MD07G1015300.v1.1

RESISTANCE protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
1368171 .. 1369678
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1015300.v1.1.491

Sequence Viewer

Length: 1002 bp
ATGGTTCGGAGCTGGAGACACGCTCTTAGAACGACCCCCCATCTACCCGGCTGGGTTTCGGGAGACTTTGGGGATGATGCGAAGCTTATTGAGGAGATTGTGGAAGATGTTTCTAGAAAATTGATCCACATCTCATCAACATCAAGCAAAGATAATGACTTGGTTGAAATGGATTCTCATATGCTTGAAATGCGTGTATTATTAAATCATCCTGGATTTAAAACGAATGATGTTCGCATTGTTGGAATATGGGGTATGGGTGGTTTAGGCAAAACAACCATCGCTAGAGCTGTTTATGATGAAATCTCATGTCAATTTGAAGCTAGTTGCTTCCTTGAAAATATCAGGGAAGGTTTCATGAAGCAAGGCACACTACATATGCAGGCAGAACTTCTATCTAGTATCTCGAACAACAAGGTGGAGAGTTCCGACATTTCGAAGAAAGGTTTCCAGGTGATGTTAAATAGCCTAGGTCAGAGAAAAGTTCTTATTGTTCTGGATGATGTGGACAGATTAGATCAAATTGAAGCTTTACTTGGAGGGCAACATTCCTTTTATGGTGGAAGTAGAATCATTATAACAACTAGAGTGGGGCATTTACTAAGATTAGCTGATGCTGTATATAGGCCTAATGTTTTGAGTGATCTTGGAGCTTTGAAACTCTTTAGGCAGTACGCCTTCAGAACAAACCAACCCACCAGAGATTATGACAATCTTTCGAGTCGTGTCATACAATATGCTCAAGGTCTGCCTTTCGCACTCAAAGTCTTGGGAGCATTTCTTGATAACAAAATTGTACCCGAGTGGGAGAATGTGTTAGAAAAAATAAGGAAAATCCCGCAAAGGGGAATTCATGATGTGCTTAAAACAAGTTTCGATGGACTAGATGACACAGAGAAGGACATCTTTCTAGATATTGCATGTTTCTTTAAAGGGATGAAGAAAGACTATGCAACCGAAATTCTGGACAGTTGTGGTTTCTATATCCTCATACAGGAATAA

Protein Analysis

334

Amino Acids

37.67

Weight (kDa)

6.02

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 74 - 230 4.1e-16 NB-ARC domain
WHD_ROQ1 PF23282 298 - 329 4e-06 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AciI CCGC 1 cut(s) 839
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 2 cut(s) 849, 960
AcuI CTGAAG 1 cut(s) 664
AfaI GTAC 2 cut(s) 674, 798
AfiI CCNNNNNNNGG 3 cut(s) 844, 845, 994
AgsI TTSAA 6 cut(s) 167, 188, 320, 338, 527, 658
AjnI CCWGG 2 cut(s) 211, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 7 cut(s) 12, 85, 290, 323, 530, 611, 653
AluI AGCT 7 cut(s) 12, 85, 290, 323, 530, 611, 653
Alw26I GTCTC 2 cut(s) 10, 57
AlwI GGATC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 800
AoxI GGCC 1 cut(s) 626
ApoI RAATTY 2 cut(s) 849, 960
Asp700I GAANNNNTTC 1 cut(s) 446
AspA2I CCTAGG 1 cut(s) 469
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 466
AsuII TTCGAA 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 800
AvrII CCTAGG 1 cut(s) 469
BccI CCATC 3 cut(s) 48, 287, 872
BciT130I CCWGG 2 cut(s) 213, 452
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 10, 57
BfaI CTAG 8 cut(s) 114, 285, 324, 399, 470, 585, 884, 911
BlnI CCTAGG 1 cut(s) 469
Bme1390I CCNGG 3 cut(s) 48, 213, 452
BmeT110I CYCGRG 1 cut(s) 800
BmrFI CCNGG 3 cut(s) 48, 213, 452
BmsI GCATC 2 cut(s) 67, 604
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 726
BpuMI CCSGG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 800, 830
Bsc4I CCNNNNNNNGG 3 cut(s) 844, 845, 994
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 2 cut(s) 213, 452
BseDI CCNNGG 1 cut(s) 469
BseGI GGATG 4 cut(s) 79, 208, 505, 942
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 3 cut(s) 844, 845, 994
BseRI GAGGAG 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 51
BshFI GGCC 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 800
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 3 cut(s) 844, 845, 994
BsmAI GTCTC 2 cut(s) 10, 57
BsnI GGCC 1 cut(s) 628
BsoBI CYCGRG 1 cut(s) 800
Bsp119I TTCGAA 1 cut(s) 437
Bsp143I GATC 3 cut(s) 123, 517, 643
BspACI CCGC 1 cut(s) 839
BspANI GGCC 1 cut(s) 628
BspHI TCATGA 2 cut(s) 357, 853
BspPI GGATC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 469
BssMI GATC 3 cut(s) 123, 517, 643
BssT1I CCWWGG 1 cut(s) 469
Bst2UI CCWGG 2 cut(s) 213, 452
Bst4CI ACNGT 1 cut(s) 971
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 26, 602
BstENI CCTNNNNNAGG 1 cut(s) 992
BstF5I GGATG 4 cut(s) 79, 208, 505, 942
BstKTI GATC 3 cut(s) 126, 520, 646
BstMAI GTCTC 2 cut(s) 10, 57
BstMBI GATC 3 cut(s) 123, 517, 643
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNI CCWGG 2 cut(s) 213, 452
BstNSI RCATGY 1 cut(s) 924
BstSCI CCNGG 3 cut(s) 46, 211, 450
BsuRI GGCC 1 cut(s) 628
BtgZI GCGATG 1 cut(s) 265
BtsCI GGATG 4 cut(s) 79, 208, 505, 942
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 2 cut(s) 357, 853
Csp6I GTAC 2 cut(s) 673, 797
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 4 cut(s) 309, 358, 854, 921
CviQI GTAC 2 cut(s) 673, 797
DdeI CTNAG 2 cut(s) 26, 602
DpnI GATC 3 cut(s) 125, 519, 645
DpnII GATC 3 cut(s) 123, 517, 643
DraI TTTAAA 2 cut(s) 220, 931
Eco130I CCWWGG 1 cut(s) 469
Eco147I AGGCCT 1 cut(s) 628
Eco57I CTGAAG 1 cut(s) 664
Eco88I CYCGRG 1 cut(s) 800
EcoNI CCTNNNNNAGG 1 cut(s) 992
EcoRI GAATTC 1 cut(s) 849
EcoRII CCWGG 2 cut(s) 211, 450
EcoT14I CCWWGG 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 4 cut(s) 312, 361, 857, 924
FalI AAGNNNNNCTT 4 cut(s) 519, 551, 890, 922
FatI CATG 4 cut(s) 308, 357, 853, 920
FauI CCCGC 1 cut(s) 846
FauNDI CATATG 2 cut(s) 180, 378
FokI GGATG 4 cut(s) 86, 195, 512, 949
FspBI CTAG 8 cut(s) 114, 285, 324, 399, 470, 585, 884, 911
GsaI CCCAGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 1 cut(s) 628
HapII CCGG 1 cut(s) 48
Hin1II CATG 4 cut(s) 312, 361, 857, 924
HindIII AAGCTT 2 cut(s) 83, 528
HinfI GANTC 3 cut(s) 173, 570, 721
HpaII CCGG 1 cut(s) 48
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 4 cut(s) 9, 430, 477, 683
Hpy188III TCNNGA 9 cut(s) 60, 114, 358, 406, 497, 782, 854, 911, 965
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 3 cut(s) 344, 688, 892
HpyCH4III ACNGT 1 cut(s) 971
HpyCH4V TGCA 3 cut(s) 382, 920, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 26, 602
Hsp92II CATG 4 cut(s) 312, 361, 857, 924
Kzo9I GATC 3 cut(s) 123, 517, 643
LmnI GCTCC 3 cut(s) 9, 650, 773
LweI GCATC 2 cut(s) 67, 604
MaeI CTAG 8 cut(s) 114, 285, 324, 399, 470, 585, 884, 911
MalI GATC 3 cut(s) 125, 519, 645
MboI GATC 3 cut(s) 123, 517, 643
MboII GAAGA 3 cut(s) 116, 451, 952
MluCI AATT 6 cut(s) 119, 314, 522, 792, 849, 960
MlyI GAGTC 1 cut(s) 730
MmeI TCCRAC 2 cut(s) 223, 453
MnlI CCTC 3 cut(s) 85, 533, 998
MroXI GAANNNNTTC 1 cut(s) 446
MseI TTAA 5 cut(s) 203, 219, 461, 864, 930
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 3 cut(s) 48, 213, 452
MvaI CCWGG 2 cut(s) 213, 452
MwoI GCNNNNNNNGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 48
NdeI CATATG 2 cut(s) 180, 378
NdeII GATC 3 cut(s) 123, 517, 643
NlaIII CATG 4 cut(s) 312, 361, 857, 924
NspI RCATGY 1 cut(s) 924
NspV TTCGAA 1 cut(s) 437
PagI TCATGA 2 cut(s) 357, 853
PceI AGGCCT 1 cut(s) 628
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 2 cut(s) 173, 570
PfoI TCCNGGA 1 cut(s) 211
PleI GAGTC 1 cut(s) 729
PpsI GAGTC 1 cut(s) 729
PsiI TTATAA 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 211, 450
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 2 cut(s) 211, 450
RsaI GTAC 2 cut(s) 674, 798
RsaNI GTAC 2 cut(s) 673, 797
SaqAI TTAA 5 cut(s) 203, 219, 461, 864, 930
Sau3AI GATC 3 cut(s) 123, 517, 643
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 3 cut(s) 48, 213, 452
SfaNI GCATC 2 cut(s) 67, 604
SfuI TTCGAA 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 741
SmoI CTYRAG 1 cut(s) 741
Sse9I AATT 6 cut(s) 119, 314, 522, 792, 849, 960
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 1 cut(s) 839
SspMI CTAG 8 cut(s) 114, 285, 324, 399, 470, 585, 884, 911
StuI AGGCCT 1 cut(s) 628
StyD4I CCNGG 3 cut(s) 46, 211, 450
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 971
TaqI TCGA 4 cut(s) 407, 437, 719, 876
TasI AATT 6 cut(s) 119, 314, 522, 792, 849, 960
TfiI GAWTC 2 cut(s) 173, 570
Tru1I TTAA 5 cut(s) 203, 219, 461, 864, 930
Tru9I TTAA 5 cut(s) 203, 219, 461, 864, 930
TspDTI ATGAA 5 cut(s) 315, 346, 374, 842, 953
XagI CCTNNNNNAGG 1 cut(s) 992
XapI RAATTY 2 cut(s) 849, 960
XbaI TCTAGA 2 cut(s) 113, 910
XceI RCATGY 1 cut(s) 924
XmaJI CCTAGG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 8 cut(s) 114, 285, 324, 399, 470, 585, 884, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.