TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 14 - 174 | 2.5e-47 | TIR domain |
| TIR_2 | PF13676 | 17 - 112 | 4.8e-16 | TIR domain |
| WHD_ROQ1 | PF23282 | 272 - 337 | 3.8e-22 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 490 - 560 | 1.9e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 553 - 645 | 1.6e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 561 - 646 | 2.9e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 627 - 688 | 6.8e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 644 - 797 | 7.7e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_8 | PF13855 | 713 - 768 | 1e-06 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2355 |
| Acc36I | ACCTGC | 1 cut(s) | 2257 |
| AccB1I | GGYRCC | 2 cut(s) | 310, 2083 |
| AccBSI | CCGCTC | 1 cut(s) | 1225 |
| AccI | GTMKAC | 1 cut(s) | 1125 |
| AciI | CCGC | 2 cut(s) | 908, 1225 |
| AclWI | GGATC | 2 cut(s) | 326, 1563 |
| AcoI | YGGCCR | 1 cut(s) | 2099 |
| AcsI | RAATTY | 7 cut(s) | 771, 1214, 1279, 1482, 1737, 1814, 1960 |
| AcuI | CTGAAG | 3 cut(s) | 374, 974, 1157 |
| AdeI | CACNNNGTG | 1 cut(s) | 563 |
| AfaI | GTAC | 3 cut(s) | 629, 720, 2142 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 914, 1324 |
| AflII | CTTAAG | 2 cut(s) | 1442, 1610 |
| AflIII | ACRYGT | 1 cut(s) | 77 |
| AjnI | CCWGG | 1 cut(s) | 1914 |
| AleI | CACNNNNGTG | 1 cut(s) | 82 |
| Alw21I | GWGCWC | 4 cut(s) | 577, 585, 943, 2328 |
| Alw26I | GTCTC | 1 cut(s) | 1454 |
| AlwI | GGATC | 2 cut(s) | 326, 1563 |
| Ama87I | CYCGRG | 1 cut(s) | 202 |
| AoxI | GGCC | 2 cut(s) | 1629, 2099 |
| ApeKI | GCWGC | 7 cut(s) | 5, 8, 465, 1458, 1500, 1798, 2298 |
| ApoI | RAATTY | 7 cut(s) | 771, 1214, 1279, 1482, 1737, 1814, 1960 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1476, 1518, 1818 |
| AspLEI | GCGC | 2 cut(s) | 2356, 2513 |
| AspS9I | GGNCC | 2 cut(s) | 268, 1630 |
| AsuHPI | GGTGA | 1 cut(s) | 575 |
| AvaI | CYCGRG | 1 cut(s) | 202 |
| AvaII | GGWCC | 1 cut(s) | 268 |
| BalI | TGGCCA | 1 cut(s) | 2101 |
| BanI | GGYRCC | 2 cut(s) | 310, 2083 |
| BanII | GRGCYC | 4 cut(s) | 552, 585, 943, 2328 |
| BbsI | GAAGAC | 4 cut(s) | 9, 78, 1652, 1862 |
| Bbv12I | GWGCWC | 4 cut(s) | 577, 585, 943, 2328 |
| BbvI | GCAGC | 5 cut(s) | 452, 1470, 1487, 1785, 2285 |
| BccI | CCATC | 8 cut(s) | 701, 794, 1202, 1393, 1562, 1810, 2177, 2402 |
| BceAI | ACGGC | 3 cut(s) | 1086, 2097, 2382 |
| BciT130I | CCWGG | 1 cut(s) | 1916 |
| BciVI | GTATCC | 1 cut(s) | 283 |
| BclI | TGATCA | 1 cut(s) | 1183 |
| BcoDI | GTCTC | 1 cut(s) | 1454 |
| BfaI | CTAG | 6 cut(s) | 510, 527, 570, 806, 1100, 1565 |
| BfmI | CTRYAG | 1 cut(s) | 1074 |
| BfrI | CTTAAG | 2 cut(s) | 1442, 1610 |
| BfuAI | ACCTGC | 1 cut(s) | 2257 |
| BfuI | GTATCC | 1 cut(s) | 283 |
| BglII | AGATCT | 3 cut(s) | 273, 1978, 2281 |
| BisI | GCNGC | 7 cut(s) | 6, 9, 466, 1459, 1501, 1799, 2299 |
| BlsI | GCNGC | 7 cut(s) | 7, 10, 467, 1460, 1502, 1800, 2300 |
| Bme1390I | CCNGG | 1 cut(s) | 1916 |
| Bme18I | GGWCC | 1 cut(s) | 268 |
| BmeT110I | CYCGRG | 1 cut(s) | 202 |
| BmgT120I | GGNCC | 2 cut(s) | 268, 1630 |
| BmiI | GGNNCC | 2 cut(s) | 312, 2085 |
| BmrFI | CCNGG | 1 cut(s) | 1916 |
| BmsI | GCATC | 7 cut(s) | 248, 556, 966, 978, 1631, 1677, 2341 |
| BpiI | GAAGAC | 4 cut(s) | 9, 78, 1652, 1862 |
| BpmI | CTGGAG | 2 cut(s) | 457, 1438 |
| BpuEI | CTTGAG | 5 cut(s) | 599, 1358, 1489, 1742, 1993 |
| BsaAI | YACGTR | 2 cut(s) | 80, 722 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1047 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 914, 1324 |
| Bse1I | ACTGG | 3 cut(s) | 270, 399, 435 |
| Bse3DI | GCAATG | 1 cut(s) | 2068 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1047 |
| BseBI | CCWGG | 1 cut(s) | 1916 |
| BseGI | GGATG | 4 cut(s) | 1381, 1385, 1646, 2072 |
| BseJI | GATNNNNATC | 1 cut(s) | 1047 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 914, 1324 |
| BseMI | GCAATG | 1 cut(s) | 2068 |
| BseMII | CTCAG | 4 cut(s) | 633, 1033, 1128, 1938 |
| BseNI | ACTGG | 3 cut(s) | 270, 399, 435 |
| BseRI | GAGGAG | 2 cut(s) | 638, 1739 |
| BseXI | GCAGC | 5 cut(s) | 452, 1470, 1487, 1785, 2285 |
| BsgI | GTGCAG | 1 cut(s) | 2245 |
| BshFI | GGCC | 2 cut(s) | 1631, 2101 |
| BshNI | GGYRCC | 2 cut(s) | 310, 2083 |
| BsiHKAI | GWGCWC | 4 cut(s) | 577, 585, 943, 2328 |
| BsiHKCI | CYCGRG | 1 cut(s) | 202 |
| BsiSI | CCGG | 1 cut(s) | 462 |
| BslFI | GGGAC | 1 cut(s) | 1585 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 914, 1324 |
| BsmAI | GTCTC | 1 cut(s) | 1454 |
| BsmFI | GGGAC | 1 cut(s) | 1585 |
| BsmI | GAATGC | 1 cut(s) | 1461 |
| BsnI | GGCC | 2 cut(s) | 1631, 2101 |
| BsoBI | CYCGRG | 1 cut(s) | 202 |
| Bsp1286I | GDGCHC | 5 cut(s) | 552, 577, 585, 943, 2328 |
| Bsp143I | GATC | 9 cut(s) | 273, 331, 631, 1048, 1183, 1555, 1699, 1978, 2281 |
| BspACI | CCGC | 2 cut(s) | 908, 1225 |
| BspANI | GGCC | 2 cut(s) | 1631, 2101 |
| BspCNI | CTCAG | 4 cut(s) | 632, 1032, 1127, 1939 |
| BspHI | TCATGA | 1 cut(s) | 1180 |
| BspLI | GGNNCC | 2 cut(s) | 312, 2085 |
| BspMI | ACCTGC | 1 cut(s) | 2257 |
| BspPI | GGATC | 2 cut(s) | 326, 1563 |
| BspQI | GCTCTTC | 1 cut(s) | 144 |
| BspT107I | GGYRCC | 2 cut(s) | 310, 2083 |
| BspTI | CTTAAG | 2 cut(s) | 1442, 1610 |
| BsrBI | CCGCTC | 1 cut(s) | 1225 |
| BsrDI | GCAATG | 1 cut(s) | 2068 |
| BsrI | ACTGG | 3 cut(s) | 270, 399, 435 |
| BssMI | GATC | 9 cut(s) | 273, 331, 631, 1048, 1183, 1555, 1699, 1978, 2281 |
| BssNAI | GTATAC | 1 cut(s) | 1126 |
| Bst1107I | GTATAC | 1 cut(s) | 1126 |
| Bst2UI | CCWGG | 1 cut(s) | 1916 |
| Bst4CI | ACNGT | 1 cut(s) | 2106 |
| Bst6I | CTCTTC | 4 cut(s) | 144, 1482, 1692, 2206 |
| BstAFI | CTTAAG | 2 cut(s) | 1442, 1610 |
| BstBAI | YACGTR | 2 cut(s) | 80, 722 |
| BstC8I | GCNNGC | 2 cut(s) | 1830, 2039 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1322 |
| BstF5I | GGATG | 4 cut(s) | 1381, 1385, 1646, 2072 |
| BstHHI | GCGC | 2 cut(s) | 2356, 2513 |
| BstKTI | GATC | 9 cut(s) | 276, 334, 634, 1051, 1186, 1558, 1702, 1981, 2284 |
| BstMAI | GTCTC | 1 cut(s) | 1454 |
| BstMBI | GATC | 9 cut(s) | 273, 331, 631, 1048, 1183, 1555, 1699, 1978, 2281 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1079 |
| BstNI | CCWGG | 1 cut(s) | 1916 |
| BstNSI | RCATGY | 1 cut(s) | 846 |
| BstSCI | CCNGG | 1 cut(s) | 1914 |
| BstSFI | CTRYAG | 1 cut(s) | 1074 |
| BstV1I | GCAGC | 5 cut(s) | 452, 1470, 1487, 1785, 2285 |
| BstV2I | GAAGAC | 4 cut(s) | 9, 78, 1652, 1862 |
| BstX2I | RGATCY | 5 cut(s) | 273, 331, 1555, 1978, 2281 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 767 |
| BstYI | RGATCY | 5 cut(s) | 273, 331, 1555, 1978, 2281 |
| BstZ17I | GTATAC | 1 cut(s) | 1126 |
| BsuI | GTATCC | 1 cut(s) | 283 |
| BsuRI | GGCC | 2 cut(s) | 1631, 2101 |
| BtsCI | GGATG | 4 cut(s) | 1381, 1385, 1646, 2072 |
| BtsIMutI | CAGTG | 1 cut(s) | 406 |
| BveI | ACCTGC | 1 cut(s) | 2257 |
| Cac8I | GCNNGC | 2 cut(s) | 1830, 2039 |
| CciI | TCATGA | 1 cut(s) | 1180 |
| CfoI | GCGC | 2 cut(s) | 2356, 2513 |
| Cfr13I | GGNCC | 2 cut(s) | 268, 1630 |
| Csp6I | GTAC | 3 cut(s) | 628, 719, 2141 |
| CviQI | GTAC | 3 cut(s) | 628, 719, 2141 |
| DpnI | GATC | 9 cut(s) | 275, 333, 633, 1050, 1185, 1557, 1701, 1980, 2283 |
| DpnII | GATC | 9 cut(s) | 273, 331, 631, 1048, 1183, 1555, 1699, 1978, 2281 |
| DraI | TTTAAA | 1 cut(s) | 1965 |
| DraIII | CACNNNGTG | 1 cut(s) | 563 |
| EaeI | YGGCCR | 1 cut(s) | 2099 |
| Eam1104I | CTCTTC | 4 cut(s) | 144, 1482, 1692, 2206 |
| EarI | CTCTTC | 4 cut(s) | 144, 1482, 1692, 2206 |
| Ecl136II | GAGCTC | 3 cut(s) | 583, 941, 2326 |
| Eco24I | GRGCYC | 4 cut(s) | 552, 585, 943, 2328 |
| Eco47I | GGWCC | 1 cut(s) | 268 |
| Eco53kI | GAGCTC | 3 cut(s) | 583, 941, 2326 |
| Eco57I | CTGAAG | 3 cut(s) | 374, 974, 1157 |
| Eco88I | CYCGRG | 1 cut(s) | 202 |
| EcoICRI | GAGCTC | 3 cut(s) | 583, 941, 2326 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1322 |
| EcoRI | GAATTC | 1 cut(s) | 771 |
| EcoRII | CCWGG | 1 cut(s) | 1914 |
| EcoT22I | ATGCAT | 4 cut(s) | 241, 981, 1277, 1646 |
| EcoT38I | GRGCYC | 4 cut(s) | 552, 585, 943, 2328 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 812, 844 |
| FaqI | GGGAC | 1 cut(s) | 1585 |
| FauNDI | CATATG | 2 cut(s) | 1467, 1749 |
| FbaI | TGATCA | 1 cut(s) | 1183 |
| FblI | GTMKAC | 1 cut(s) | 1125 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 9, 466, 1459, 1501, 1799, 2299 |
| FokI | GGATG | 4 cut(s) | 1368, 1372, 1653, 2079 |
| FriOI | GRGCYC | 4 cut(s) | 552, 585, 943, 2328 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 9, 466, 1459, 1501, 1799, 2299 |
| FspAI | RTGCGCAY | 1 cut(s) | 2355 |
| FspBI | CTAG | 6 cut(s) | 510, 527, 570, 806, 1100, 1565 |
| FspI | TGCGCA | 1 cut(s) | 2355 |
| GlaI | GCGC | 2 cut(s) | 2355, 2512 |
| GluI | GCNGC | 7 cut(s) | 6, 9, 466, 1459, 1501, 1799, 2299 |
| GsuI | CTGGAG | 2 cut(s) | 457, 1438 |
| HaeIII | GGCC | 2 cut(s) | 1631, 2101 |
| HapII | CCGG | 1 cut(s) | 462 |
| HhaI | GCGC | 2 cut(s) | 2356, 2513 |
| Hin6I | GCGC | 2 cut(s) | 2354, 2511 |
| HinP1I | GCGC | 2 cut(s) | 2354, 2511 |
| HincII | GTYRAC | 3 cut(s) | 409, 1059, 2277 |
| HindII | GTYRAC | 3 cut(s) | 409, 1059, 2277 |
| HindIII | AAGCTT | 3 cut(s) | 372, 793, 2393 |
| HpaI | GTTAAC | 2 cut(s) | 1059, 2277 |
| HpaII | CCGG | 1 cut(s) | 462 |
| HphI | GGTGA | 1 cut(s) | 575 |
| Hpy166II | GTNNAC | 6 cut(s) | 409, 719, 917, 1059, 1126, 2277 |
| Hpy8I | GTNNAC | 6 cut(s) | 409, 719, 917, 1059, 1126, 2277 |
| Hpy99I | CGWCG | 3 cut(s) | 50, 170, 2110 |
| HpyAV | CCTTC | 9 cut(s) | 23, 345, 349, 914, 1082, 1537, 1747, 1985, 2288 |
| HpyCH4III | ACNGT | 1 cut(s) | 2106 |
| HpyCH4IV | ACGT | 4 cut(s) | 48, 79, 721, 1266 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1079 |
| HpySE526I | ACGT | 4 cut(s) | 48, 79, 721, 1266 |
| HspAI | GCGC | 2 cut(s) | 2354, 2511 |
| Ksp22I | TGATCA | 1 cut(s) | 1183 |
| KspAI | GTTAAC | 2 cut(s) | 1059, 2277 |
| Kzo9I | GATC | 9 cut(s) | 273, 331, 631, 1048, 1183, 1555, 1699, 1978, 2281 |
| LguI | GCTCTTC | 1 cut(s) | 144 |
| LmnI | GCTCC | 4 cut(s) | 178, 695, 1546, 1756 |
| Lsp1109I | GCAGC | 5 cut(s) | 452, 1470, 1487, 1785, 2285 |
| LweI | GCATC | 7 cut(s) | 248, 556, 966, 978, 1631, 1677, 2341 |
| MaeI | CTAG | 6 cut(s) | 510, 527, 570, 806, 1100, 1565 |
| MaeII | ACGT | 4 cut(s) | 48, 79, 721, 1266 |
| MaeIII | GTNAC | 3 cut(s) | 555, 1286, 2156 |
| MalI | GATC | 9 cut(s) | 275, 333, 633, 1050, 1185, 1557, 1701, 1980, 2283 |
| MbiI | CCGCTC | 1 cut(s) | 1225 |
| MboI | GATC | 9 cut(s) | 273, 331, 631, 1048, 1183, 1555, 1699, 1978, 2281 |
| MfeI | CAATTG | 1 cut(s) | 1083 |
| MflI | RGATCY | 5 cut(s) | 273, 331, 1555, 1978, 2281 |
| MhlI | GDGCHC | 5 cut(s) | 552, 577, 585, 943, 2328 |
| MlsI | TGGCCA | 1 cut(s) | 2101 |
| MluNI | TGGCCA | 1 cut(s) | 2101 |
| MlyI | GAGTC | 5 cut(s) | 194, 464, 1229, 1456, 1686 |
| MmeI | TCCRAC | 2 cut(s) | 1134, 2151 |
| Mox20I | TGGCCA | 1 cut(s) | 2101 |
| Mph1103I | ATGCAT | 4 cut(s) | 241, 981, 1277, 1646 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1476, 1518, 1818 |
| MscI | TGGCCA | 1 cut(s) | 2101 |
| MslI | CAYNNNNRTG | 6 cut(s) | 82, 974, 1466, 1676, 2056, 2406 |
| Msp20I | TGGCCA | 1 cut(s) | 2101 |
| MspA1I | CMGCKG | 1 cut(s) | 1417 |
| MspCI | CTTAAG | 2 cut(s) | 1442, 1610 |
| MspI | CCGG | 1 cut(s) | 462 |
| MspR9I | CCNGG | 1 cut(s) | 1916 |
| MunI | CAATTG | 1 cut(s) | 1083 |
| Mva1269I | GAATGC | 1 cut(s) | 1461 |
| MvaI | CCWGG | 1 cut(s) | 1916 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1079 |
| NdeI | CATATG | 2 cut(s) | 1467, 1749 |
| NdeII | GATC | 9 cut(s) | 273, 331, 631, 1048, 1183, 1555, 1699, 1978, 2281 |
| NlaIV | GGNNCC | 2 cut(s) | 312, 2085 |
| NmuCI | GTSAC | 3 cut(s) | 555, 1286, 2156 |
| NsbI | TGCGCA | 1 cut(s) | 2355 |
| NsiI | ATGCAT | 4 cut(s) | 241, 981, 1277, 1646 |
| NspI | RCATGY | 1 cut(s) | 846 |
| OliI | CACNNNNGTG | 1 cut(s) | 82 |
| PaeR7I | CTCGAG | 1 cut(s) | 202 |
| PagI | TCATGA | 1 cut(s) | 1180 |
| PciSI | GCTCTTC | 1 cut(s) | 144 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 209 |
| PctI | GAATGC | 1 cut(s) | 1461 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1476, 1518, 1818 |
| PfeI | GAWTC | 9 cut(s) | 143, 395, 495, 812, 1177, 1348, 1420, 1472, 2543 |
| PkrI | GCNGC | 7 cut(s) | 7, 10, 467, 1460, 1502, 1800, 2300 |
| PleI | GAGTC | 5 cut(s) | 194, 464, 1229, 1455, 1686 |
| PpsI | GAGTC | 5 cut(s) | 194, 464, 1229, 1455, 1686 |
| Ppu21I | YACGTR | 2 cut(s) | 80, 722 |
| Psp124BI | GAGCTC | 3 cut(s) | 585, 943, 2328 |
| Psp6I | CCWGG | 1 cut(s) | 1914 |
| PspGI | CCWGG | 1 cut(s) | 1914 |
| PspN4I | GGNNCC | 2 cut(s) | 312, 2085 |
| PspPI | GGNCC | 2 cut(s) | 268, 1630 |
| PspXI | VCTCGAGB | 1 cut(s) | 202 |
| PsuI | RGATCY | 5 cut(s) | 273, 331, 1555, 1978, 2281 |
| PvuII | CAGCTG | 1 cut(s) | 1417 |
| RsaI | GTAC | 3 cut(s) | 629, 720, 2142 |
| RsaNI | GTAC | 3 cut(s) | 628, 719, 2141 |
| RseI | CAYNNNNRTG | 6 cut(s) | 82, 974, 1466, 1676, 2056, 2406 |
| SacI | GAGCTC | 3 cut(s) | 585, 943, 2328 |
| SapI | GCTCTTC | 1 cut(s) | 144 |
| SatI | GCNGC | 7 cut(s) | 6, 9, 466, 1459, 1501, 1799, 2299 |
| Sau3AI | GATC | 9 cut(s) | 273, 331, 631, 1048, 1183, 1555, 1699, 1978, 2281 |
| Sau96I | GGNCC | 2 cut(s) | 268, 1630 |
| SchI | GAGTC | 5 cut(s) | 194, 464, 1229, 1456, 1686 |
| ScrFI | CCNGG | 1 cut(s) | 1916 |
| SduI | GDGCHC | 5 cut(s) | 552, 577, 585, 943, 2328 |
| SfaNI | GCATC | 7 cut(s) | 248, 556, 966, 978, 1631, 1677, 2341 |
| SfcI | CTRYAG | 1 cut(s) | 1074 |
| Sfr274I | CTCGAG | 1 cut(s) | 202 |
| SinI | GGWCC | 1 cut(s) | 268 |
| SlaI | CTCGAG | 1 cut(s) | 202 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 82, 974, 1466, 1676, 2056, 2406 |
| SmlI | CTYRAG | 8 cut(s) | 202, 578, 1337, 1442, 1504, 1610, 1721, 1972 |
| SmoI | CTYRAG | 8 cut(s) | 202, 578, 1337, 1442, 1504, 1610, 1721, 1972 |
| SsiI | CCGC | 2 cut(s) | 908, 1225 |
| SspMI | CTAG | 6 cut(s) | 510, 527, 570, 806, 1100, 1565 |
| SstI | GAGCTC | 3 cut(s) | 585, 943, 2328 |
| StyD4I | CCNGG | 1 cut(s) | 1914 |
| TaaI | ACNGT | 1 cut(s) | 2106 |
| TaiI | ACGT | 4 cut(s) | 51, 82, 724, 1269 |
| TfiI | GAWTC | 9 cut(s) | 143, 395, 495, 812, 1177, 1348, 1420, 1472, 2543 |
| TscAI | CASTG | 1 cut(s) | 406 |
| TseFI | GTSAC | 3 cut(s) | 555, 1286, 2156 |
| TseI | GCWGC | 7 cut(s) | 5, 8, 465, 1458, 1500, 1798, 2298 |
| Tsp45I | GTSAC | 3 cut(s) | 555, 1286, 2156 |
| TspGWI | ACGGA | 1 cut(s) | 2516 |
| TspRI | CASTG | 1 cut(s) | 406 |
| Vha464I | CTTAAG | 2 cut(s) | 1442, 1610 |
| VpaK11BI | GGWCC | 1 cut(s) | 268 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1322 |
| XapI | RAATTY | 7 cut(s) | 771, 1214, 1279, 1482, 1737, 1814, 1960 |
| XceI | RCATGY | 1 cut(s) | 846 |
| XhoI | CTCGAG | 1 cut(s) | 202 |
| XmiI | GTMKAC | 1 cut(s) | 1125 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1476, 1518, 1818 |
| XspI | CTAG | 6 cut(s) | 510, 527, 570, 806, 1100, 1565 |
| Zsp2I | ATGCAT | 4 cut(s) | 241, 981, 1277, 1646 |