455, 774, 852
BmsI GCATC 6 cut(s) 85, 316, 338, 609, 669, 756
BoxI GACNNNNGTC 2 cut(s) 911, 936
BpuMI CCSGG 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 1140
BsaI GGTCTC 1 cut(s) 919
BsaJI CCNNGG 3 cut(s) 238, 467, 773
BsaWI WCCGGW 1 cut(s) 819
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 439, 711, 814
Bse1I ACTGG 2 cut(s) 192, 765
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 4 cut(s) 239, 455, 774, 852
BseDI CCNNGG 3 cut(s) 238, 467, 773
BseGI GGATG 2 cut(s) 696, 985
BseLI CCNNNNNNNGG 4 cut(s) 187, 439, 711, 814
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 3 cut(s) 332, 516, 1209
BseNI ACTGG 2 cut(s) 192, 765
BseRI GAGGAG 2 cut(s) 659, 761
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 2 cut(s) 731, 1202
BsgI GTGCAG 1 cut(s) 758
Bsh1236I CGCG 2 cut(s) 25, 440
BshFI GGCC 4 cut(s) 530, 805, 850, 960
BshNI GGYRCC 1 cut(s) 1139
BsiHKAI GWGCWC 1 cut(s) 827
BsiHKCI CYCGRG 1 cut(s) 790
BsiSI CCGG 2 cut(s) 282, 820
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 4 cut(s) 187, 439, 711, 814
BsmAI GTCTC 5 cut(s) 43, 279, 756, 919, 1101
BsmFI GGGAC 1 cut(s) 592
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 4 cut(s) 530, 805, 850, 960
Bso31I GGTCTC 1 cut(s) 919
BsoBI CYCGRG 1 cut(s) 790
Bsp1286I GDGCHC 1 cut(s) 827
Bsp1407I TGTACA 1 cut(s) 1071
Bsp143I GATC 6 cut(s) 334, 442, 862, 1021, 1209, 1231
Bsp19I CCATGG 1 cut(s) 467
BspACI CCGC 3 cut(s) 342, 440, 592
BspANI GGCC 4 cut(s) 530, 805, 850, 960
BspCNI CTCAG 3 cut(s) 331, 517, 1208
BspFNI CGCG 2 cut(s) 25, 440
BspHI TCATGA 2 cut(s) 100, 682
BspLI GGNNCC 3 cut(s) 806, 1122, 1141
BspMAI CTGCAG 1 cut(s) 110
BspPI GGATC 3 cut(s) 450, 870, 1239
BspT107I GGYRCC 1 cut(s) 1139
BspTNI GGTCTC 1 cut(s) 919
BsrBI CCGCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 595
BsrGI TGTACA 1 cut(s) 1071
BsrI ACTGG 2 cut(s) 192, 765
BssECI CCNNGG 3 cut(s) 238, 467, 773
BssMI GATC 6 cut(s) 334, 442, 862, 1021, 1209, 1231
BssNI GRCGYC 1 cut(s) 1140
BssT1I CCWWGG 1 cut(s) 467
Bst2UI CCWGG 4 cut(s) 239, 455, 774, 852
Bst4CI ACNGT 5 cut(s) 124, 516, 583, 910, 1189
Bst6I CTCTTC 3 cut(s) 282, 486, 839
BstACI GRCGYC 1 cut(s) 1140
BstAUI TGTACA 1 cut(s) 1071
BstC8I GCNNGC 2 cut(s) 43, 832
BstDEI CTNAG 3 cut(s) 318, 525, 1195
BstDSI CCRYGG 1 cut(s) 467
BstF5I GGATG 2 cut(s) 696, 985
BstFNI CGCG 2 cut(s) 25, 440
BstH2I RGCGCY 2 cut(s) 732, 1143
BstHHI GCGC 4 cut(s) 15, 113, 731, 1142
BstKTI GATC 6 cut(s) 337, 445, 865, 1024, 1212, 1234
BstMAI GTCTC 5 cut(s) 43, 279, 756, 919, 1101
BstMBI GATC 6 cut(s) 334, 442, 862, 1021, 1209, 1231
BstMWI GCNNNNNNNGC 1 cut(s) 831
BstNI CCWGG 4 cut(s) 239, 455, 774, 852
BstNSI RCATGY 3 cut(s) 572, 1049, 1104
BstPAI GACNNNNGTC 2 cut(s) 911, 936
BstSCI CCNGG 5 cut(s) 237, 280, 453, 772, 850
BstSFI CTRYAG 1 cut(s) 106
BstUI CGCG 2 cut(s) 25, 440
BstV1I GCAGC 1 cut(s) 120
BsuI GTATCC 1 cut(s) 1161
BsuRI GGCC 4 cut(s) 530, 805, 850, 960
BtgI CCRYGG 1 cut(s) 467
BtsCI GGATG 2 cut(s) 696, 985
BtsI GCAGTG 1 cut(s) 697
BtsIMutI CAGTG 5 cut(s) 486, 522, 697, 758, 915
Cac8I GCNNGC 2 cut(s) 43, 832
CaiI CAGNNNCTG 1 cut(s) 1202
CciI TCATGA 2 cut(s) 100, 682
CfoI GCGC 4 cut(s) 15, 113, 731, 1142
Cfr13I GGNCC 3 cut(s) 804, 817, 1121
CseI GACGC 3 cut(s) 14, 31, 446
Csp6I GTAC 4 cut(s) 62, 191, 1008, 1072
CviQI GTAC 4 cut(s) 62, 191, 1008, 1072
DdeI CTNAG 3 cut(s) 318, 525, 1195
DinI GGCGCC 1 cut(s) 1141
DpnI GATC 6 cut(s) 336, 444, 864, 1023, 1211, 1233
DpnII GATC 6 cut(s) 334, 442, 862, 1021, 1209, 1231
EaeI YGGCCR 1 cut(s) 958
Eam1104I CTCTTC 3 cut(s) 282, 486, 839
EarI CTCTTC 3 cut(s) 282, 486, 839
Ecl136II GAGCTC 1 cut(s) 825
Eco130I CCWWGG 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 827
Eco31I GGTCTC 1 cut(s) 919
Eco47I GGWCC 2 cut(s) 817, 1121
Eco53kI GAGCTC 1 cut(s) 825
Eco57I CTGAAG 2 cut(s) 510, 985
Eco88I CYCGRG 1 cut(s) 790
EcoICRI GAGCTC 1 cut(s) 825
EcoRI GAATTC 2 cut(s) 892, 976
EcoRII CCWGG 4 cut(s) 237, 453, 772, 850
EcoT14I CCWWGG 1 cut(s) 467
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 827
EgeI GGCGCC 1 cut(s) 1141
EheI GGCGCC 1 cut(s) 1141
ErhI CCWWGG 1 cut(s) 467
FaqI GGGAC 1 cut(s) 592
FauNDI CATATG 2 cut(s) 447, 460
FbaI TGATCA 1 cut(s) 1021
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 683, 972
FriOI GRGCYC 1 cut(s) 827
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 3 cut(s) 606, 990, 1254
GlaI GCGC 4 cut(s) 14, 112, 730, 1141
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 2 cut(s) 735, 1206
HaeII RGCGCY 2 cut(s) 732, 1143
HaeIII GGCC 4 cut(s) 530, 805, 850, 960
HapII CCGG 2 cut(s) 282, 820
HgaI GACGC 3 cut(s) 14, 31, 446
HhaI GCGC 4 cut(s) 15, 113, 731, 1142
Hin1I GRCGYC 1 cut(s) 1140
Hin6I GCGC 4 cut(s) 13, 111, 729, 1140
HinP1I GCGC 4 cut(s) 13, 111, 729, 1140
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 7 cut(s) 4, 154, 199, 429, 749, 899, 970
HpaII CCGG 2 cut(s) 282, 820
HphI GGTGA 3 cut(s) 389, 775, 909
Hpy166II GTNNAC 4 cut(s) 257, 817, 1008, 1124
Hpy188I TCNGA 9 cut(s) 209, 321, 334, 475, 867, 898, 975, 1147, 1198
Hpy188III TCNNGA 7 cut(s) 29, 101, 296, 577, 683, 790, 981
Hpy8I GTNNAC 4 cut(s) 257, 817, 1008, 1124
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 2 cut(s) 853, 1222
HpyCH4III ACNGT 5 cut(s) 124, 516, 583, 910, 1189
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 8 cut(s) 45, 108, 128, 329, 600, 739, 1032, 1104
HpyF10VI GCNNNNNNNGC 1 cut(s) 831
HpyF3I CTNAG 3 cut(s) 318, 525, 1195
HpySE526I ACGT 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 1140
HspAI GCGC 4 cut(s) 13, 111, 729, 1140
KasI GGCGCC 1 cut(s) 1139
Ksp22I TGATCA 1 cut(s) 1021
Kzo9I GATC 6 cut(s) 334, 442, 862, 1021, 1209, 1231
LmnI GCTCC 2 cut(s) 646, 822
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 6 cut(s) 85, 316, 338, 609, 669, 756
MaeI CTAG 3 cut(s) 606, 990, 1254
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 692, 995
MalI GATC 6 cut(s) 336, 444, 864, 1023, 1211, 1233
MbiI CCGCTC 1 cut(s) 344
MboI GATC 6 cut(s) 334, 442, 862, 1021, 1209, 1231
MboII GAAGA 5 cut(s) 269, 503, 856, 897, 976
MhlI GDGCHC 1 cut(s) 827
MlsI TGGCCA 1 cut(s) 960
MluI ACGCGT 1 cut(s) 23
MluNI TGGCCA 1 cut(s) 960
Mly113I GGCGCC 1 cut(s) 1140
MlyI GAGTC 2 cut(s) 758, 908
MmeI TCCRAC 2 cut(s) 208, 723
Mox20I TGGCCA 1 cut(s) 960
Mph1103I ATGCAT 1 cut(s) 331
MroXI GAANNNNTTC 2 cut(s) 203, 892
MscI TGGCCA 1 cut(s) 960
MseI TTAA 2 cut(s) 267, 362
MslI CAYNNNNRTG 1 cut(s) 1017
Msp20I TGGCCA 1 cut(s) 960
MspI CCGG 2 cut(s) 282, 820
MspR9I CCNGG 5 cut(s) 239, 282, 455, 774, 852
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 4 cut(s) 239, 455, 774, 852
MvnI CGCG 2 cut(s) 25, 440
MwoI GCNNNNNNNGC 1 cut(s) 831
NarI GGCGCC 1 cut(s) 1140
NciI CCSGG 1 cut(s) 282
NcoI CCATGG 1 cut(s) 467
NdeI CATATG 2 cut(s) 447, 460
NdeII GATC 6 cut(s) 334, 442, 862, 1021, 1209, 1231
NlaIV GGNNCC 3 cut(s) 806, 1122, 1141
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 3 cut(s) 572, 1049, 1104
PaeR7I CTCGAG 1 cut(s) 790
PagI TCATGA 2 cut(s) 100, 682
PciI ACATGT 2 cut(s) 568, 1045
PctI GAATGC 1 cut(s) 785
PdmI GAANNNNTTC 2 cut(s) 203, 892
PfeI GAWTC 5 cut(s) 4, 154, 199, 429, 970
PflMI CCANNNNNTGG 1 cut(s) 814
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 2 cut(s) 757, 907
PluTI GGCGCC 1 cut(s) 1143
PpsI GAGTC 2 cut(s) 757, 907
PscI ACATGT 2 cut(s) 568, 1045
PshAI GACNNNNGTC 2 cut(s) 911, 936
Psp124BI GAGCTC 1 cut(s) 827
Psp6I CCWGG 4 cut(s) 237, 453, 772, 850
PspFI CCCAGC 2 cut(s) 731, 1202
PspGI CCWGG 4 cut(s) 237, 453, 772, 850
PspN4I GGNNCC 3 cut(s) 806, 1122, 1141
PspPI GGNCC 3 cut(s) 804, 817, 1121
PstI CTGCAG 1 cut(s) 110
PstNI CAGNNNCTG 1 cut(s) 1202
RsaI GTAC 4 cut(s) 63, 192, 1009, 1073
RsaNI GTAC 4 cut(s) 62, 191, 1008, 1072
RseI CAYNNNNRTG 1 cut(s) 1017
SacI GAGCTC 1 cut(s) 827
SaqAI TTAA 2 cut(s) 267, 362
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 6 cut(s) 334, 442, 862, 1021, 1209, 1231
Sau96I GGNCC 3 cut(s) 804, 817, 1121
SchI GAGTC 2 cut(s) 758, 908
ScrFI CCNGG 5 cut(s) 239, 282, 455, 774, 852
SduI GDGCHC 1 cut(s) 827
SfaNI GCATC 6 cut(s) 85, 316, 338, 609, 669, 756
SfcI CTRYAG 1 cut(s) 106
SfoI GGCGCC 1 cut(s) 1141
Sfr274I CTCGAG 1 cut(s) 790
SinI GGWCC 2 cut(s) 817, 1121
SlaI CTCGAG 1 cut(s) 790
SmiMI CAYNNNNRTG 1 cut(s) 1017
SmlI CTYRAG 1 cut(s) 790
SmoI CTYRAG 1 cut(s) 790
SpeI ACTAGT 1 cut(s) 605
SsiI CCGC 3 cut(s) 342, 440, 592
SspDI GGCGCC 1 cut(s) 1139
SspI AATATT 1 cut(s) 1160
SspMI CTAG 3 cut(s) 606, 990, 1254
SstI GAGCTC 1 cut(s) 827
StyD4I CCNGG 5 cut(s) 237, 280, 453, 772, 850
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 5 cut(s) 124, 516, 583, 910, 1189
TaiI ACGT 1 cut(s) 256
TaqI TCGA 4 cut(s) 435, 791, 982, 1208
TatI WGTACW 1 cut(s) 1071
TfiI GAWTC 5 cut(s) 4, 154, 199, 429, 970
Tru1I TTAA 2 cut(s) 267, 362
Tru9I TTAA 2 cut(s) 267, 362
TscAI CASTG 5 cut(s) 493, 529, 697, 765, 915
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 5 cut(s) 17, 167, 525, 602, 617
TspGWI ACGGA 2 cut(s) 680, 694
TspRI CASTG 5 cut(s) 493, 529, 697, 765, 915
Van91I CCANNNNNTGG 1 cut(s) 814
VpaK11BI GGWCC 2 cut(s) 817, 1121
XapI RAATTY 3 cut(s) 291, 892, 976
XceI RCATGY 3 cut(s) 572, 1049, 1104
XhoI CTCGAG 1 cut(s) 790
XmnI GAANNNNTTC 2 cut(s) 203, 892
XspI CTAG 3 cut(s) 606, 990, 1254
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.