regulation of response to stimulus
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 94 - 164 | 3.2e-22 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 189 |
| AciI | CCGC | 2 cut(s) | 227, 481 |
| AcsI | RAATTY | 1 cut(s) | 237 |
| AfaI | GTAC | 3 cut(s) | 61, 147, 186 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 232, 233, 380 |
| AflII | CTTAAG | 1 cut(s) | 782 |
| AjnI | CCWGG | 3 cut(s) | 502, 591, 764 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 375, 407 |
| AluBI | AGCT | 4 cut(s) | 40, 164, 528, 635 |
| AluI | AGCT | 4 cut(s) | 40, 164, 528, 635 |
| Alw21I | GWGCWC | 2 cut(s) | 42, 608 |
| Alw26I | GTCTC | 3 cut(s) | 424, 502, 764 |
| Ama87I | CYCGRG | 1 cut(s) | 630 |
| AoxI | GGCC | 2 cut(s) | 13, 466 |
| ApoI | RAATTY | 1 cut(s) | 237 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 537 |
| AspLEI | GCGC | 1 cut(s) | 409 |
| AspS9I | GGNCC | 2 cut(s) | 14, 466 |
| AsuC2I | CCSGG | 1 cut(s) | 470 |
| AsuHPI | GGTGA | 1 cut(s) | 754 |
| AvaI | CYCGRG | 1 cut(s) | 630 |
| BaeGI | GKGCMC | 1 cut(s) | 729 |
| BanII | GRGCYC | 1 cut(s) | 42 |
| Bbv12I | GWGCWC | 2 cut(s) | 42, 608 |
| BccI | CCATC | 1 cut(s) | 260 |
| BceAI | ACGGC | 1 cut(s) | 579 |
| BciT130I | CCWGG | 3 cut(s) | 504, 593, 766 |
| BcnI | CCSGG | 1 cut(s) | 470 |
| BcoDI | GTCTC | 3 cut(s) | 424, 502, 764 |
| BfaI | CTAG | 2 cut(s) | 272, 299 |
| BfoI | RGCGCY | 1 cut(s) | 410 |
| BfrI | CTTAAG | 1 cut(s) | 782 |
| BmcAI | AGTACT | 1 cut(s) | 147 |
| Bme1390I | CCNGG | 4 cut(s) | 470, 504, 593, 766 |
| BmeT110I | CYCGRG | 1 cut(s) | 630 |
| BmgT120I | GGNCC | 2 cut(s) | 14, 466 |
| BmrFI | CCNGG | 4 cut(s) | 470, 504, 593, 766 |
| BmsI | GCATC | 1 cut(s) | 432 |
| BpmI | CTGGAG | 1 cut(s) | 458 |
| BpuEI | CTTGAG | 3 cut(s) | 114, 650, 751 |
| BpuMI | CCSGG | 1 cut(s) | 470 |
| Bsa29I | ATCGAT | 2 cut(s) | 99, 399 |
| BsaBI | GATNNNNATC | 2 cut(s) | 95, 540 |
| BsaJI | CCNNGG | 1 cut(s) | 503 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 499, 529 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 232, 233, 380 |
| Bse1I | ACTGG | 1 cut(s) | 441 |
| Bse8I | GATNNNNATC | 2 cut(s) | 95, 540 |
| BseBI | CCWGG | 3 cut(s) | 504, 593, 766 |
| BseCI | ATCGAT | 2 cut(s) | 99, 399 |
| BseDI | CCNNGG | 1 cut(s) | 503 |
| BseGI | GGATG | 2 cut(s) | 330, 794 |
| BseJI | GATNNNNATC | 2 cut(s) | 95, 540 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 232, 233, 380 |
| BseMII | CTCAG | 2 cut(s) | 435, 621 |
| BseNI | ACTGG | 1 cut(s) | 441 |
| BseSI | GKGCMC | 1 cut(s) | 729 |
| Bsh1236I | CGCG | 1 cut(s) | 189 |
| Bsh1285I | CGRYCG | 1 cut(s) | 403 |
| BshFI | GGCC | 2 cut(s) | 15, 468 |
| BshVI | ATCGAT | 2 cut(s) | 99, 399 |
| BsiEI | CGRYCG | 1 cut(s) | 403 |
| BsiHKAI | GWGCWC | 2 cut(s) | 42, 608 |
| BsiHKCI | CYCGRG | 1 cut(s) | 630 |
| BsiSI | CCGG | 1 cut(s) | 469 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 232, 233, 380 |
| BsmAI | GTCTC | 3 cut(s) | 424, 502, 764 |
| BsmBI | CGTCTC | 1 cut(s) | 502 |
| BsnI | GGCC | 2 cut(s) | 15, 468 |
| BsoBI | CYCGRG | 1 cut(s) | 630 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 608, 729 |
| Bsp143I | GATC | 4 cut(s) | 96, 100, 400, 669 |
| BspACI | CCGC | 2 cut(s) | 227, 481 |
| BspANI | GGCC | 2 cut(s) | 15, 468 |
| BspCNI | CTCAG | 2 cut(s) | 434, 620 |
| BspDI | ATCGAT | 2 cut(s) | 99, 399 |
| BspFNI | CGCG | 1 cut(s) | 189 |
| BspHI | TCATGA | 1 cut(s) | 745 |
| BspTI | CTTAAG | 1 cut(s) | 782 |
| BsrI | ACTGG | 1 cut(s) | 441 |
| BssECI | CCNNGG | 1 cut(s) | 503 |
| BssMI | GATC | 4 cut(s) | 96, 100, 400, 669 |
| Bst2UI | CCWGG | 3 cut(s) | 504, 593, 766 |
| Bst4CI | ACNGT | 3 cut(s) | 184, 359, 418 |
| BstAFI | CTTAAG | 1 cut(s) | 782 |
| BstDEI | CTNAG | 3 cut(s) | 421, 607, 656 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 378 |
| BstF5I | GGATG | 2 cut(s) | 330, 794 |
| BstFNI | CGCG | 1 cut(s) | 189 |
| BstH2I | RGCGCY | 1 cut(s) | 410 |
| BstHHI | GCGC | 1 cut(s) | 409 |
| BstKTI | GATC | 4 cut(s) | 99, 103, 403, 672 |
| BstMAI | GTCTC | 3 cut(s) | 424, 502, 764 |
| BstMBI | GATC | 4 cut(s) | 96, 100, 400, 669 |
| BstMCI | CGRYCG | 1 cut(s) | 403 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 572 |
| BstNI | CCWGG | 3 cut(s) | 504, 593, 766 |
| BstNSI | RCATGY | 1 cut(s) | 312 |
| BstSCI | CCNGG | 4 cut(s) | 468, 502, 591, 764 |
| BstSLI | GKGCMC | 1 cut(s) | 729 |
| BstUI | CGCG | 1 cut(s) | 189 |
| Bsu15I | ATCGAT | 2 cut(s) | 99, 399 |
| BsuRI | GGCC | 2 cut(s) | 15, 468 |
| BsuTUI | ATCGAT | 2 cut(s) | 99, 399 |
| BtsCI | GGATG | 2 cut(s) | 330, 794 |
| BtsIMutI | CAGTG | 1 cut(s) | 33 |
| CciI | TCATGA | 1 cut(s) | 745 |
| CfoI | GCGC | 1 cut(s) | 409 |
| Cfr13I | GGNCC | 2 cut(s) | 14, 466 |
| ClaI | ATCGAT | 2 cut(s) | 99, 399 |
| CsiI | ACCWGGT | 1 cut(s) | 764 |
| Csp6I | GTAC | 3 cut(s) | 60, 146, 185 |
| CviAII | CATG | 5 cut(s) | 309, 446, 545, 746, 806 |
| CviJI | RGCY | 8 cut(s) | 15, 40, 164, 468, 502, 528, 566, 635 |
| CviKI_1 | RGCY | 8 cut(s) | 15, 40, 164, 468, 502, 528, 566, 635 |
| CviQI | GTAC | 3 cut(s) | 60, 146, 185 |
| DdeI | CTNAG | 3 cut(s) | 421, 607, 656 |
| DpnI | GATC | 4 cut(s) | 98, 102, 402, 671 |
| DpnII | GATC | 4 cut(s) | 96, 100, 400, 669 |
| DraI | TTTAAA | 1 cut(s) | 319 |
| EciI | GGCGGA | 1 cut(s) | 470 |
| Ecl136II | GAGCTC | 1 cut(s) | 40 |
| Eco24I | GRGCYC | 1 cut(s) | 42 |
| Eco53kI | GAGCTC | 1 cut(s) | 40 |
| Eco88I | CYCGRG | 1 cut(s) | 630 |
| EcoICRI | GAGCTC | 1 cut(s) | 40 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 378 |
| EcoRII | CCWGG | 3 cut(s) | 502, 591, 764 |
| EcoT22I | ATGCAT | 1 cut(s) | 447 |
| EcoT38I | GRGCYC | 1 cut(s) | 42 |
| Esp3I | CGTCTC | 1 cut(s) | 502 |
| FaeI | CATG | 5 cut(s) | 312, 449, 548, 749, 809 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 278, 310 |
| FatI | CATG | 5 cut(s) | 308, 445, 544, 745, 805 |
| FauI | CCCGC | 1 cut(s) | 234 |
| FokI | GGATG | 2 cut(s) | 337, 781 |
| FriOI | GRGCYC | 1 cut(s) | 42 |
| FspBI | CTAG | 2 cut(s) | 272, 299 |
| GlaI | GCGC | 1 cut(s) | 408 |
| GsuI | CTGGAG | 1 cut(s) | 458 |
| HaeII | RGCGCY | 1 cut(s) | 410 |
| HaeIII | GGCC | 2 cut(s) | 15, 468 |
| HapII | CCGG | 1 cut(s) | 469 |
| HhaI | GCGC | 1 cut(s) | 409 |
| Hin1II | CATG | 5 cut(s) | 312, 449, 548, 749, 809 |
| Hin6I | GCGC | 1 cut(s) | 407 |
| HinP1I | GCGC | 1 cut(s) | 407 |
| HinfI | GANTC | 4 cut(s) | 449, 488, 649, 774 |
| HpaII | CCGG | 1 cut(s) | 469 |
| HphI | GGTGA | 1 cut(s) | 754 |
| Hpy188I | TCNGA | 1 cut(s) | 610 |
| Hpy188III | TCNNGA | 5 cut(s) | 43, 170, 299, 667, 746 |
| HpyAV | CCTTC | 1 cut(s) | 280 |
| HpyCH4III | ACNGT | 3 cut(s) | 184, 359, 418 |
| HpyCH4V | TGCA | 4 cut(s) | 308, 341, 445, 708 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 572 |
| HpyF3I | CTNAG | 3 cut(s) | 421, 607, 656 |
| Hsp92II | CATG | 5 cut(s) | 312, 449, 548, 749, 809 |
| HspAI | GCGC | 1 cut(s) | 407 |
| Kzo9I | GATC | 4 cut(s) | 96, 100, 400, 669 |
| LmnI | GCTCC | 3 cut(s) | 37, 161, 525 |
| LweI | GCATC | 1 cut(s) | 432 |
| MabI | ACCWGGT | 1 cut(s) | 764 |
| MaeI | CTAG | 2 cut(s) | 272, 299 |
| MaeIII | GTNAC | 1 cut(s) | 115 |
| MalI | GATC | 4 cut(s) | 98, 102, 402, 671 |
| MboI | GATC | 4 cut(s) | 96, 100, 400, 669 |
| MboII | GAAGA | 3 cut(s) | 209, 340, 545 |
| MhlI | GDGCHC | 3 cut(s) | 42, 608, 729 |
| MluCI | AATT | 3 cut(s) | 237, 348, 576 |
| MlyI | GAGTC | 1 cut(s) | 643 |
| MnlI | CCTC | 6 cut(s) | 102, 384, 421, 451, 726, 747 |
| Mph1103I | ATGCAT | 1 cut(s) | 447 |
| MroXI | GAANNNNTTC | 1 cut(s) | 537 |
| MseI | TTAA | 5 cut(s) | 252, 318, 579, 623, 783 |
| MspCI | CTTAAG | 1 cut(s) | 782 |
| MspI | CCGG | 1 cut(s) | 469 |
| MspR9I | CCNGG | 4 cut(s) | 470, 504, 593, 766 |
| MvaI | CCWGG | 3 cut(s) | 504, 593, 766 |
| MvnI | CGCG | 1 cut(s) | 189 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 572 |
| NciI | CCSGG | 1 cut(s) | 470 |
| NdeII | GATC | 4 cut(s) | 96, 100, 400, 669 |
| NlaIII | CATG | 5 cut(s) | 312, 449, 548, 749, 809 |
| NmuCI | GTSAC | 1 cut(s) | 115 |
| NsiI | ATGCAT | 1 cut(s) | 447 |
| NspI | RCATGY | 1 cut(s) | 312 |
| PaeR7I | CTCGAG | 1 cut(s) | 630 |
| PagI | TCATGA | 1 cut(s) | 745 |
| PdmI | GAANNNNTTC | 1 cut(s) | 537 |
| PfeI | GAWTC | 3 cut(s) | 449, 488, 774 |
| PfoI | TCCNGGA | 1 cut(s) | 591 |
| Ple19I | CGATCG | 1 cut(s) | 403 |
| PleI | GAGTC | 1 cut(s) | 643 |
| PpsI | GAGTC | 1 cut(s) | 643 |
| Psp124BI | GAGCTC | 1 cut(s) | 42 |
| Psp6I | CCWGG | 3 cut(s) | 502, 591, 764 |
| PspGI | CCWGG | 3 cut(s) | 502, 591, 764 |
| PspPI | GGNCC | 2 cut(s) | 14, 466 |
| PspXI | VCTCGAGB | 1 cut(s) | 630 |
| PvuI | CGATCG | 1 cut(s) | 403 |
| RsaI | GTAC | 3 cut(s) | 61, 147, 186 |
| RsaNI | GTAC | 3 cut(s) | 60, 146, 185 |
| SacI | GAGCTC | 1 cut(s) | 42 |
| SaqAI | TTAA | 5 cut(s) | 252, 318, 579, 623, 783 |
| Sau3AI | GATC | 4 cut(s) | 96, 100, 400, 669 |
| Sau96I | GGNCC | 2 cut(s) | 14, 466 |
| ScaI | AGTACT | 1 cut(s) | 147 |
| SchI | GAGTC | 1 cut(s) | 643 |
| ScrFI | CCNGG | 4 cut(s) | 470, 504, 593, 766 |
| SduI | GDGCHC | 3 cut(s) | 42, 608, 729 |
| SetI | ASST | 9 cut(s) | 42, 136, 166, 530, 637, 720, 737, 758, 767 |
| SexAI | ACCWGGT | 1 cut(s) | 764 |
| SfaNI | GCATC | 1 cut(s) | 432 |
| Sfr274I | CTCGAG | 1 cut(s) | 630 |
| SlaI | CTCGAG | 1 cut(s) | 630 |
| SmlI | CTYRAG | 5 cut(s) | 129, 630, 665, 730, 782 |
| SmoI | CTYRAG | 5 cut(s) | 129, 630, 665, 730, 782 |
| Sse9I | AATT | 3 cut(s) | 237, 348, 576 |
| SsiI | CCGC | 2 cut(s) | 227, 481 |
| SspMI | CTAG | 2 cut(s) | 272, 299 |
| SstI | GAGCTC | 1 cut(s) | 42 |
| StyD4I | CCNGG | 4 cut(s) | 468, 502, 591, 764 |
| TaaI | ACNGT | 3 cut(s) | 184, 359, 418 |
| TaqI | TCGA | 5 cut(s) | 99, 107, 264, 399, 631 |
| TasI | AATT | 3 cut(s) | 237, 348, 576 |
| TatI | WGTACW | 1 cut(s) | 145 |
| TfiI | GAWTC | 3 cut(s) | 449, 488, 774 |
| Tru1I | TTAA | 5 cut(s) | 252, 318, 579, 623, 783 |
| Tru9I | TTAA | 5 cut(s) | 252, 318, 579, 623, 783 |
| TscAI | CASTG | 1 cut(s) | 33 |
| TseFI | GTSAC | 1 cut(s) | 115 |
| Tsp45I | GTSAC | 1 cut(s) | 115 |
| TspDTI | ATGAA | 5 cut(s) | 341, 441, 530, 546, 794 |
| TspRI | CASTG | 1 cut(s) | 33 |
| Vha464I | CTTAAG | 1 cut(s) | 782 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 378 |
| XapI | RAATTY | 1 cut(s) | 237 |
| XbaI | TCTAGA | 1 cut(s) | 298 |
| XceI | RCATGY | 1 cut(s) | 312 |
| XhoI | CTCGAG | 1 cut(s) | 630 |
| XmnI | GAANNNNTTC | 1 cut(s) | 537 |
| XspI | CTAG | 2 cut(s) | 272, 299 |
| ZrmI | AGTACT | 1 cut(s) | 147 |
| Zsp2I | ATGCAT | 1 cut(s) | 447 |