RLG00000026641

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
4523623 .. 4529603
5981 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026641

Sequence Viewer

Length: 3735 bp
ATGGCCGCTTCTTCTTCTTCCTCTTCCTCTGCAGCTGTCGGTCGTTGGAACTACGATGTCTTCATCAGTTTTAGAGGCGATGACACTCGCAAGATCTTTGTCGGCCATCTCTACAAAGCTCTCCATCAGAAAGCAATCAACACCTTCATCGATTCCGACGAGCTTAGAAACGGTAACAACCCTTCAGAGCTTCTTGAAGCCATCGCCGACTCGAGGCTTTCCGTTGTGGTGTTCTCCAAACACTATGCTTCTTCCAAGTGGTGCCTCAAAGAGCTGGTCAAGATCGTGGAGTGCATGAAAACGATGAAGCAAATTGTGGTGCCCGTTTTCTACGAGCTCGATGGTTCTGATATTCCGAAACTCGAGGCGAGTTTTGAGCAAGTTTTTGCTGAACATATGCATGATTCTAATGCCGATGTGGAAGAGGTGCAGAGGTGGAAGTCTGCTCTAGTTGAGGTCTCCAATTTATCTGGCTGGGATTCACGAAATTATGAGGATGACGCCAAGCTTATTGAGAAAATAGTCGGTGATATTTCTAAAAGATTGATCCGTGTCTCATCCAGTATAGACAATGTTTTGGTTGGAATGGATAAACACATTGCAGAAATAGATGTACTATTATGTCTTGGGGTGGATGATGTTCGTGGGATTGGAATATTTGGAATGCCTGGTATAGGTAAAACAACCATTGCTCGAGCTGTTTATGATGAAATCACTTGTCAGTTTGAACACTATTGCTTTCTTGAAAATGTCAAAGATGGTTTCAAGAATAAAGGTGCTGTACATATGCAGGAAGAACTTCTATCTAGAATCTTGAAGAAAAAGGTGTGTACCTCAGGTAATTTGAATACAGGCTTCAAGATGGTTATGGAAAGGCTGAATAAGAAAAGAGTTTTGCTTGTTCTTGATGATGTGGAAAATTTTTCCCAAATTGAAGCCTTACTCGGAAAGCAATGTTCATTTGGTGGTGGAAGTAGAATCATTATAACAACTAGAGATATGCAATCACTAAGTGGAGTGCAGGAGAGATATAATCCCAAATTTTTAAGTGATGATGAAGATCTTGAGCTTTTTATGCAGTATGCGTTCAGAACACACCAACCCACAGGAGATTACGATTCTCTCTCAAGGCTTGCCATAGAATATGCTCAAGGTCTGCCTTTAGGACTTAAAGTTTTGGGAGCTTTTCTTGATAGCAAAAGTGCATGTGAGTGGGAAGATGAGCTAGAAAGAATAAAGAAAATCCCACACATAGAAATTCAGGGTCTGCTTAGAACAAGCTTTGATGGACTCGATCCTTTACAAAAGGATATATTTCTAGATATTGCATGCTTCTTCAGAGGAATGGACAAAGGATATGTAACAAAAGTTCTGGAAAGTTGTGGTTTTTACCCCCATAGTGGATTACGAGTACTACTTGATAGAGCTCTCATCACGATCTCAGATGACAATAGGCTCGAAATGCATGATTTACTACAAGAAATAGGTTGGGAAATCGTCCGACGACAATCAATTAAAGAACCTGGGAAGCGCAGTAGGTTGTGGGTTTATGAAGATGTCGATCATGTGTTCAGTCAAAATACGGCTACAGATGCAGTTGAGGGCATAATGCTTGACTTGTCAAGATCAAAAGAGCCTCTGAAAAAGTTGACAATTATTAATCTAAGTCACTCCCAATACCTTAAGAAAATCCCTGACTTCACTAAGGCGACGAATATGAAGAAACTAATTCTTGATAGTTGTTCAAGTTTATTGGAGGTTCATGCGTCCATTTCAGCTCTTCAAAACCTTGTTGTCCTGAGTCTAAAAGGGTGCAAAGCAGTTAAGAGTCTTCCGGGTAGCATTTACATGAAATCTCTTAAGACCCTTGATCTTTCTGGCTGCTCAAATCTTAAGATGTTTCCAGAGATCTCAGGAATTATGGAGGACCTATCGGAGCTTTATTTAAATGAGACTGCAATTGAAGAATTACCGTCATCGATTGAACAGCTTCAGGGGCTTGTGTTATTGAATATGGCAGACTGCAGAAGCCTTGTCTGTCTTCCAGACAATATCTGTAATTTGGCATACCTTACAAATCTCACTCTCTCTGGGTGCTCAAAACTTTATCGTTTGCCTGAGAACTTGGGGAATTTAGAATCCTTGATGGTCCTTGAAATAGAAAGAAGTGGTATAAAAGAAATCCCTTTTTCGATCTTACGTGTGAATAAGCTTAACAGATTATCATGTGATGGATGTAAAGAAATGATGGCGCCCCTTTCATCATGGTCATCATCAATCAAAGGATATTATACTTACTCTGGTATGCTACATCTTGATTTAAATGACTGCAATCTGATGGTATTATCAGATGGTATTGCTCATTTGTCCTCATTAAGAACATTAGAGCTGCGCAGAAACAACTTGGAGAGCTTGCCTGCAGCAATGAATCGACTTCGTCGTTTATCACATCTTGAATTAGAAGCATGTAAGAGATTGAAATCAATACCTGAGCTTTCATCAAGTATTAGTTACATAGATGCACATGATTGCACAGCTTTGGAAACAGTTTCAACACCAAAGCCTCGCTCTTCTACAAATATTTGCTTCACATTTTCAAATTGCCTCCAGCTGATACAAACAAATCTATTCAAAGATATTGTGGAAACTTATTCTCATTATCAGGGTAGCTATCTACGACCTCTTTCCTTTAGTATGTCACTTCCTGGAAGTGAAATTCCTCATTGGTTCAACCATCAGTGTAAGGGATTCTCAGTGAATGTGCAGCTACCACAGAATTGGTTTGATGATAAGTTTTTGGGATTTGCTATATGCGGTGTTAGTAACTTCAAGGGTGCCCATAATGATGCATCCGATCTATCTGCTGTTTGTTTTTGTACCTTCAAAGGAAATCATGGTGAGTACAAGTTCAGTTTTCATTTGCTTGATTGGGGTTTCAGAACAAACAGATTCCTCCAGTCAGATCACATGTTCCTGGGATATGTGCCATGGTCGCAATATCGCTTCAGTGATGAAGGGAAGCCAGTCAATGAATGCTACTACACTGAAGCCACATTTGAGATTTTGGTAGAAAATGGAGTCTATGCACATGATGATTACAGGACAGTAATACGACGGCATTGCATCACAAGTAGCGGAGTGCGTTTGTTTCATGGTAATTACATGGAACTGCAAAATCTAAGCATCACTCAGCCTAATTCTCATCATGATAGCTGTGAAATCCTGTTGGACTCTGCGAGGAAGAGAAAGAGAGAAATAGCAGGGGTGACAATGCAGTGGAAGCGGCCTCCTGCAGAAGAGGTGTTCACTGAGCAAGAGCAAGAAGGATCCCTATCAAGGGAAGGGTCCCTGGCGGGGGAAGGGTCCTCCGCGGGCAAGAGGTCCTCGGCAGGGGAAGGGGTTCTTTCTATCCTTTCTTCAGTAGCAACAGTAGAAAGTGGTGCCAATGAACGTGATGGGCCAACTATCCCTAATCGTACTAACAGAAGAAGGCGCACAAATTTGCGAAATTCGGCAACGTGGATACGAGATACAAATCAACTTATTGATGACGGCCATGCTTGGAGAAAGTATGGCCAAAAGGAGATACTTGGATCCAGATATCCCAGAAACTATTACAGATGCACTTATCGGATGGATCAAGGCTGTATGGCCACTAAGCACACCCGTTACCGGCATACAGGACATAGAAGAGTTCTATTTGGCATATTAAGTTCTGTCATTTTGATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1245

Amino Acids

140.72

Weight (kDa)

6.54

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 17 - 188 4.3e-50 TIR domain
TIR_2 PF13676 20 - 131 7.8e-15 TIR domain
NB-ARC PF00931 212 - 365 1.6e-17 NB-ARC domain
WHD_ROQ1 PF23282 435 - 504 4.6e-22 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 586 - 697 1.1e-08 Leucine-rich repeat region
LRR_13 PF23286 617 - 702 8.3e-12 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 684 - 749 2.5e-08 Leucine-rich repeat region
LRR_14 PF23598 771 - 832 6.2e-07 Leucine-rich repeat region
LRR_8 PF13855 771 - 823 2.7e-06 Leucine rich repeat
C-JID PF20160 901 - 1050 8e-20 C-JID domain
WRKY PF03106 1183 - 1225 3.7e-15 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
Acc16I TGCGCA 1 cut(s) 2393
AccB1I GGYRCC 5 cut(s) 261, 319, 2251, 2834, 3440
AccII CGCG 1 cut(s) 3371
AciI CCGC 7 cut(s) 6, 2814, 3135, 3283, 3353, 3369, 3371
AclWI GGATC 7 cut(s) 541, 1289, 3321, 3334, 3588, 3601, 3645
AcoI YGGCCR 5 cut(s) 3, 103, 3553, 3574, 3651
AcsI RAATTY 7 cut(s) 919, 1040, 1257, 2131, 2715, 3499, 3508
AcuI CTGAAG 6 cut(s) 168, 1321, 1976, 2989, 3066, 3402
AcyI GRCGYC 2 cut(s) 501, 2252
AdeI CACNNNGTG 1 cut(s) 1013
AfaI GTAC 7 cut(s) 615, 783, 832, 1413, 2878, 2903, 3478
AfiI CCNNNNNNNGG 9 cut(s) 213, 674, 1400, 3336, 3337, 3354, 3355, 3390, 3672
AflII CTTAAG 3 cut(s) 1682, 1859, 1892
AflIII ACRYGT 2 cut(s) 2200, 2967
AjnI CCWGG 5 cut(s) 667, 1522, 2704, 2973, 3348
Alw21I GWGCWC 3 cut(s) 339, 1429, 2099
Alw26I GTCTC 3 cut(s) 463, 559, 1946
AlwI GGATC 7 cut(s) 541, 1289, 3321, 3334, 3588, 3601, 3645
AlwNI CAGNNNCTG 1 cut(s) 1267
Ama87I CYCGRG 3 cut(s) 211, 362, 693
AoxI GGCC 7 cut(s) 3, 103, 3284, 3458, 3553, 3574, 3651
ApeKI GCWGC 5 cut(s) 32, 1881, 2389, 2420, 2764
ApoI RAATTY 7 cut(s) 919, 1040, 1257, 2131, 2715, 3499, 3508
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AseI ATTAAT 1 cut(s) 1659
Asp700I GAANNNNTTC 3 cut(s) 798, 1989, 3399
AspLEI GCGC 4 cut(s) 1533, 2254, 2394, 3495
AspS9I GGNCC 6 cut(s) 1927, 2149, 3345, 3363, 3381, 3458
AsuC2I CCSGG 1 cut(s) 1836
AsuHPI GGTGA 3 cut(s) 539, 2909, 3277
AvaI CYCGRG 3 cut(s) 211, 362, 693
AvaII GGWCC 5 cut(s) 1927, 2149, 3345, 3363, 3381
AxyI CCTNAGG 1 cut(s) 835
BaeGI GKGCMC 2 cut(s) 324, 2839
BalI TGGCCA 2 cut(s) 3576, 3653
BamHI GGATCC 2 cut(s) 3326, 3593
BanI GGYRCC 5 cut(s) 261, 319, 2251, 2834, 3440
BanII GRGCYC 2 cut(s) 339, 1429
BarI GAAGNNNNNNTAC 2 cut(s) 166, 198
BbsI GAAGAC 3 cut(s) 52, 1823, 2033
Bbv12I GWGCWC 3 cut(s) 339, 1429, 2099
BbvI GCAGC 5 cut(s) 44, 1868, 2376, 2432, 2776
BceAI ACGGC 3 cut(s) 1599, 3131, 3568
BcgI CGANNNNNNTGC 4 cut(s) 2843, 2877, 3102, 3136
BciT130I CCWGG 5 cut(s) 669, 1524, 2706, 2975, 3350
BciVI GTATCC 1 cut(s) 3516
BclI TGATCA 1 cut(s) 3726
BcnI CCSGG 1 cut(s) 1836
BcoDI GTCTC 3 cut(s) 463, 559, 1946
BfaI CTAG 5 cut(s) 449, 807, 993, 1226, 1319
BfmI CTRYAG 5 cut(s) 30, 1587, 2023, 2418, 3291
BfoI RGCGCY 1 cut(s) 2255
BfrI CTTAAG 3 cut(s) 1682, 1859, 1892
BfuI GTATCC 1 cut(s) 3516
BglII AGATCT 3 cut(s) 93, 1060, 1908
BisI GCNGC 7 cut(s) 6, 33, 1882, 2390, 2421, 2765, 3284
BlsI GCNGC 7 cut(s) 7, 34, 1883, 2391, 2422, 2766, 3285
BmcAI AGTACT 1 cut(s) 1413
Bme1390I CCNGG 6 cut(s) 669, 1524, 1836, 2706, 2975, 3350
Bme18I GGWCC 5 cut(s) 1927, 2149, 3345, 3363, 3381
BmeT110I CYCGRG 3 cut(s) 211, 362, 693
BmgT120I GGNCC 6 cut(s) 1927, 2149, 3345, 3363, 3381, 3458
BmrFI CCNGG 6 cut(s) 669, 1524, 1836, 2706, 2975, 3350
BmsI GCATC 7 cut(s) 1582, 2509, 2836, 2858, 3132, 3192, 3611
BpiI GAAGAC 3 cut(s) 52, 1823, 2033
BpmI CTGGAG 2 cut(s) 2591, 2939
Bpu10I CCTNAGC 1 cut(s) 2490
BpuEI CTTGAG 3 cut(s) 1085, 1111, 1134
BpuMI CCSGG 1 cut(s) 1836
Bsa29I ATCGAT 2 cut(s) 150, 1979
BsaAI YACGTR 1 cut(s) 2201
BsaBI GATNNNNATC 5 cut(s) 1059, 1560, 2479, 3331, 3534
BsaHI GRCGYC 2 cut(s) 501, 2252
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 6 cut(s) 1523, 2974, 2987, 3348, 3369, 3384
Bsc4I CCNNNNNNNGG 9 cut(s) 213, 674, 1400, 3336, 3337, 3354, 3355, 3390, 3672
Bse118I RCCGGY 1 cut(s) 3672
Bse1I ACTGG 3 cut(s) 561, 2956, 3023
Bse21I CCTNAGG 1 cut(s) 835
Bse3DI GCAATG 5 cut(s) 597, 687, 959, 2430, 3118
Bse8I GATNNNNATC 5 cut(s) 1059, 1560, 2479, 3331, 3534
BseBI CCWGG 5 cut(s) 669, 1524, 2706, 2975, 3350
BseCI ATCGAT 2 cut(s) 150, 1979
BseDI CCNNGG 6 cut(s) 1523, 2974, 2987, 3348, 3369, 3384
BseGI GGATG 6 cut(s) 502, 557, 640, 2240, 2849, 3639
BseJI GATNNNNATC 5 cut(s) 1059, 1560, 2479, 3331, 3534
BseLI CCNNNNNNNGG 9 cut(s) 213, 674, 1400, 3336, 3337, 3354, 3355, 3390, 3672
BseMI GCAATG 5 cut(s) 597, 687, 959, 2430, 3118
BseMII CTCAG 9 cut(s) 849, 1455, 1790, 1926, 2109, 2481, 2766, 3203, 3300
BseNI ACTGG 3 cut(s) 561, 2956, 3023
BseSI GKGCMC 2 cut(s) 324, 2839
BseXI GCAGC 5 cut(s) 44, 1868, 2376, 2432, 2776
BseYI CCCAGC 1 cut(s) 474
BsgI GTGCAG 3 cut(s) 449, 1040, 2783
Bsh1236I CGCG 1 cut(s) 3371
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 7 cut(s) 5, 105, 3286, 3460, 3555, 3576, 3653
BshNI GGYRCC 5 cut(s) 261, 319, 2251, 2834, 3440
BshVI ATCGAT 2 cut(s) 150, 1979
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 3 cut(s) 339, 1429, 2099
BsiHKCI CYCGRG 3 cut(s) 211, 362, 693
BsiSI CCGG 2 cut(s) 1835, 3673
BslFI GGGAC 1 cut(s) 3331
BslI CCNNNNNNNGG 9 cut(s) 213, 674, 1400, 3336, 3337, 3354, 3355, 3390, 3672
BsmAI GTCTC 3 cut(s) 463, 559, 1946
BsmFI GGGAC 1 cut(s) 3331
BsmI GAATGC 2 cut(s) 669, 3038
BsnI GGCC 7 cut(s) 5, 105, 3286, 3460, 3555, 3576, 3653
Bso31I GGTCTC 1 cut(s) 463
BsoBI CYCGRG 3 cut(s) 211, 362, 693
Bsp1286I GDGCHC 5 cut(s) 324, 339, 1429, 2099, 2839
Bsp1407I TGTACA 1 cut(s) 781
Bsp19I CCATGG 1 cut(s) 2987
BspACI CCGC 7 cut(s) 6, 2814, 3135, 3283, 3353, 3369, 3371
BspANI GGCC 7 cut(s) 5, 105, 3286, 3460, 3555, 3576, 3653
BspCNI CTCAG 9 cut(s) 848, 1454, 1791, 1925, 2110, 2482, 2765, 3202, 3301
BspDI ATCGAT 2 cut(s) 150, 1979
BspFNI CGCG 1 cut(s) 3371
BspHI TCATGA 1 cut(s) 3205
BspMAI CTGCAG 4 cut(s) 34, 2027, 2422, 3295
BspPI GGATC 7 cut(s) 541, 1289, 3321, 3334, 3588, 3601, 3645
BspQI GCTCTTC 2 cut(s) 1785, 2575
BspT107I GGYRCC 5 cut(s) 261, 319, 2251, 2834, 3440
BspTI CTTAAG 3 cut(s) 1682, 1859, 1892
BspTNI GGTCTC 1 cut(s) 463
BsrDI GCAATG 5 cut(s) 597, 687, 959, 2430, 3118
BsrFI RCCGGY 1 cut(s) 3672
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 3 cut(s) 561, 2956, 3023
BssAI RCCGGY 1 cut(s) 3672
BssECI CCNNGG 6 cut(s) 1523, 2974, 2987, 3348, 3369, 3384
BssNI GRCGYC 2 cut(s) 501, 2252
BssT1I CCWWGG 1 cut(s) 2987
Bst2UI CCWGG 5 cut(s) 669, 1524, 2706, 2975, 3350
Bst4CI ACNGT 5 cut(s) 173, 1974, 2548, 3106, 3430
Bst6I CTCTTC 7 cut(s) 28, 417, 1785, 2575, 3236, 3291, 3685
BstACI GRCGYC 2 cut(s) 501, 2252
BstAFI CTTAAG 3 cut(s) 1682, 1859, 1892
BstAUI TGTACA 1 cut(s) 781
BstBAI YACGTR 1 cut(s) 2201
BstC8I GCNNGC 5 cut(s) 1134, 1330, 2414, 2418, 3373
BstDSI CCRYGG 2 cut(s) 2987, 3369
BstENI CCTNNNNNAGG 1 cut(s) 672
BstF5I GGATG 6 cut(s) 502, 557, 640, 2240, 2849, 3639
BstFNI CGCG 1 cut(s) 3371
BstH2I RGCGCY 1 cut(s) 2255
BstHHI GCGC 4 cut(s) 1533, 2254, 2394, 3495
BstMAI GTCTC 3 cut(s) 463, 559, 1946
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 6 cut(s) 1075, 1462, 1592, 1996, 2992, 3280
BstNI CCWGG 5 cut(s) 669, 1524, 2706, 2975, 3350
BstNSI RCATGY 4 cut(s) 1209, 1332, 2469, 2971
BstSCI CCNGG 6 cut(s) 667, 1522, 1834, 2704, 2973, 3348
BstSFI CTRYAG 5 cut(s) 30, 1587, 2023, 2418, 3291
BstSLI GKGCMC 2 cut(s) 324, 2839
BstUI CGCG 1 cut(s) 3371
BstV1I GCAGC 5 cut(s) 44, 1868, 2376, 2432, 2776
BstV2I GAAGAC 3 cut(s) 52, 1823, 2033
BstX2I RGATCY 5 cut(s) 93, 1060, 1908, 3326, 3593
BstXI CCANNNNNNTGG 1 cut(s) 2778
BstYI RGATCY 5 cut(s) 93, 1060, 1908, 3326, 3593
Bsu15I ATCGAT 2 cut(s) 150, 1979
Bsu36I CCTNAGG 1 cut(s) 835
BsuI GTATCC 1 cut(s) 3516
BsuRI GGCC 7 cut(s) 5, 105, 3286, 3460, 3555, 3576, 3653
BsuTUI ATCGAT 2 cut(s) 150, 1979
BtgI CCRYGG 2 cut(s) 2987, 3369
BtgZI GCGATG 2 cut(s) 93, 187
BtsCI GGATG 6 cut(s) 502, 557, 640, 2240, 2849, 3639
BtsI GCAGTG 1 cut(s) 3281
BtsIMutI CAGTG 6 cut(s) 2744, 2760, 3013, 3042, 3281, 3306
Cac8I GCNNGC 5 cut(s) 1134, 1330, 2414, 2418, 3373
CaiI CAGNNNCTG 1 cut(s) 1267
CciI TCATGA 1 cut(s) 3205
CfoI GCGC 4 cut(s) 1533, 2254, 2394, 3495
Cfr10I RCCGGY 1 cut(s) 3672
Cfr13I GGNCC 6 cut(s) 1927, 2149, 3345, 3363, 3381, 3458
Cfr42I CCGCGG 1 cut(s) 3372
ClaI ATCGAT 2 cut(s) 150, 1979
CseI GACGC 2 cut(s) 509, 1755
Csp6I GTAC 7 cut(s) 614, 782, 831, 1412, 2877, 2902, 3477
CviQI GTAC 7 cut(s) 614, 782, 831, 1412, 2877, 2902, 3477
DinI GGCGCC 1 cut(s) 2253
DraI TTTAAA 2 cut(s) 1947, 2322
DraIII CACNNNGTG 1 cut(s) 1013
EaeI YGGCCR 5 cut(s) 3, 103, 3553, 3574, 3651
Eam1104I CTCTTC 7 cut(s) 28, 417, 1785, 2575, 3236, 3291, 3685
EarI CTCTTC 7 cut(s) 28, 417, 1785, 2575, 3236, 3291, 3685
Ecl136II GAGCTC 2 cut(s) 337, 1427
Eco130I CCWWGG 1 cut(s) 2987
Eco24I GRGCYC 2 cut(s) 339, 1429
Eco31I GGTCTC 1 cut(s) 463
Eco32I GATATC 1 cut(s) 3602
Eco47I GGWCC 5 cut(s) 1927, 2149, 3345, 3363, 3381
Eco53kI GAGCTC 2 cut(s) 337, 1427
Eco57I CTGAAG 6 cut(s) 168, 1321, 1976, 2989, 3066, 3402
Eco81I CCTNAGG 1 cut(s) 835
Eco88I CYCGRG 3 cut(s) 211, 362, 693
EcoICRI GAGCTC 2 cut(s) 337, 1427
EcoNI CCTNNNNNAGG 1 cut(s) 672
EcoO109I RGGNCCY 4 cut(s) 1927, 3345, 3363, 3381
EcoRII CCWGG 5 cut(s) 667, 1522, 2704, 2973, 3348
EcoRV GATATC 1 cut(s) 3602
EcoT14I CCWWGG 1 cut(s) 2987
EcoT22I ATGCAT 3 cut(s) 402, 1467, 2851
EcoT38I GRGCYC 2 cut(s) 339, 1429
EgeI GGCGCC 1 cut(s) 2253
EheI GGCGCC 1 cut(s) 2253
ErhI CCWWGG 1 cut(s) 2987
FalI AAGNNNNNCTT 2 cut(s) 3387, 3419
FaqI GGGAC 1 cut(s) 3331
FauI CCCGC 2 cut(s) 3346, 3364
FauNDI CATATG 2 cut(s) 396, 786
FbaI TGATCA 1 cut(s) 3726
Fnu4HI GCNGC 7 cut(s) 6, 33, 1882, 2390, 2421, 2765, 3284
FokI GGATG 6 cut(s) 509, 544, 647, 2247, 2836, 3646
FriOI GRGCYC 2 cut(s) 339, 1429
Fsp4HI GCNGC 7 cut(s) 6, 33, 1882, 2390, 2421, 2765, 3284
FspBI CTAG 5 cut(s) 449, 807, 993, 1226, 1319
FspI TGCGCA 1 cut(s) 2393
GlaI GCGC 4 cut(s) 1532, 2253, 2393, 3494
GluI GCNGC 7 cut(s) 6, 33, 1882, 2390, 2421, 2765, 3284
GsaI CCCAGC 1 cut(s) 478
GsuI CTGGAG 2 cut(s) 2591, 2939
HaeII RGCGCY 1 cut(s) 2255
HaeIII GGCC 7 cut(s) 5, 105, 3286, 3460, 3555, 3576, 3653
HapII CCGG 2 cut(s) 1835, 3673
HgaI GACGC 2 cut(s) 509, 1755
HhaI GCGC 4 cut(s) 1533, 2254, 2394, 3495
Hin1I GRCGYC 2 cut(s) 501, 2252
Hin6I GCGC 4 cut(s) 1531, 2252, 2392, 3493
HinP1I GCGC 4 cut(s) 1531, 2252, 2392, 3493
HincII GTYRAC 1 cut(s) 1650
HindII GTYRAC 1 cut(s) 1650
HindIII AAGCTT 3 cut(s) 506, 1279, 2210
HpaII CCGG 2 cut(s) 1835, 3673
HphI GGTGA 3 cut(s) 539, 2909, 3277
Hpy166II GTNNAC 3 cut(s) 831, 1650, 3306
Hpy8I GTNNAC 3 cut(s) 831, 1650, 3306
Hpy99I CGWCG 5 cut(s) 161, 1506, 1714, 2442, 3117
HpyAV CCTTC 9 cut(s) 154, 192, 2890, 3008, 3317, 3335, 3353, 3389, 3483
HpyCH4III ACNGT 5 cut(s) 173, 1974, 2548, 3106, 3430
HpyCH4IV ACGT 3 cut(s) 2200, 3451, 3518
HpyF10VI GCNNNNNNNGC 6 cut(s) 1075, 1462, 1592, 1996, 2992, 3280
HpySE526I ACGT 3 cut(s) 2200, 3451, 3518
Hsp92I GRCGYC 2 cut(s) 501, 2252
HspAI GCGC 4 cut(s) 1531, 2252, 2392, 3493
KasI GGCGCC 1 cut(s) 2251
KflI GGGWCCC 1 cut(s) 3345
Ksp22I TGATCA 1 cut(s) 3726
KspI CCGCGG 1 cut(s) 3372
LguI GCTCTTC 2 cut(s) 1785, 2575
LmnI GCTCC 2 cut(s) 1181, 1936
Lsp1109I GCAGC 5 cut(s) 44, 1868, 2376, 2432, 2776
LweI GCATC 7 cut(s) 1582, 2509, 2836, 2858, 3132, 3192, 3611
MaeI CTAG 5 cut(s) 449, 807, 993, 1226, 1319
MaeII ACGT 3 cut(s) 2200, 3451, 3518
MaeIII GTNAC 8 cut(s) 173, 1360, 1667, 2510, 2697, 2822, 3265, 3668
MfeI CAATTG 1 cut(s) 1959
MflI RGATCY 5 cut(s) 93, 1060, 1908, 3326, 3593
MhlI GDGCHC 5 cut(s) 324, 339, 1429, 2099, 2839
MlsI TGGCCA 2 cut(s) 3576, 3653
MluNI TGGCCA 2 cut(s) 3576, 3653
Mly113I GGCGCC 1 cut(s) 2252
MlyI GAGTC 6 cut(s) 203, 1284, 1810, 1837, 3087, 3224
MmeI TCCRAC 5 cut(s) 26, 180, 562, 1525, 3207
Mox20I TGGCCA 2 cut(s) 3576, 3653
Mph1103I ATGCAT 3 cut(s) 402, 1467, 2851
MroXI GAANNNNTTC 3 cut(s) 798, 1989, 3399
MscI TGGCCA 2 cut(s) 3576, 3653
MslI CAYNNNNRTG 4 cut(s) 399, 1210, 1847, 2844
Msp20I TGGCCA 2 cut(s) 3576, 3653
MspA1I CMGCKG 3 cut(s) 35, 2611, 3371
MspCI CTTAAG 3 cut(s) 1682, 1859, 1892
MspI CCGG 2 cut(s) 1835, 3673
MspR9I CCNGG 6 cut(s) 669, 1524, 1836, 2706, 2975, 3350
MunI CAATTG 1 cut(s) 1959
Mva1269I GAATGC 2 cut(s) 669, 3038
MvaI CCWGG 5 cut(s) 669, 1524, 2706, 2975, 3350
MvnI CGCG 1 cut(s) 3371
MwoI GCNNNNNNNGC 6 cut(s) 1075, 1462, 1592, 1996, 2992, 3280
NarI GGCGCC 1 cut(s) 2252
NciI CCSGG 1 cut(s) 1836
NcoI CCATGG 1 cut(s) 2987
NdeI CATATG 2 cut(s) 396, 786
NmeAIII GCCGAG 1 cut(s) 3365
NmuCI GTSAC 3 cut(s) 1667, 2697, 3265
NsbI TGCGCA 1 cut(s) 2393
NsiI ATGCAT 3 cut(s) 402, 1467, 2851
NspI RCATGY 4 cut(s) 1209, 1332, 2469, 2971
PaeI GCATGC 1 cut(s) 1332
PaeR7I CTCGAG 3 cut(s) 211, 362, 693
PagI TCATGA 1 cut(s) 3205
PciI ACATGT 1 cut(s) 2967
PciSI GCTCTTC 2 cut(s) 1785, 2575
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 2437
PctI GAATGC 2 cut(s) 669, 3038
PdmI GAANNNNTTC 3 cut(s) 798, 1989, 3399
PflFI GACNNNGTC 1 cut(s) 2436
PfoI TCCNGGA 1 cut(s) 2704
PkrI GCNGC 7 cut(s) 7, 34, 1883, 2391, 2422, 2766, 3285
PleI GAGTC 6 cut(s) 203, 1284, 1809, 1836, 3086, 3224
PluTI GGCGCC 1 cut(s) 2255
PpsI GAGTC 6 cut(s) 203, 1284, 1809, 1836, 3086, 3224
Ppu21I YACGTR 1 cut(s) 2201
PpuMI RGGWCCY 4 cut(s) 1927, 3345, 3363, 3381
PscI ACATGT 1 cut(s) 2967
PshBI ATTAAT 1 cut(s) 1659
PsiI TTATAA 1 cut(s) 986
Psp124BI GAGCTC 2 cut(s) 339, 1429
Psp5II RGGWCCY 4 cut(s) 1927, 3345, 3363, 3381
Psp6I CCWGG 5 cut(s) 667, 1522, 2704, 2973, 3348
PspFI CCCAGC 1 cut(s) 474
PspGI CCWGG 5 cut(s) 667, 1522, 2704, 2973, 3348
PspPI GGNCC 6 cut(s) 1927, 2149, 3345, 3363, 3381, 3458
PspPPI RGGWCCY 4 cut(s) 1927, 3345, 3363, 3381
PspXI VCTCGAGB 3 cut(s) 211, 362, 693
PsrI GAACNNNNNNTAC 2 cut(s) 1353, 1385
PstI CTGCAG 4 cut(s) 34, 2027, 2422, 3295
PstNI CAGNNNCTG 1 cut(s) 1267
PsuI RGATCY 5 cut(s) 93, 1060, 1908, 3326, 3593
PsyI GACNNNGTC 1 cut(s) 2436
PvuII CAGCTG 2 cut(s) 35, 2611
RsaI GTAC 7 cut(s) 615, 783, 832, 1413, 2878, 2903, 3478
RsaNI GTAC 7 cut(s) 614, 782, 831, 1412, 2877, 2902, 3477
RseI CAYNNNNRTG 4 cut(s) 399, 1210, 1847, 2844
SacI GAGCTC 2 cut(s) 339, 1429
SacII CCGCGG 1 cut(s) 3372
SapI GCTCTTC 2 cut(s) 1785, 2575
SatI GCNGC 7 cut(s) 6, 33, 1882, 2390, 2421, 2765, 3284
Sau96I GGNCC 6 cut(s) 1927, 2149, 3345, 3363, 3381, 3458
ScaI AGTACT 1 cut(s) 1413
SchI GAGTC 6 cut(s) 203, 1284, 1810, 1837, 3087, 3224
ScrFI CCNGG 6 cut(s) 669, 1524, 1836, 2706, 2975, 3350
SduI GDGCHC 5 cut(s) 324, 339, 1429, 2099, 2839
SfaNI GCATC 7 cut(s) 1582, 2509, 2836, 2858, 3132, 3192, 3611
SfcI CTRYAG 5 cut(s) 30, 1587, 2023, 2418, 3291
SfoI GGCGCC 1 cut(s) 2253
Sfr274I CTCGAG 3 cut(s) 211, 362, 693
Sfr303I CCGCGG 1 cut(s) 3372
SgrBI CCGCGG 1 cut(s) 3372
SinI GGWCC 5 cut(s) 1927, 2149, 3345, 3363, 3381
SlaI CTCGAG 3 cut(s) 211, 362, 693
SmiI ATTTAAAT 2 cut(s) 1947, 2322
SmiMI CAYNNNNRTG 4 cut(s) 399, 1210, 1847, 2844
SmlI CTYRAG 9 cut(s) 211, 362, 693, 1064, 1126, 1149, 1682, 1859, 1892
SmoI CTYRAG 9 cut(s) 211, 362, 693, 1064, 1126, 1149, 1682, 1859, 1892
SphI GCATGC 1 cut(s) 1332
SsiI CCGC 7 cut(s) 6, 2814, 3135, 3283, 3353, 3369, 3371
SspDI GGCGCC 1 cut(s) 2251
SspI AATATT 2 cut(s) 657, 2581
SspMI CTAG 5 cut(s) 449, 807, 993, 1226, 1319
SstI GAGCTC 2 cut(s) 339, 1429
StyD4I CCNGG 6 cut(s) 667, 1522, 1834, 2704, 2973, 3348
StyI CCWWGG 1 cut(s) 2987
SwaI ATTTAAAT 2 cut(s) 1947, 2322
TaaI ACNGT 5 cut(s) 173, 1974, 2548, 3106, 3430
TaiI ACGT 3 cut(s) 2203, 3454, 3521
TaqII GACCGA 1 cut(s) 29
TatI WGTACW 4 cut(s) 613, 781, 1411, 2901
TauI GCSGC 2 cut(s) 8, 3286
TscAI CASTG 6 cut(s) 2744, 2760, 3013, 3049, 3281, 3313
TseFI GTSAC 3 cut(s) 1667, 2697, 3265
TseI GCWGC 5 cut(s) 32, 1881, 2389, 2420, 2764
Tsp45I GTSAC 3 cut(s) 1667, 2697, 3265
TspGWI ACGGA 2 cut(s) 211, 539
TspRI CASTG 6 cut(s) 2744, 2760, 3013, 3049, 3281, 3313
Tth111I GACNNNGTC 1 cut(s) 2436
Vha464I CTTAAG 3 cut(s) 1682, 1859, 1892
VpaK11BI GGWCC 5 cut(s) 1927, 2149, 3345, 3363, 3381
VspI ATTAAT 1 cut(s) 1659
XagI CCTNNNNNAGG 1 cut(s) 672
XapI RAATTY 7 cut(s) 919, 1040, 1257, 2131, 2715, 3499, 3508
XbaI TCTAGA 2 cut(s) 806, 1318
XceI RCATGY 4 cut(s) 1209, 1332, 2469, 2971
XhoI CTCGAG 3 cut(s) 211, 362, 693
XmnI GAANNNNTTC 3 cut(s) 798, 1989, 3399
XspI CTAG 5 cut(s) 449, 807, 993, 1226, 1319
ZrmI AGTACT 1 cut(s) 1413
Zsp2I ATGCAT 3 cut(s) 402, 1467, 2851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.