Rroxscaffold_4G00305960

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000067
Physical Location & Seq
Forward (+)
26730772 .. 26738091
7320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00305960.1

Sequence Viewer

Length: 2529 bp
ATGGCTGGTGCTTCTTCATCCTCTGGAGGCAGTCGGAAATACGACGTTTTCATCAATTTCAGGGGCGAAGACACACGTAGGTGTTTCGTCTGCCATCTGTACGAAGCTCTGAAACAGAAAGCACTCGACACCTTCATTGATTCCGAAGAGCTTAGAAAAGGCGACGACCTTTCGGAGCTATTCAAAGCCATTCAAGGCTCGACGCTTTCGATTGTAGTTTTCTCTAAAAACTACGCATCTTCTAAATGGTGCTTAAAAGAACTGGTCCAGATCTTGGAGTGTATGGATAGGCAGAGCCAGATTGTGGTGCCCATTTTCTATGAAGTAGATCCCTCCCATATTCGCAACCTTGAGGAAAGTTTTGCAGAAGCTTTTGCAAAACATGAAAGTAATTCCAAAATCGACAAAGAAGAGTTGGAGAGCTGGAAGTCCAGTTTAACCAGAGCCACCAGTTTATCTGGCTGGGATTCCAAATCCAAAGATTATCGGGATGATACCCAGCTTATCGGCAGCATTGTAGAAGACATTTTAAAGAAATTGATCCACAGCTCACCAAGTAAAACCGATGGCTTGATTGGAATGGATTCTCACATGGATAAAATTGATTCGCTATTACAGTTGGGGGTGGATGATTTTCGCATTGTTGGAATCTGGGGTATGGGTGGCATCGGCAAGTCAACCATAGCTAGAGCTGTTTTTGATAAAATTGCTCATCAATATGAACACAACTGCTTTCTTGAGAATGTGAAGGAGGGCTTCATCACAAAAAATGGTGCAGTACAAATGGTTGAAAAACTTCTATCCAAAATTCTGAAGGCTACGAACGTTGAAGGCATAATCCTAGACTTGTCAAAGTCAAAAGAGGTATACGTAAATGATGAAGTTTTTGTTAGCATGAGGAGACTAAGGCTACTCCAGCTTTTTGAATATTATTATGGAGACAAATATAGTCAGTATGGAAGTGTATGGCAAAAAGCAGATTTTGAACCCTGTGTACAATACATGAGGGAGAACTTAAAGTTTCTTTCAAATGAGTTGAGAGTTCTTGTGTGGCATGGATGCCCACTAAAGTCTTTCCCAATTAATTTTCAACCGAAGAATCTTATTTATGTCGACATGTGCTATAGTCGTATTGAACAATTTTGGGAAGGAACCAAGGGTCTCAATCTGACTGGGTGCTCTAACCTTTCAAAGTTGCCTGAGTACTTAGGGAATTTGAAATCCTTGTGGCAATTTGAAGTGGGGAGAAGTGGTATAAAACAACTTACATTCTCTATCTGGCGTTTAGGGGATTCATTATCATGTAATGGATGTAAAGAGATGACATGGAACCCCCAAAATCAGAGGAACTCTTTTCTGGAGAGTCTTGATTTAAGTGACTGCAATCTCTTGGAATTATCATACGGCATTGCTCATTTATTATCAGATGGCATTGCTCATTTATCATTGTATGAATTAAACTTATCCGGAAACAACAAGTTGGAAAGTTTACCTGCAGCAATGATTCGCCTGGGTCATTTAAGACGGCTCTATCTGAGAGGTTGCAAGAGACTGAAATCAATACCAGAGCTTTCATCGAGTATACAAGAAATCGATGCCCAAGATTGCACATCTTTGGAGACAGTTTCAACACCACAGCCTCCGTACGCTGAGGACATTCGCTTCCGATTTGTTAATTGCTTCAAGTTGGTGACCAATACCAATCTATTTATAGATATTGTGGAAACTGCTACTGATATTCAGGCTATTTATGATCGTTATATTGGACCTCCTTACCATGTATCTCTTCCTGGAAGTGATATTCCAGAATGGTTCAACCATCAGAGTAGAGGGTCTTCCGTAACTGTGCAATTACCACCCAACTGGCTCGCAAACAAGTTTCTAGGGTTCGCTATATGCGCCATCGGTAACTTGCGGGGTGCTGCAAATACAAAAACTCAATCTGCTGTATGTTGTTGTACCTTAGAAGCAAATGATGGTCAGGACAATTTCTATTTTTCTTTGTTCGATATTCTAGATGGAACTGGCATGCCTCTTGAATCAGATCATATGTTGCTGGGATATACAAATTTACGAAGTTTAGGAGAGAGGCATAATGAACGCAAATACACCGAGGCCAGATTTAGGATAGTGGCAAGCACCTATGGAGTCATCCCAAATGATTCAATGACATTAGAAGATTGCACTTGGATCACAAGTTGCGGGGTTCGGTTATTCCACATAAATCCACCCTCGGTGGATCTTATTTGTAATTTGGAAAATAGAGAAACAGAGATAAGGAGTAAGAGAAAGAGAGAAACACTAGAGAGAGGGAAAGAGAAGATGGGGGTGGAGGTGCAGGAAGAGGGGGAGGAGTGCTCAGGAGGGCCCATATGCTGCTGCTTCTCGTTGAGTGGGTGTACAATATCGTTGAGAAAGCGACAAAAAGAAAAAGAAAGAGAGGGAGAGGGTGTTGCTGGAGACACAGGATTAGAGTCAGAGGACGCGGATGTCTCAGGGGAAGGGGGACTCCTCACATTGTCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

842

Amino Acids

95.01

Weight (kDa)

5.5

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 13 - 190 3.7e-49 TIR domain
TIR_2 PF13676 16 - 111 9.2e-15 TIR domain
NB-ARC PF00931 196 - 251 8.4e-07 NB-ARC domain
C-JID PF20160 596 - 742 2.1e-21 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2489
Acc36I ACCTGC 1 cut(s) 1501
AccB1I GGYRCC 1 cut(s) 307
AccB7I CCANNNNNTGG 2 cut(s) 274, 304
AccI GTMKAC 3 cut(s) 867, 1113, 1582
AccII CGCG 1 cut(s) 2486
AccIII TCCGGA 1 cut(s) 1466
AciI CCGC 3 cut(s) 1915, 2202, 2486
AclI AACGTT 1 cut(s) 825
AclWI GGATC 4 cut(s) 323, 535, 2198, 2247
AcsI RAATTY 3 cut(s) 807, 1213, 2068
AcuI CTGAAG 1 cut(s) 833
AfaI GTAC 7 cut(s) 101, 780, 996, 1205, 1646, 1960, 2401
AfiI CCNNNNNNNGG 3 cut(s) 274, 304, 2124
AflIII ACRYGT 2 cut(s) 74, 1116
AjnI CCWGG 2 cut(s) 1509, 1789
AleI CACNNNNGTG 1 cut(s) 79
Alw21I GWGCWC 2 cut(s) 1181, 2360
Alw26I GTCTC 7 cut(s) 895, 933, 1166, 1543, 1613, 2454, 2497
AlwI GGATC 4 cut(s) 323, 535, 2198, 2247
Aor13HI TCCGGA 1 cut(s) 1466
AoxI GGCC 2 cut(s) 2115, 2366
ApaI GGGCCC 1 cut(s) 2370
ApeKI GCWGC 5 cut(s) 510, 1496, 1922, 2376, 2379
ApoI RAATTY 3 cut(s) 807, 1213, 2068
AseI ATTAAT 1 cut(s) 1083
Asp700I GAANNNNTTC 2 cut(s) 583, 795
AspLEI GCGC 1 cut(s) 1901
AspS9I GGNCC 4 cut(s) 265, 1766, 2366, 2367
AsuHPI GGTGA 2 cut(s) 543, 1702
AvaII GGWCC 2 cut(s) 265, 1766
BaeGI GKGCMC 2 cut(s) 312, 2370
BanI GGYRCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 2370
BarI GAAGNNNNNNTAC 2 cut(s) 1819, 1851
BbsI GAAGAC 3 cut(s) 75, 528, 1827
Bbv12I GWGCWC 2 cut(s) 1181, 2360
BbvCI CCTCAGC 1 cut(s) 1650
BbvI GCAGC 5 cut(s) 522, 1508, 1909, 2363, 2366
BccI CCATC 8 cut(s) 102, 560, 1421, 1827, 1910, 1970, 2012, 2317
BceAI ACGGC 2 cut(s) 1420, 1541
BciT130I CCWGG 2 cut(s) 1511, 1791
BcoDI GTCTC 7 cut(s) 895, 933, 1166, 1543, 1613, 2454, 2497
BfaI CTAG 6 cut(s) 687, 842, 1883, 2015, 2303, 2527
BfmI CTRYAG 2 cut(s) 1123, 1494
BfuAI ACCTGC 1 cut(s) 1501
BglII AGATCT 1 cut(s) 270
BisI GCNGC 5 cut(s) 511, 1497, 1923, 2377, 2380
BlsI GCNGC 5 cut(s) 512, 1498, 1924, 2378, 2381
BmcAI AGTACT 1 cut(s) 1205
Bme1390I CCNGG 2 cut(s) 1511, 1791
Bme18I GGWCC 2 cut(s) 265, 1766
BmgT120I GGNCC 4 cut(s) 265, 1766, 2366, 2367
BmiI GGNNCC 4 cut(s) 309, 1153, 1331, 2368
BmrFI CCNGG 2 cut(s) 1511, 1791
BmrI ACTGGG 1 cut(s) 1182
BmsI GCATC 4 cut(s) 245, 675, 1049, 1585
BmuI ACTGGG 1 cut(s) 1182
BpiI GAAGAC 3 cut(s) 75, 528, 1827
BplI GAGNNNNNCTC 2 cut(s) 2342, 2374
BpmI CTGGAG 4 cut(s) 45, 899, 1379, 2478
Bpu10I CCTNAGC 2 cut(s) 1650, 2359
BpuEI CTTGAG 2 cut(s) 371, 758
Bsa29I ATCGAT 1 cut(s) 1593
BsaAI YACGTR 2 cut(s) 77, 871
BsaI GGTCTC 1 cut(s) 1166
BsaJI CCNNGG 4 cut(s) 1155, 1510, 2112, 2232
BsaWI WCCGGW 1 cut(s) 1466
BsaXI ACNNNNNCTCC 4 cut(s) 1237, 1267, 2436, 2466
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 304, 2124
Bse1I ACTGG 6 cut(s) 267, 432, 450, 1177, 1868, 2029
Bse3DI GCAATG 3 cut(s) 1407, 1431, 1506
BseAI TCCGGA 1 cut(s) 1466
BseBI CCWGG 2 cut(s) 1511, 1791
BseCI ATCGAT 1 cut(s) 1593
BseDI CCNNGG 4 cut(s) 1155, 1510, 2112, 2232
BseGI GGATG 7 cut(s) 17, 496, 634, 1064, 1316, 2151, 2494
BseLI CCNNNNNNNGG 3 cut(s) 274, 304, 2124
BseMI GCAATG 3 cut(s) 1407, 1431, 1506
BseMII CTCAG 5 cut(s) 1191, 1526, 1641, 2373, 2508
BseNI ACTGG 6 cut(s) 267, 432, 450, 1177, 1868, 2029
BseRI GAGGAG 3 cut(s) 913, 2366, 2501
BseSI GKGCMC 2 cut(s) 312, 2370
BseXI GCAGC 5 cut(s) 522, 1508, 1909, 2363, 2366
BseYI CCCAGC 3 cut(s) 462, 498, 2056
BsgI GTGCAG 2 cut(s) 795, 2357
Bsh1236I CGCG 1 cut(s) 2486
BshFI GGCC 2 cut(s) 2117, 2368
BshNI GGYRCC 1 cut(s) 307
BshVI ATCGAT 1 cut(s) 1593
BsiHKAI GWGCWC 2 cut(s) 1181, 2360
BsiSI CCGG 1 cut(s) 1467
BsiWI CGTACG 1 cut(s) 1644
BslFI GGGAC 1 cut(s) 2520
BslI CCNNNNNNNGG 3 cut(s) 274, 304, 2124
BsmAI GTCTC 7 cut(s) 895, 933, 1166, 1543, 1613, 2454, 2497
BsmFI GGGAC 1 cut(s) 2520
BsnI GGCC 2 cut(s) 2117, 2368
Bso31I GGTCTC 1 cut(s) 1166
Bsp120I GGGCCC 1 cut(s) 2366
Bsp1286I GDGCHC 4 cut(s) 312, 1181, 2360, 2370
Bsp13I TCCGGA 1 cut(s) 1466
Bsp1407I TGTACA 2 cut(s) 994, 2399
Bsp143I GATC 7 cut(s) 270, 328, 540, 1753, 2044, 2190, 2239
BspACI CCGC 3 cut(s) 1915, 2202, 2486
BspANI GGCC 2 cut(s) 2117, 2368
BspCNI CTCAG 5 cut(s) 1192, 1527, 1642, 2372, 2507
BspDI ATCGAT 1 cut(s) 1593
BspEI TCCGGA 1 cut(s) 1466
BspFNI CGCG 1 cut(s) 2486
BspLI GGNNCC 4 cut(s) 309, 1153, 1331, 2368
BspMAI CTGCAG 1 cut(s) 1498
BspMI ACCTGC 1 cut(s) 1501
BspPI GGATC 4 cut(s) 323, 535, 2198, 2247
BspQI GCTCTTC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 1166
BsrDI GCAATG 3 cut(s) 1407, 1431, 1506
BsrGI TGTACA 2 cut(s) 994, 2399
BsrI ACTGG 6 cut(s) 267, 432, 450, 1177, 1868, 2029
BssECI CCNNGG 4 cut(s) 1155, 1510, 2112, 2232
BssMI GATC 7 cut(s) 270, 328, 540, 1753, 2044, 2190, 2239
BssNAI GTATAC 2 cut(s) 868, 1583
BssT1I CCWWGG 1 cut(s) 1155
Bst1107I GTATAC 2 cut(s) 868, 1583
Bst2UI CCWGG 2 cut(s) 1511, 1791
Bst4CI ACNGT 3 cut(s) 618, 1624, 1846
Bst6I CTCTTC 4 cut(s) 141, 405, 1791, 2337
BstAUI TGTACA 2 cut(s) 994, 2399
BstBAI YACGTR 2 cut(s) 77, 871
BstC8I GCNNGC 3 cut(s) 1869, 2030, 2137
BstDEI CTNAG 9 cut(s) 152, 905, 1200, 1207, 1535, 1650, 1963, 2359, 2494
BstEII GGTNACC 1 cut(s) 1690
BstF5I GGATG 7 cut(s) 17, 496, 634, 1064, 1316, 2151, 2494
BstFNI CGCG 1 cut(s) 2486
BstHHI GCGC 1 cut(s) 1901
BstKTI GATC 7 cut(s) 273, 331, 543, 1756, 2047, 2193, 2242
BstMAI GTCTC 7 cut(s) 895, 933, 1166, 1543, 1613, 2454, 2497
BstMBI GATC 7 cut(s) 270, 328, 540, 1753, 2044, 2190, 2239
BstMWI GCNNNNNNNGC 2 cut(s) 916, 1898
BstNI CCWGG 2 cut(s) 1511, 1791
BstNSI RCATGY 2 cut(s) 1120, 2032
BstPI GGTNACC 1 cut(s) 1690
BstSCI CCNGG 2 cut(s) 1509, 1789
BstSFI CTRYAG 2 cut(s) 1123, 1494
BstSLI GKGCMC 2 cut(s) 312, 2370
BstSNI TACGTA 1 cut(s) 871
BstUI CGCG 1 cut(s) 2486
BstV1I GCAGC 5 cut(s) 522, 1508, 1909, 2363, 2366
BstV2I GAAGAC 3 cut(s) 75, 528, 1827
BstX2I RGATCY 3 cut(s) 270, 328, 2239
BstXI CCANNNNNNTGG 1 cut(s) 1863
BstYI RGATCY 3 cut(s) 270, 328, 2239
BstZ17I GTATAC 2 cut(s) 868, 1583
Bsu15I ATCGAT 1 cut(s) 1593
BsuRI GGCC 2 cut(s) 2117, 2368
BsuTUI ATCGAT 1 cut(s) 1593
BtsCI GGATG 7 cut(s) 17, 496, 634, 1064, 1316, 2151, 2494
BveI ACCTGC 1 cut(s) 1501
Cac8I GCNNGC 3 cut(s) 1869, 2030, 2137
CfoI GCGC 1 cut(s) 1901
Cfr13I GGNCC 4 cut(s) 265, 1766, 2366, 2367
ClaI ATCGAT 1 cut(s) 1593
CseI GACGC 2 cut(s) 211, 2492
Csp6I GTAC 7 cut(s) 100, 779, 995, 1204, 1645, 1959, 2400
CviQI GTAC 7 cut(s) 100, 779, 995, 1204, 1645, 1959, 2400
DdeI CTNAG 9 cut(s) 152, 905, 1200, 1207, 1535, 1650, 1963, 2359, 2494
DpnI GATC 7 cut(s) 272, 330, 542, 1755, 2046, 2192, 2241
DpnII GATC 7 cut(s) 270, 328, 540, 1753, 2044, 2190, 2239
DraI TTTAAA 1 cut(s) 531
DrdI GACNNNNNNGTC 1 cut(s) 2489
DseDI GACNNNNNNGTC 1 cut(s) 2489
Eam1104I CTCTTC 4 cut(s) 141, 405, 1791, 2337
EarI CTCTTC 4 cut(s) 141, 405, 1791, 2337
Eco105I TACGTA 1 cut(s) 871
Eco130I CCWWGG 1 cut(s) 1155
Eco24I GRGCYC 1 cut(s) 2370
Eco31I GGTCTC 1 cut(s) 1166
Eco47I GGWCC 2 cut(s) 265, 1766
Eco57I CTGAAG 1 cut(s) 833
Eco91I GGTNACC 1 cut(s) 1690
EcoO109I RGGNCCY 1 cut(s) 2366
EcoO65I GGTNACC 1 cut(s) 1690
EcoRII CCWGG 2 cut(s) 1509, 1789
EcoT14I CCWWGG 1 cut(s) 1155
EcoT38I GRGCYC 1 cut(s) 2370
ErhI CCWWGG 1 cut(s) 1155
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 1 cut(s) 2520
FauI CCCGC 2 cut(s) 1908, 2195
FauNDI CATATG 2 cut(s) 2049, 2372
FblI GTMKAC 3 cut(s) 867, 1113, 1582
Fnu4HI GCNGC 5 cut(s) 511, 1497, 1923, 2377, 2380
FokI GGATG 7 cut(s) 4, 503, 641, 1071, 1323, 2138, 2501
FriOI GRGCYC 1 cut(s) 2370
Fsp4HI GCNGC 5 cut(s) 511, 1497, 1923, 2377, 2380
FspBI CTAG 6 cut(s) 687, 842, 1883, 2015, 2303, 2527
GlaI GCGC 1 cut(s) 1900
GluI GCNGC 5 cut(s) 511, 1497, 1923, 2377, 2380
GsaI CCCAGC 3 cut(s) 466, 502, 2060
GsuI CTGGAG 4 cut(s) 45, 899, 1379, 2478
HaeIII GGCC 2 cut(s) 2117, 2368
HapII CCGG 1 cut(s) 1467
HgaI GACGC 2 cut(s) 211, 2492
HhaI GCGC 1 cut(s) 1901
Hin6I GCGC 1 cut(s) 1899
HinP1I GCGC 1 cut(s) 1899
HincII GTYRAC 2 cut(s) 678, 1114
HindII GTYRAC 2 cut(s) 678, 1114
HindIII AAGCTT 1 cut(s) 369
HpaII CCGG 1 cut(s) 1467
HphI GGTGA 2 cut(s) 543, 1702
Hpy166II GTNNAC 7 cut(s) 678, 868, 995, 1114, 1490, 1583, 2400
Hpy8I GTNNAC 7 cut(s) 678, 868, 995, 1114, 1490, 1583, 2400
Hpy99I CGWCG 3 cut(s) 47, 167, 205
HpyAV CCTTC 6 cut(s) 142, 742, 808, 824, 1142, 2495
HpyCH4III ACNGT 3 cut(s) 618, 1624, 1846
HpyCH4IV ACGT 4 cut(s) 45, 76, 825, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 916, 1898
HpyF3I CTNAG 9 cut(s) 152, 905, 1200, 1207, 1535, 1650, 1963, 2359, 2494
HpySE526I ACGT 4 cut(s) 45, 76, 825, 870
HspAI GCGC 1 cut(s) 1899
Kpn2I TCCGGA 1 cut(s) 1466
Kzo9I GATC 7 cut(s) 270, 328, 540, 1753, 2044, 2190, 2239
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 5 cut(s) 522, 1508, 1909, 2363, 2366
LweI GCATC 4 cut(s) 245, 675, 1049, 1585
MaeI CTAG 6 cut(s) 687, 842, 1883, 2015, 2303, 2527
MaeII ACGT 4 cut(s) 45, 76, 825, 870
MaeIII GTNAC 4 cut(s) 1376, 1690, 1840, 1907
MalI GATC 7 cut(s) 272, 330, 542, 1755, 2046, 2192, 2241
MboI GATC 7 cut(s) 270, 328, 540, 1753, 2044, 2190, 2239
MflI RGATCY 3 cut(s) 270, 328, 2239
MhlI GDGCHC 4 cut(s) 312, 1181, 2360, 2370
MlyI GAGTC 4 cut(s) 1372, 2157, 2483, 2502
MmeI TCCRAC 4 cut(s) 14, 396, 625, 1461
MroI TCCGGA 1 cut(s) 1466
MroXI GAANNNNTTC 2 cut(s) 583, 795
MseI TTAA 9 cut(s) 254, 437, 530, 1016, 1083, 1373, 1457, 1520, 1674
MslI CAYNNNNRTG 3 cut(s) 79, 717, 1300
MspI CCGG 1 cut(s) 1467
MspR9I CCNGG 2 cut(s) 1511, 1791
MvaI CCWGG 2 cut(s) 1511, 1791
MvnI CGCG 1 cut(s) 2486
MwoI GCNNNNNNNGC 2 cut(s) 916, 1898
NdeI CATATG 2 cut(s) 2049, 2372
NdeII GATC 7 cut(s) 270, 328, 540, 1753, 2044, 2190, 2239
NlaIV GGNNCC 4 cut(s) 309, 1153, 1331, 2368
NmuCI GTSAC 2 cut(s) 1376, 1690
NspI RCATGY 2 cut(s) 1120, 2032
OliI CACNNNNGTG 1 cut(s) 79
PaeI GCATGC 1 cut(s) 2032
PciI ACATGT 1 cut(s) 1116
PciSI GCTCTTC 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PdmI GAANNNNTTC 2 cut(s) 583, 795
Pfl23II CGTACG 1 cut(s) 1644
PflMI CCANNNNNTGG 2 cut(s) 274, 304
PfoI TCCNGGA 1 cut(s) 1789
PkrI GCNGC 5 cut(s) 512, 1498, 1924, 2378, 2381
PleI GAGTC 4 cut(s) 1371, 2156, 2482, 2502
PpsI GAGTC 4 cut(s) 1371, 2156, 2482, 2502
Ppu21I YACGTR 2 cut(s) 77, 871
PscI ACATGT 1 cut(s) 1116
PshBI ATTAAT 1 cut(s) 1083
Psp1406I AACGTT 1 cut(s) 825
Psp6I CCWGG 2 cut(s) 1509, 1789
PspEI GGTNACC 1 cut(s) 1690
PspFI CCCAGC 3 cut(s) 462, 498, 2056
PspGI CCWGG 2 cut(s) 1509, 1789
PspLI CGTACG 1 cut(s) 1644
PspN4I GGNNCC 4 cut(s) 309, 1153, 1331, 2368
PspOMI GGGCCC 1 cut(s) 2366
PspPI GGNCC 4 cut(s) 265, 1766, 2366, 2367
PsrI GAACNNNNNNTAC 2 cut(s) 978, 1010
PstI CTGCAG 1 cut(s) 1498
PsuI RGATCY 3 cut(s) 270, 328, 2239
RsaI GTAC 7 cut(s) 101, 780, 996, 1205, 1646, 1960, 2401
RsaNI GTAC 7 cut(s) 100, 779, 995, 1204, 1645, 1959, 2400
RseI CAYNNNNRTG 3 cut(s) 79, 717, 1300
SalI GTCGAC 1 cut(s) 1112
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 9 cut(s) 254, 437, 530, 1016, 1083, 1373, 1457, 1520, 1674
SatI GCNGC 5 cut(s) 511, 1497, 1923, 2377, 2380
Sau3AI GATC 7 cut(s) 270, 328, 540, 1753, 2044, 2190, 2239
Sau96I GGNCC 4 cut(s) 265, 1766, 2366, 2367
ScaI AGTACT 1 cut(s) 1205
SchI GAGTC 4 cut(s) 1372, 2157, 2483, 2502
ScrFI CCNGG 2 cut(s) 1511, 1791
SduI GDGCHC 4 cut(s) 312, 1181, 2360, 2370
SfaNI GCATC 4 cut(s) 245, 675, 1049, 1585
SfcI CTRYAG 2 cut(s) 1123, 1494
SinI GGWCC 2 cut(s) 265, 1766
SmiMI CAYNNNNRTG 3 cut(s) 79, 717, 1300
SmlI CTYRAG 2 cut(s) 350, 737
SmoI CTYRAG 2 cut(s) 350, 737
SnaBI TACGTA 1 cut(s) 871
SphI GCATGC 1 cut(s) 2032
SsiI CCGC 3 cut(s) 1915, 2202, 2486
SspI AATATT 1 cut(s) 929
SspMI CTAG 6 cut(s) 687, 842, 1883, 2015, 2303, 2527
StyD4I CCNGG 2 cut(s) 1509, 1789
StyI CCWWGG 1 cut(s) 1155
TaaI ACNGT 3 cut(s) 618, 1624, 1846
TaiI ACGT 4 cut(s) 48, 79, 828, 873
TaqI TCGA 8 cut(s) 126, 200, 209, 402, 1113, 1577, 1593, 2007
TatI WGTACW 4 cut(s) 778, 994, 1203, 2399
Tru1I TTAA 9 cut(s) 254, 437, 530, 1016, 1083, 1373, 1457, 1520, 1674
Tru9I TTAA 9 cut(s) 254, 437, 530, 1016, 1083, 1373, 1457, 1520, 1674
TseFI GTSAC 2 cut(s) 1376, 1690
TseI GCWGC 5 cut(s) 510, 1496, 1922, 2376, 2379
Tsp45I GTSAC 2 cut(s) 1376, 1690
TspGWI ACGGA 2 cut(s) 1632, 1828
Van91I CCANNNNNTGG 2 cut(s) 274, 304
VpaK11BI GGWCC 2 cut(s) 265, 1766
VspI ATTAAT 1 cut(s) 1083
XapI RAATTY 3 cut(s) 807, 1213, 2068
XbaI TCTAGA 1 cut(s) 2014
XceI RCATGY 2 cut(s) 1120, 2032
XmiI GTMKAC 3 cut(s) 867, 1113, 1582
XmnI GAANNNNTTC 2 cut(s) 583, 795
XspI CTAG 6 cut(s) 687, 842, 1883, 2015, 2303, 2527
ZrmI AGTACT 1 cut(s) 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.