pycom02g22170

RESISTANCE protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
20306153 .. 20306809
657 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g22170.1

Sequence Viewer

Length: 657 bp
ATGGAAAGATTAAGAGAGCTTCGCTTGGATGAGACATCTGTTAAAGGCCTTGCCCCATCAATTTCGTCTCTTCAAAACCTTGAGATTTTGAGTCTAAAGCAATGCAAGAAACTTCATAGGCTTCCAAGCAGCATTCATATGAGATCTCTTCGAACCCTTAATCTTTCCAACTGCTCAAAGCTGTATAATTTTTCAGAAATTCCTGAAGTTATGAACCTATTAGAGCTTAATTTAGATGAGACTGCAATTTCAGAACTGCCCTCGTCCGTCAAAAATTTTACAGGCCTCGTTACCCTGAGCCTGAAGGATTGCAGAAGATTAAAGATTCTTCCAAGCAGCTTTCATATGAGATCTCTTAAAGCCCTGAATGTTTCTGGCTGCTCAAATCTGAGGAATTTTCCAGAGTTTCTAAAAGTTACGGAGAACCTAACAGAGCTTCATTTAGATTGGACGCTAGTTGCAGAAGACTCTCCCGACCGAGAAAATTTGAAGTTTTCAGGGATTGCAATTGAAGAATTGCCATCCATAATTTATAGTCTTACGGGGCTTGCTACCTTGACGCTACGGTATAACAAAGACTTTGAGAGTCTTACAAGCAGGCATTTGTCAGCTCAAGTCCCTAAAGTATCTCTCTCTTTCTGGTTGTACAGAGCTTAA

Protein Analysis

219

Amino Acids

24.81

Weight (kDa)

8.67

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_13 PF23286 48 - 132 2.8e-14 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 48 - 148 8.7e-10 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 198, 274, 394, 484
AcuI CTGAAG 2 cut(s) 225, 323
AfaI GTAC 1 cut(s) 647
AgsI TTSAA 3 cut(s) 74, 490, 512
AluBI AGCT 7 cut(s) 19, 181, 226, 339, 436, 611, 653
AluI AGCT 7 cut(s) 19, 181, 226, 339, 436, 611, 653
Alw26I GTCTC 3 cut(s) 26, 72, 233
AoxI GGCC 2 cut(s) 46, 283
ApeKI GCWGC 3 cut(s) 129, 336, 378
ApoI RAATTY 4 cut(s) 198, 274, 394, 484
AsuII TTCGAA 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 471
BbvI GCAGC 3 cut(s) 141, 348, 365
BccI CCATC 2 cut(s) 64, 529
BcoDI GTCTC 3 cut(s) 26, 72, 233
BfaI CTAG 1 cut(s) 455
BglII AGATCT 2 cut(s) 143, 350
BisI GCNGC 3 cut(s) 130, 337, 379
BlsI GCNGC 3 cut(s) 131, 338, 380
BpiI GAAGAC 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 151
BpuEI CTTGAG 2 cut(s) 101, 597
Bse3DI GCAATG 1 cut(s) 107
BseGI GGATG 2 cut(s) 34, 521
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 287, 380
BseXI GCAGC 3 cut(s) 141, 348, 365
Bsh1285I CGRYCG 1 cut(s) 478
BshFI GGCC 2 cut(s) 48, 285
BsiEI CGRYCG 1 cut(s) 478
BslFI GGGAC 1 cut(s) 602
BsmAI GTCTC 3 cut(s) 26, 72, 233
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 602
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 2 cut(s) 48, 285
Bsp119I TTCGAA 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 645
Bsp143I GATC 2 cut(s) 143, 350
BspANI GGCC 2 cut(s) 48, 285
BspCNI CTCAG 2 cut(s) 288, 381
BspT104I TTCGAA 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 107
BsrGI TGTACA 1 cut(s) 645
BssMI GATC 2 cut(s) 143, 350
Bst4CI ACNGT 1 cut(s) 567
Bst6I CTCTTC 2 cut(s) 75, 153
BstAUI TGTACA 1 cut(s) 645
BstBI TTCGAA 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 549, 599
BstDEI CTNAG 2 cut(s) 296, 389
BstF5I GGATG 2 cut(s) 34, 521
BstKTI GATC 2 cut(s) 146, 353
BstMAI GTCTC 3 cut(s) 26, 72, 233
BstMBI GATC 2 cut(s) 143, 350
BstMCI CGRYCG 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 141, 348, 365
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 2 cut(s) 143, 350
BstYI RGATCY 2 cut(s) 143, 350
BsuRI GGCC 2 cut(s) 48, 285
BtsCI GGATG 2 cut(s) 34, 521
Cac8I GCNNGC 2 cut(s) 549, 599
CseI GACGC 2 cut(s) 460, 568
Csp6I GTAC 1 cut(s) 646
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 2 cut(s) 296, 389
DpnI GATC 2 cut(s) 145, 352
DpnII GATC 2 cut(s) 143, 350
Eam1104I CTCTTC 2 cut(s) 75, 153
EarI CTCTTC 2 cut(s) 75, 153
Eco147I AGGCCT 2 cut(s) 48, 285
Eco57I CTGAAG 2 cut(s) 225, 323
Esp3I CGTCTC 1 cut(s) 72
FaqI GGGAC 1 cut(s) 602
FauNDI CATATG 2 cut(s) 138, 345
Fnu4HI GCNGC 3 cut(s) 130, 337, 379
FokI GGATG 2 cut(s) 41, 508
Fsp4HI GCNGC 3 cut(s) 130, 337, 379
FspBI CTAG 1 cut(s) 455
GluI GCNGC 3 cut(s) 130, 337, 379
HaeIII GGCC 2 cut(s) 48, 285
HgaI GACGC 2 cut(s) 460, 568
HinfI GANTC 4 cut(s) 91, 325, 467, 586
Hpy188I TCNGA 3 cut(s) 196, 253, 390
Hpy188III TCNNGA 3 cut(s) 203, 401, 473
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 567
HpyCH4V TGCA 5 cut(s) 105, 245, 312, 461, 506
HpyF3I CTNAG 2 cut(s) 296, 389
Kzo9I GATC 2 cut(s) 143, 350
Lsp1109I GCAGC 3 cut(s) 141, 348, 365
MaeI CTAG 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 289, 415
MalI GATC 2 cut(s) 145, 352
MboI GATC 2 cut(s) 143, 350
MboII GAAGA 6 cut(s) 62, 140, 320, 327, 476, 524
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 2 cut(s) 143, 350
MlyI GAGTC 3 cut(s) 100, 461, 595
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 3 cut(s) 271, 296, 384
MseI TTAA 7 cut(s) 11, 42, 159, 228, 320, 357, 655
MslI CAYNNNNRTG 1 cut(s) 137
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 132
NdeI CATATG 2 cut(s) 138, 345
NdeII GATC 2 cut(s) 143, 350
NspV TTCGAA 1 cut(s) 151
PceI AGGCCT 2 cut(s) 48, 285
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 3 cut(s) 131, 338, 380
PleI GAGTC 3 cut(s) 99, 461, 594
PpsI GAGTC 3 cut(s) 99, 461, 594
PsuI RGATCY 2 cut(s) 143, 350
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 7 cut(s) 11, 42, 159, 228, 320, 357, 655
SatI GCNGC 3 cut(s) 130, 337, 379
Sau3AI GATC 2 cut(s) 143, 350
SchI GAGTC 3 cut(s) 100, 461, 595
SfuI TTCGAA 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 2 cut(s) 80, 612
SmoI CTYRAG 2 cut(s) 80, 612
SseBI AGGCCT 2 cut(s) 48, 285
SspMI CTAG 1 cut(s) 455
StuI AGGCCT 2 cut(s) 48, 285
TaaI ACNGT 1 cut(s) 567
TaqI TCGA 1 cut(s) 151
TaqII GACCGA 1 cut(s) 492
TatI WGTACW 1 cut(s) 645
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 7 cut(s) 11, 42, 159, 228, 320, 357, 655
Tru9I TTAA 7 cut(s) 11, 42, 159, 228, 320, 357, 655
TseI GCWGC 3 cut(s) 129, 336, 378
TspDTI ATGAA 5 cut(s) 104, 125, 227, 332, 428
TspGWI ACGGA 2 cut(s) 256, 434
XapI RAATTY 4 cut(s) 198, 274, 394, 484
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.