TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 55 - 127 | 1.3e-18 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 386 |
| AcsI | RAATTY | 1 cut(s) | 462 |
| AfaI | GTAC | 1 cut(s) | 57 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 272 |
| AflIII | ACRYGT | 1 cut(s) | 127 |
| AgsI | TTSAA | 1 cut(s) | 437 |
| AjiI | CACGTC | 1 cut(s) | 128 |
| AluBI | AGCT | 4 cut(s) | 35, 144, 299, 446 |
| AluI | AGCT | 4 cut(s) | 35, 144, 299, 446 |
| Alw21I | GWGCWC | 1 cut(s) | 301 |
| AlwI | GGATC | 1 cut(s) | 386 |
| ApoI | RAATTY | 1 cut(s) | 462 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 117, 149, 203, 235 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 429 |
| AsuC2I | CCSGG | 1 cut(s) | 396 |
| AsuHPI | GGTGA | 1 cut(s) | 335 |
| BanII | GRGCYC | 1 cut(s) | 301 |
| Bbv12I | GWGCWC | 1 cut(s) | 301 |
| BccI | CCATC | 1 cut(s) | 143 |
| BcnI | CCSGG | 1 cut(s) | 396 |
| BfaI | CTAG | 1 cut(s) | 182 |
| Bme1390I | CCNGG | 1 cut(s) | 396 |
| BmgBI | CACGTC | 1 cut(s) | 128 |
| BmrFI | CCNGG | 1 cut(s) | 396 |
| BmsI | GCATC | 1 cut(s) | 324 |
| BpuEI | CTTGAG | 1 cut(s) | 350 |
| BpuMI | CCSGG | 1 cut(s) | 396 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 272 |
| BseGI | GGATG | 1 cut(s) | 163 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 272 |
| BsiHKAI | GWGCWC | 1 cut(s) | 301 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 272 |
| Bsp1286I | GDGCHC | 1 cut(s) | 301 |
| Bsp1407I | TGTACA | 1 cut(s) | 55 |
| Bsp143I | GATC | 1 cut(s) | 391 |
| BspHI | TCATGA | 1 cut(s) | 235 |
| BspPI | GGATC | 1 cut(s) | 386 |
| BsrGI | TGTACA | 1 cut(s) | 55 |
| BssMI | GATC | 1 cut(s) | 391 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 323 |
| Bst6I | CTCTTC | 1 cut(s) | 266 |
| BstAUI | TGTACA | 1 cut(s) | 55 |
| BstC8I | GCNNGC | 1 cut(s) | 142 |
| BstDEI | CTNAG | 1 cut(s) | 278 |
| BstF5I | GGATG | 1 cut(s) | 163 |
| BstKTI | GATC | 1 cut(s) | 394 |
| BstMBI | GATC | 1 cut(s) | 391 |
| BstNSI | RCATGY | 1 cut(s) | 195 |
| BstSCI | CCNGG | 1 cut(s) | 394 |
| BstX2I | RGATCY | 1 cut(s) | 391 |
| BstYI | RGATCY | 1 cut(s) | 391 |
| BtrI | CACGTC | 1 cut(s) | 128 |
| BtsCI | GGATG | 1 cut(s) | 163 |
| Cac8I | GCNNGC | 1 cut(s) | 142 |
| CciI | TCATGA | 1 cut(s) | 235 |
| Csp6I | GTAC | 1 cut(s) | 56 |
| CviAII | CATG | 4 cut(s) | 59, 192, 236, 338 |
| CviJI | RGCY | 5 cut(s) | 35, 144, 249, 299, 446 |
| CviKI_1 | RGCY | 5 cut(s) | 35, 144, 249, 299, 446 |
| CviQI | GTAC | 1 cut(s) | 56 |
| DdeI | CTNAG | 1 cut(s) | 278 |
| DpnI | GATC | 1 cut(s) | 393 |
| DpnII | GATC | 1 cut(s) | 391 |
| Eam1104I | CTCTTC | 1 cut(s) | 266 |
| EarI | CTCTTC | 1 cut(s) | 266 |
| Ecl136II | GAGCTC | 1 cut(s) | 299 |
| Eco24I | GRGCYC | 1 cut(s) | 301 |
| Eco53kI | GAGCTC | 1 cut(s) | 299 |
| EcoICRI | GAGCTC | 1 cut(s) | 299 |
| EcoT22I | ATGCAT | 1 cut(s) | 339 |
| EcoT38I | GRGCYC | 1 cut(s) | 301 |
| FaeI | CATG | 4 cut(s) | 62, 195, 239, 341 |
| FaiI | YATR | 9 cut(s) | 60, 72, 147, 176, 193, 237, 270, 339, 415 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 417, 449 |
| FatI | CATG | 4 cut(s) | 58, 191, 235, 337 |
| FokI | GGATG | 1 cut(s) | 170 |
| FriOI | GRGCYC | 1 cut(s) | 301 |
| FspBI | CTAG | 1 cut(s) | 182 |
| HapII | CCGG | 1 cut(s) | 395 |
| Hin1II | CATG | 4 cut(s) | 62, 195, 239, 341 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HinfI | GANTC | 1 cut(s) | 380 |
| HpaII | CCGG | 1 cut(s) | 395 |
| HphI | GGTGA | 1 cut(s) | 335 |
| Hpy166II | GTNNAC | 3 cut(s) | 292, 326, 373 |
| Hpy188I | TCNGA | 1 cut(s) | 319 |
| Hpy188III | TCNNGA | 3 cut(s) | 110, 182, 236 |
| Hpy8I | GTNNAC | 3 cut(s) | 292, 326, 373 |
| HpyAV | CCTTC | 1 cut(s) | 393 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 323 |
| HpyCH4IV | ACGT | 2 cut(s) | 104, 127 |
| HpyCH4V | TGCA | 2 cut(s) | 191, 337 |
| HpyF3I | CTNAG | 1 cut(s) | 278 |
| HpySE526I | ACGT | 2 cut(s) | 104, 127 |
| Hsp92II | CATG | 4 cut(s) | 62, 195, 239, 341 |
| Kzo9I | GATC | 1 cut(s) | 391 |
| LmnI | GCTCC | 1 cut(s) | 32 |
| LpnPI | CCDG | 2 cut(s) | 335, 408 |
| LweI | GCATC | 1 cut(s) | 324 |
| MaeI | CTAG | 1 cut(s) | 182 |
| MaeII | ACGT | 2 cut(s) | 104, 127 |
| MaeIII | GTNAC | 1 cut(s) | 223 |
| MalI | GATC | 1 cut(s) | 393 |
| MboI | GATC | 1 cut(s) | 391 |
| MboII | GAAGA | 4 cut(s) | 94, 253, 425, 437 |
| MflI | RGATCY | 1 cut(s) | 391 |
| MhlI | GDGCHC | 1 cut(s) | 301 |
| MluCI | AATT | 1 cut(s) | 462 |
| MmeI | TCCRAC | 1 cut(s) | 57 |
| MnlI | CCTC | 1 cut(s) | 267 |
| Mph1103I | ATGCAT | 1 cut(s) | 339 |
| MroXI | GAANNNNTTC | 1 cut(s) | 429 |
| MseI | TTAA | 3 cut(s) | 201, 305, 466 |
| MspI | CCGG | 1 cut(s) | 395 |
| MspR9I | CCNGG | 1 cut(s) | 396 |
| NciI | CCSGG | 1 cut(s) | 396 |
| NdeII | GATC | 1 cut(s) | 391 |
| NlaIII | CATG | 4 cut(s) | 62, 195, 239, 341 |
| NsiI | ATGCAT | 1 cut(s) | 339 |
| NspI | RCATGY | 1 cut(s) | 195 |
| PagI | TCATGA | 1 cut(s) | 235 |
| PdmI | GAANNNNTTC | 1 cut(s) | 429 |
| PfeI | GAWTC | 1 cut(s) | 380 |
| PfoI | TCCNGGA | 1 cut(s) | 394 |
| Psp124BI | GAGCTC | 1 cut(s) | 301 |
| PsuI | RGATCY | 1 cut(s) | 391 |
| RsaI | GTAC | 1 cut(s) | 57 |
| RsaNI | GTAC | 1 cut(s) | 56 |
| SacI | GAGCTC | 1 cut(s) | 301 |
| SaqAI | TTAA | 3 cut(s) | 201, 305, 466 |
| Sau3AI | GATC | 1 cut(s) | 391 |
| ScrFI | CCNGG | 1 cut(s) | 396 |
| SduI | GDGCHC | 1 cut(s) | 301 |
| SetI | ASST | 8 cut(s) | 37, 107, 130, 146, 301, 404, 413, 448 |
| SfaNI | GCATC | 1 cut(s) | 324 |
| SmlI | CTYRAG | 1 cut(s) | 329 |
| SmoI | CTYRAG | 1 cut(s) | 329 |
| Sse9I | AATT | 1 cut(s) | 462 |
| SspMI | CTAG | 1 cut(s) | 182 |
| SstI | GAGCTC | 1 cut(s) | 301 |
| StyD4I | CCNGG | 1 cut(s) | 394 |
| TaaI | ACNGT | 2 cut(s) | 55, 323 |
| TaiI | ACGT | 2 cut(s) | 107, 130 |
| TasI | AATT | 1 cut(s) | 462 |
| TatI | WGTACW | 1 cut(s) | 55 |
| TfiI | GAWTC | 1 cut(s) | 380 |
| Tru1I | TTAA | 3 cut(s) | 201, 305, 466 |
| Tru9I | TTAA | 3 cut(s) | 201, 305, 466 |
| TspDTI | ATGAA | 4 cut(s) | 174, 224, 252, 438 |
| XapI | RAATTY | 1 cut(s) | 462 |
| XbaI | TCTAGA | 1 cut(s) | 181 |
| XceI | RCATGY | 1 cut(s) | 195 |
| XmnI | GAANNNNTTC | 1 cut(s) | 429 |
| XspI | CTAG | 1 cut(s) | 182 |
| Zsp2I | ATGCAT | 1 cut(s) | 339 |