Rorug01G0286500

Conserved oligomeric Golgi complex subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
40094524 .. 40128205
33682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0286500.1

Sequence Viewer

Length: 807 bp
ATGGGGGATTTGTACGCTTTGGATTTCGATGGAGTTATCTGCGATAGCTGCGGAGAGAGCTCCGTCTCTGCTGTGAAGGCTGCTAAAGTGAGATGGCCAGCTCTGTTCAACGGTGTTGATTCGGCTTTAGAGAATTGGGTTGTTGATCAAATGCACGTAGTGAGACCTGTGGTGGAAACTGGGTATGAGAATCTTTTACTTGTGAGGTTACTTCTGGAGATGAGATTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTCACAGTGGAAGGAATATTGGAGAAGTGGTCAGCATTGAAGCCTGTGATTATGGAGGAATGGGGTGAGGAAAGGGATCCTCTTGTAAATCTGTTCGGAAAGGTCAGGGATGAGTGGATGGACCAGGACTTGAATACTTGGATTGGTGCAAATAGATTATATCCAGGTGTATCTGATGCTCTAAGATTTGCAAGCTCGACAATATATATAGTCACCACAAAGCAGAGCCGATTTGCTGACGCTTTACTGCGAGAACTTGCAGGAGTTACAATACCACCTGAAAGAATATTTGGTCTTGGATCTGGTCCTAAGGTAGAAGTATTGAAGATGCTTCAGAAGAAACCAGAACATCAAGGGCTGAAACTGCACTTTGTGGAAGATAGACTGGCAACCCTAAAGAATGTTATTAAAGAACCTGAATTGGATGGTTGGAGCTTGTATCTAGGGGATTGGGGGTACAATACAGAGGAAGAGAGAGACGAAGCTTCTAGAATCTCCAGGATTCAGATTCTTCAGCTTTCTGACTTCAGCACAAAGTTGAAGTAG

Protein Analysis

268

Amino Acids

30.28

Weight (kDa)

5.06

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 3 cut(s) 332, 345, 568
AcoI YGGCCR 1 cut(s) 95
AcuI CTGAAG 3 cut(s) 578, 758, 772
AdeI CACNNNGTG 2 cut(s) 160, 634
AfaI GTAC 2 cut(s) 14, 719
AgsI TTSAA 5 cut(s) 109, 301, 394, 586, 802
AjnI CCWGG 3 cut(s) 384, 424, 758
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 7 cut(s) 48, 60, 101, 456, 696, 746, 778
AluI AGCT 7 cut(s) 48, 60, 101, 456, 696, 746, 778
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 3 cut(s) 70, 157, 732
AlwI GGATC 3 cut(s) 332, 345, 568
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 48, 80
AspS9I GGNCC 2 cut(s) 382, 566
AsuHPI GGTGA 2 cut(s) 338, 466
AvaII GGWCC 2 cut(s) 382, 566
AxyI CCTNAGG 1 cut(s) 570
BalI TGGCCA 1 cut(s) 97
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 62, 264
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 35, 67
BccI CCATC 4 cut(s) 23, 87, 373, 680
BciT130I CCWGG 3 cut(s) 386, 426, 760
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 3 cut(s) 70, 157, 732
BfaI CTAG 2 cut(s) 704, 750
BisI GCNGC 2 cut(s) 49, 81
BlsI GCNGC 2 cut(s) 50, 82
Bme1390I CCNGG 3 cut(s) 386, 426, 760
Bme18I GGWCC 2 cut(s) 382, 566
BmgT120I GGNCC 2 cut(s) 382, 566
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 3 cut(s) 386, 426, 760
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 427, 579
BmuI ACTGGG 1 cut(s) 189
BpmI CTGGAG 2 cut(s) 236, 742
BsaAI YACGTR 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse1I ACTGG 2 cut(s) 184, 651
Bse21I CCTNAGG 1 cut(s) 570
BseBI CCWGG 3 cut(s) 386, 426, 760
BseGI GGATG 3 cut(s) 376, 384, 691
BseNI ACTGG 2 cut(s) 184, 651
BseXI GCAGC 2 cut(s) 35, 67
BsgI GTGCAG 1 cut(s) 611
BshFI GGCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 62
BsmAI GTCTC 3 cut(s) 70, 157, 732
BsmBI CGTCTC 2 cut(s) 70, 732
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 62, 264
Bsp143I GATC 3 cut(s) 145, 337, 560
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 3 cut(s) 332, 345, 568
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 184, 651
BssMI GATC 3 cut(s) 145, 337, 560
Bst2UI CCWGG 3 cut(s) 386, 426, 760
Bst4CI ACNGT 2 cut(s) 113, 268
Bst6I CTCTTC 1 cut(s) 726
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 99, 454
BstDEI CTNAG 2 cut(s) 443, 570
BstF5I GGATG 3 cut(s) 376, 384, 691
BstKTI GATC 3 cut(s) 148, 340, 563
BstMAI GTCTC 3 cut(s) 70, 157, 732
BstMBI GATC 3 cut(s) 145, 337, 560
BstMWI GCNNNNNNNGC 4 cut(s) 48, 57, 77, 625
BstNI CCWGG 3 cut(s) 386, 426, 760
BstSCI CCNGG 3 cut(s) 384, 424, 758
BstV1I GCAGC 2 cut(s) 35, 67
BstX2I RGATCY 2 cut(s) 337, 560
BstYI RGATCY 2 cut(s) 337, 560
Bsu36I CCTNAGG 1 cut(s) 570
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 3 cut(s) 376, 384, 691
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 99, 454
Cfr13I GGNCC 2 cut(s) 382, 566
CseI GACGC 1 cut(s) 509
Csp6I GTAC 2 cut(s) 13, 718
CviQI GTAC 2 cut(s) 13, 718
DdeI CTNAG 2 cut(s) 443, 570
DpnI GATC 3 cut(s) 147, 339, 562
DpnII GATC 3 cut(s) 145, 337, 560
DraIII CACNNNGTG 2 cut(s) 160, 634
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 62, 264
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 382, 566
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 3 cut(s) 578, 758, 772
Eco81I CCTNAGG 1 cut(s) 570
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 3 cut(s) 384, 424, 758
EcoT38I GRGCYC 2 cut(s) 62, 264
Esp3I CGTCTC 2 cut(s) 70, 732
FaiI YATR 7 cut(s) 186, 236, 314, 421, 466, 468, 470
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 49, 81
FokI GGATG 3 cut(s) 383, 391, 698
FriOI GRGCYC 2 cut(s) 62, 264
Fsp4HI GCNGC 2 cut(s) 49, 81
FspBI CTAG 2 cut(s) 704, 750
GluI GCNGC 2 cut(s) 49, 81
GsuI CTGGAG 2 cut(s) 236, 742
HaeIII GGCC 1 cut(s) 97
HgaI GACGC 1 cut(s) 509
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 5 cut(s) 119, 190, 753, 763, 769
HphI GGTGA 2 cut(s) 338, 466
Hpy188I TCNGA 5 cut(s) 359, 436, 597, 768, 784
Hpy188III TCNNGA 2 cut(s) 215, 750
HpyAV CCTTC 4 cut(s) 70, 240, 251, 266
HpyCH4III ACNGT 2 cut(s) 113, 268
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 6 cut(s) 154, 254, 410, 452, 521, 628
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 57, 77, 625
HpyF3I CTNAG 2 cut(s) 443, 570
HpySE526I ACGT 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 145, 337, 560
LmnI GCTCC 2 cut(s) 65, 693
Lsp1109I GCAGC 2 cut(s) 35, 67
LweI GCATC 2 cut(s) 427, 579
MaeI CTAG 2 cut(s) 704, 750
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 3 cut(s) 207, 472, 526
MalI GATC 3 cut(s) 147, 339, 562
MboI GATC 3 cut(s) 145, 337, 560
MboII GAAGA 5 cut(s) 598, 610, 650, 743, 764
MflI RGATCY 2 cut(s) 337, 560
MhlI GDGCHC 2 cut(s) 62, 264
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 2 cut(s) 133, 680
MluNI TGGCCA 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 671
MnlI CCTC 5 cut(s) 198, 310, 322, 351, 721
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 669
Msp20I TGGCCA 1 cut(s) 97
MspR9I CCNGG 3 cut(s) 386, 426, 760
MvaI CCWGG 3 cut(s) 386, 426, 760
MwoI GCNNNNNNNGC 4 cut(s) 48, 57, 77, 625
NdeII GATC 3 cut(s) 145, 337, 560
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 472
PfeI GAWTC 5 cut(s) 119, 190, 753, 763, 769
PfoI TCCNGGA 1 cut(s) 758
PkrI GCNGC 2 cut(s) 50, 82
Ppu21I YACGTR 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 3 cut(s) 384, 424, 758
PspGI CCWGG 3 cut(s) 384, 424, 758
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 382, 566
PsuI RGATCY 2 cut(s) 337, 560
RsaI GTAC 2 cut(s) 14, 719
RsaNI GTAC 2 cut(s) 13, 718
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 2 cut(s) 49, 81
Sau3AI GATC 3 cut(s) 145, 337, 560
Sau96I GGNCC 2 cut(s) 382, 566
ScrFI CCNGG 3 cut(s) 386, 426, 760
SduI GDGCHC 2 cut(s) 62, 264
SfaNI GCATC 2 cut(s) 427, 579
SinI GGWCC 2 cut(s) 382, 566
Sse9I AATT 2 cut(s) 133, 680
SsiI CCGC 1 cut(s) 51
SspI AATATT 2 cut(s) 279, 549
SspMI CTAG 2 cut(s) 704, 750
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 384, 424, 758
TaaI ACNGT 2 cut(s) 113, 268
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 27, 458
TasI AATT 2 cut(s) 133, 680
TfiI GAWTC 5 cut(s) 119, 190, 753, 763, 769
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 2 cut(s) 48, 80
Tsp45I GTSAC 1 cut(s) 472
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 2 cut(s) 382, 566
XbaI TCTAGA 1 cut(s) 749
XspI CTAG 2 cut(s) 704, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.