RLG00000028574

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
24525657 .. 24526106
450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028574

Sequence Viewer

Length: 450 bp
ATGTTGCTGGGATATACAAATTTCCGAAGTTTAGGAAAGTGGCCTAATGAACGCAAATACACCGAGGCCACATTTAGGATGGTGAAAGCGGACTATAAAGTCATCCGAGATGATTGGGAAGATTGCACTTGGATCACAAGTTGCGGGGTTCGGTTATTCTTCGACATGAATCCACCATTCTCTGGGGACCTTATTTGCAATTTGGAAAATAGAGAAACAGAGATAAGTAGTAAGAGAAAGAGAGAAACACTAGAGAAAGGTAAAGAGAAGATGGGGGTGGAGGTGCAGGAAGAGGGGGAGGAGTGCTCGGGAGGGCCAATATGCTGCTGCTTCTCGTCGAGTGGGTGCACCGTTTCGTTGAGGAAGAGACAGAGAGGAAGAGAAAGAGAGGCAGAGGGTGTTGCTGGAGCCACAGGATTAGAGTCAGAGGAAGCGGATGTCTCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.83

Weight (kDa)

5.13

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 182
AciI CCGC 3 cut(s) 89, 144, 434
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 75, 182
Alw21I GWGCWC 2 cut(s) 308, 350
Alw26I GTCTC 2 cut(s) 361, 445
Alw44I GTGCAC 1 cut(s) 346
AlwI GGATC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 3 cut(s) 41, 66, 314
ApaLI GTGCAC 1 cut(s) 346
ApeKI GCWGC 2 cut(s) 324, 327
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 187, 314
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 307
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 308, 350
BbvI GCAGC 2 cut(s) 311, 314
BccI CCATC 2 cut(s) 73, 265
BcoDI GTCTC 2 cut(s) 361, 445
BfaI CTAG 1 cut(s) 251
BisI GCNGC 2 cut(s) 325, 328
BlsI GCNGC 2 cut(s) 326, 329
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 307
BmgT120I GGNCC 2 cut(s) 187, 314
BmiI GGNNCC 2 cut(s) 188, 409
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpmI CTGGAG 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 182
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 3 cut(s) 84, 102, 442
BseLI CCNNNNNNNGG 2 cut(s) 75, 182
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 2 cut(s) 311, 314
BseYI CCCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 305
BshFI GGCC 3 cut(s) 43, 68, 316
BsiHKAI GWGCWC 2 cut(s) 308, 350
BsiHKCI CYCGRG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 75, 182
BsmAI GTCTC 2 cut(s) 361, 445
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 3 cut(s) 43, 68, 316
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 308, 350
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 3 cut(s) 89, 144, 434
BspANI GGCC 3 cut(s) 43, 68, 316
BspLI GGNNCC 2 cut(s) 188, 409
BspPI GGATC 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 3 cut(s) 285, 359, 373
BstDEI CTNAG 1 cut(s) 442
BstF5I GGATG 3 cut(s) 84, 102, 442
BstKTI GATC 1 cut(s) 135
BstMAI GTCTC 2 cut(s) 361, 445
BstMBI GATC 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 311, 314
BsuRI GGCC 3 cut(s) 43, 68, 316
BtsCI GGATG 3 cut(s) 84, 102, 442
Cfr13I GGNCC 2 cut(s) 187, 314
CviAII CATG 1 cut(s) 166
CviJI RGCY 4 cut(s) 43, 68, 316, 410
CviKI_1 RGCY 4 cut(s) 43, 68, 316, 410
DdeI CTNAG 1 cut(s) 442
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 285, 359, 373
EarI CTCTTC 3 cut(s) 285, 359, 373
Eco47I GGWCC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 187
FaeI CATG 1 cut(s) 169
FaiI YATR 4 cut(s) 15, 96, 167, 322
FaqI GGGAC 1 cut(s) 200
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 325, 328
FokI GGATG 2 cut(s) 89, 91
Fsp4HI GCNGC 2 cut(s) 325, 328
FspBI CTAG 1 cut(s) 251
GluI GCNGC 2 cut(s) 325, 328
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 3 cut(s) 43, 68, 316
Hin1II CATG 1 cut(s) 169
HinfI GANTC 2 cut(s) 169, 422
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 3 cut(s) 26, 107, 427
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4V TGCA 4 cut(s) 126, 198, 286, 348
HpyF3I CTNAG 1 cut(s) 442
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 5 cut(s) 168, 272, 390, 399, 429
Lsp1109I GCAGC 2 cut(s) 311, 314
MaeI CTAG 1 cut(s) 251
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 6 cut(s) 131, 151, 280, 302, 376, 390
MhlI GDGCHC 2 cut(s) 308, 350
MluCI AATT 2 cut(s) 19, 199
MlyI GAGTC 1 cut(s) 431
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 188, 409
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 2 cut(s) 326, 329
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 188, 409
PspPI GGNCC 2 cut(s) 187, 314
PspPPI RGGWCCY 1 cut(s) 187
SatI GCNGC 2 cut(s) 325, 328
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 2 cut(s) 187, 314
SchI GAGTC 1 cut(s) 431
SduI GDGCHC 2 cut(s) 308, 350
SetI ASST 4 cut(s) 192, 262, 285, 448
SinI GGWCC 1 cut(s) 187
Sse9I AATT 2 cut(s) 19, 199
SsiI CCGC 3 cut(s) 89, 144, 434
SspMI CTAG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 352
TaqI TCGA 2 cut(s) 162, 338
TasI AATT 2 cut(s) 19, 199
TfiI GAWTC 1 cut(s) 169
TseI GCWGC 2 cut(s) 324, 327
TspDTI ATGAA 2 cut(s) 63, 182
Van91I CCANNNNNTGG 1 cut(s) 182
VneI GTGCAC 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.