TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 4 - 36 | 7.6e-10 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 267 - 344 | 1.1e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 276 - 346 | 1.1e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 346 - 432 | 4.7e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 348 - 456 | 1.4e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 441 - 526 | 3.9e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 442 - 543 | 2.9e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 524 - 689 | 3e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1714 |
| AccIII | TCCGGA | 2 cut(s) | 1090, 1372 |
| AciI | CCGC | 4 cut(s) | 100, 1204, 1425, 1486 |
| AclWI | GGATC | 5 cut(s) | 786, 835, 848, 1058, 1278 |
| AcoI | YGGCCR | 1 cut(s) | 1730 |
| AcsI | RAATTY | 3 cut(s) | 622, 1223, 2077 |
| AcuI | CTGAAG | 2 cut(s) | 1313, 2026 |
| AfaI | GTAC | 2 cut(s) | 181, 2070 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 440 |
| AflII | CTTAAG | 4 cut(s) | 800, 1010, 1195, 1292 |
| AflIII | ACRYGT | 1 cut(s) | 2246 |
| AjnI | CCWGG | 3 cut(s) | 121, 1620, 2256 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2252, 2284 |
| Alw21I | GWGCWC | 2 cut(s) | 28, 1568 |
| Alw26I | GTCTC | 4 cut(s) | 1415, 1510, 1593, 2125 |
| AlwI | GGATC | 5 cut(s) | 786, 835, 848, 1058, 1278 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 616, 1242, 1524 |
| Aor13HI | TCCGGA | 2 cut(s) | 1090, 1372 |
| AoxI | GGCC | 1 cut(s) | 1730 |
| ApeKI | GCWGC | 3 cut(s) | 816, 1068, 1350 |
| ApoI | RAATTY | 3 cut(s) | 622, 1223, 2077 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1488, 1520 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 704, 876, 1086, 1227, 1368 |
| AspS9I | GGNCC | 2 cut(s) | 1618, 2185 |
| AsuHPI | GGTGA | 1 cut(s) | 49 |
| AvaII | GGWCC | 2 cut(s) | 1618, 2185 |
| BalI | TGGCCA | 1 cut(s) | 1732 |
| BamHI | GGATCC | 1 cut(s) | 840 |
| BanI | GGYRCC | 1 cut(s) | 1714 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1635, 1667 |
| BbsI | GAAGAC | 1 cut(s) | 2245 |
| Bbv12I | GWGCWC | 2 cut(s) | 28, 1568 |
| BbvI | GCAGC | 3 cut(s) | 803, 1055, 1337 |
| BceAI | ACGGC | 3 cut(s) | 198, 1158, 1728 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 676, 710, 2219, 2253 |
| BciT130I | CCWGG | 3 cut(s) | 123, 1622, 2258 |
| BciVI | GTATCC | 1 cut(s) | 2286 |
| BclI | TGATCA | 1 cut(s) | 1171 |
| BcoDI | GTCTC | 4 cut(s) | 1415, 1510, 1593, 2125 |
| BfaI | CTAG | 5 cut(s) | 14, 104, 212, 1400, 2028 |
| BfmI | CTRYAG | 1 cut(s) | 695 |
| BfrI | CTTAAG | 4 cut(s) | 800, 1010, 1195, 1292 |
| BfuI | GTATCC | 1 cut(s) | 2286 |
| BglII | AGATCT | 1 cut(s) | 988 |
| BisI | GCNGC | 3 cut(s) | 817, 1069, 1351 |
| BlpI | GCTNAGC | 1 cut(s) | 1567 |
| BlsI | GCNGC | 3 cut(s) | 818, 1070, 1352 |
| Bme1390I | CCNGG | 3 cut(s) | 123, 1622, 2258 |
| Bme18I | GGWCC | 2 cut(s) | 1618, 2185 |
| BmgT120I | GGNCC | 2 cut(s) | 1618, 2185 |
| BmiI | GGNNCC | 3 cut(s) | 842, 1716, 2187 |
| BmrFI | CCNGG | 3 cut(s) | 123, 1622, 2258 |
| BmsI | GCATC | 4 cut(s) | 181, 503, 1921, 1972 |
| BpiI | GAAGAC | 1 cut(s) | 2245 |
| BpmI | CTGGAG | 2 cut(s) | 273, 478 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1567 |
| BpuEI | CTTGAG | 2 cut(s) | 1199, 2145 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2222 |
| BsaI | GGTCTC | 2 cut(s) | 1415, 2125 |
| BsaWI | WCCGGW | 2 cut(s) | 1090, 1372 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 246, 276 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 440 |
| Bse1I | ACTGG | 2 cut(s) | 256, 976 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2222 |
| BseAI | TCCGGA | 2 cut(s) | 1090, 1372 |
| BseBI | CCWGG | 3 cut(s) | 123, 1622, 2258 |
| BseGI | GGATG | 6 cut(s) | 196, 408, 412, 518, 743, 2305 |
| BseJI | GATNNNNATC | 1 cut(s) | 2222 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 440 |
| BseMII | CTCAG | 3 cut(s) | 873, 1578, 1581 |
| BseNI | ACTGG | 2 cut(s) | 256, 976 |
| BseXI | GCAGC | 3 cut(s) | 803, 1055, 1337 |
| BsgI | GTGCAG | 1 cut(s) | 1876 |
| BshFI | GGCC | 1 cut(s) | 1732 |
| BshNI | GGYRCC | 1 cut(s) | 1714 |
| BsiHKAI | GWGCWC | 2 cut(s) | 28, 1568 |
| BsiSI | CCGG | 3 cut(s) | 1091, 1373, 2062 |
| BslFI | GGGAC | 6 cut(s) | 417, 479, 943, 1153, 1220, 2171 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 440 |
| BsmAI | GTCTC | 4 cut(s) | 1415, 1510, 1593, 2125 |
| BsmFI | GGGAC | 6 cut(s) | 417, 479, 943, 1153, 1220, 2171 |
| BsmI | GAATGC | 4 cut(s) | 206, 819, 1029, 1311 |
| BsnI | GGCC | 1 cut(s) | 1732 |
| Bso31I | GGTCTC | 2 cut(s) | 1415, 2125 |
| Bsp1286I | GDGCHC | 2 cut(s) | 28, 1568 |
| Bsp13I | TCCGGA | 2 cut(s) | 1090, 1372 |
| Bsp143I | GATC | 7 cut(s) | 778, 840, 988, 1050, 1171, 1270, 1453 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1567 |
| BspACI | CCGC | 4 cut(s) | 100, 1204, 1425, 1486 |
| BspANI | GGCC | 1 cut(s) | 1732 |
| BspCNI | CTCAG | 3 cut(s) | 874, 1579, 1580 |
| BspEI | TCCGGA | 2 cut(s) | 1090, 1372 |
| BspHI | TCATGA | 3 cut(s) | 484, 1107, 1389 |
| BspLI | GGNNCC | 3 cut(s) | 842, 1716, 2187 |
| BspMAI | CTGCAG | 1 cut(s) | 699 |
| BspPI | GGATC | 5 cut(s) | 786, 835, 848, 1058, 1278 |
| BspQI | GCTCTTC | 1 cut(s) | 762 |
| BspT107I | GGYRCC | 1 cut(s) | 1714 |
| BspTI | CTTAAG | 4 cut(s) | 800, 1010, 1195, 1292 |
| BspTNI | GGTCTC | 2 cut(s) | 1415, 2125 |
| BsrI | ACTGG | 2 cut(s) | 256, 976 |
| BssMI | GATC | 7 cut(s) | 778, 840, 988, 1050, 1171, 1270, 1453 |
| Bst2UI | CCWGG | 3 cut(s) | 123, 1622, 2258 |
| Bst4CI | ACNGT | 4 cut(s) | 356, 1238, 1520, 2011 |
| Bst6I | CTCTTC | 4 cut(s) | 762, 1050, 1332, 1515 |
| BstAFI | CTTAAG | 4 cut(s) | 800, 1010, 1195, 1292 |
| BstC8I | GCNNGC | 2 cut(s) | 794, 1930 |
| BstDEI | CTNAG | 6 cut(s) | 278, 882, 1567, 1587, 1603, 1612 |
| BstF5I | GGATG | 6 cut(s) | 196, 408, 412, 518, 743, 2305 |
| BstKTI | GATC | 7 cut(s) | 781, 843, 991, 1053, 1174, 1273, 1456 |
| BstMAI | GTCTC | 4 cut(s) | 1415, 1510, 1593, 2125 |
| BstMBI | GATC | 7 cut(s) | 778, 840, 988, 1050, 1171, 1270, 1453 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 23, 191, 913, 1123, 1183, 1405, 1465 |
| BstNI | CCWGG | 3 cut(s) | 123, 1622, 2258 |
| BstNSI | RCATGY | 2 cut(s) | 574, 2250 |
| BstSCI | CCNGG | 3 cut(s) | 121, 1620, 2256 |
| BstSFI | CTRYAG | 1 cut(s) | 695 |
| BstV1I | GCAGC | 3 cut(s) | 803, 1055, 1337 |
| BstV2I | GAAGAC | 1 cut(s) | 2245 |
| BstX2I | RGATCY | 5 cut(s) | 778, 840, 988, 1050, 1270 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1559 |
| BstYI | RGATCY | 5 cut(s) | 778, 840, 988, 1050, 1270 |
| BsuI | GTATCC | 1 cut(s) | 2286 |
| BsuRI | GGCC | 1 cut(s) | 1732 |
| BtsCI | GGATG | 6 cut(s) | 196, 408, 412, 518, 743, 2305 |
| BtsI | GCAGTG | 2 cut(s) | 394, 646 |
| BtsIMutI | CAGTG | 4 cut(s) | 394, 646, 969, 1746 |
| Cac8I | GCNNGC | 2 cut(s) | 794, 1930 |
| CaiI | CAGNNNCTG | 3 cut(s) | 616, 1242, 1524 |
| CciI | TCATGA | 3 cut(s) | 484, 1107, 1389 |
| Cfr13I | GGNCC | 2 cut(s) | 1618, 2185 |
| Csp6I | GTAC | 2 cut(s) | 180, 2069 |
| CviQI | GTAC | 2 cut(s) | 180, 2069 |
| DdeI | CTNAG | 6 cut(s) | 278, 882, 1567, 1587, 1603, 1612 |
| DpnI | GATC | 7 cut(s) | 780, 842, 990, 1052, 1173, 1272, 1455 |
| DpnII | GATC | 7 cut(s) | 778, 840, 988, 1050, 1171, 1270, 1453 |
| EaeI | YGGCCR | 1 cut(s) | 1730 |
| Eam1104I | CTCTTC | 4 cut(s) | 762, 1050, 1332, 1515 |
| EarI | CTCTTC | 4 cut(s) | 762, 1050, 1332, 1515 |
| EciI | GGCGGA | 1 cut(s) | 89 |
| Eco31I | GGTCTC | 2 cut(s) | 1415, 2125 |
| Eco47I | GGWCC | 2 cut(s) | 1618, 2185 |
| Eco57I | CTGAAG | 2 cut(s) | 1313, 2026 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1618, 2185 |
| EcoRII | CCWGG | 3 cut(s) | 121, 1620, 2256 |
| EcoT22I | ATGCAT | 1 cut(s) | 245 |
| FaqI | GGGAC | 6 cut(s) | 417, 479, 943, 1153, 1220, 2171 |
| FauI | CCCGC | 1 cut(s) | 1197 |
| FauNDI | CATATG | 2 cut(s) | 825, 1317 |
| FbaI | TGATCA | 1 cut(s) | 1171 |
| Fnu4HI | GCNGC | 3 cut(s) | 817, 1069, 1351 |
| FokI | GGATG | 5 cut(s) | 203, 415, 419, 525, 730 |
| Fsp4HI | GCNGC | 3 cut(s) | 817, 1069, 1351 |
| FspBI | CTAG | 5 cut(s) | 14, 104, 212, 1400, 2028 |
| GluI | GCNGC | 3 cut(s) | 817, 1069, 1351 |
| GsuI | CTGGAG | 2 cut(s) | 273, 478 |
| HaeIII | GGCC | 1 cut(s) | 1732 |
| HapII | CCGG | 3 cut(s) | 1091, 1373, 2062 |
| HincII | GTYRAC | 2 cut(s) | 235, 1908 |
| HindII | GTYRAC | 2 cut(s) | 235, 1908 |
| HindIII | AAGCTT | 1 cut(s) | 1926 |
| HpaI | GTTAAC | 1 cut(s) | 1908 |
| HpaII | CCGG | 3 cut(s) | 1091, 1373, 2062 |
| HphI | GGTGA | 1 cut(s) | 49 |
| Hpy166II | GTNNAC | 3 cut(s) | 235, 449, 1908 |
| Hpy188I | TCNGA | 6 cut(s) | 892, 993, 1050, 1332, 1813, 2045 |
| Hpy8I | GTNNAC | 3 cut(s) | 235, 449, 1908 |
| Hpy99I | CGWCG | 1 cut(s) | 190 |
| HpyAV | CCTTC | 9 cut(s) | 334, 356, 596, 776, 854, 1105, 1387, 1676, 2296 |
| HpyCH4III | ACNGT | 4 cut(s) | 356, 1238, 1520, 2011 |
| HpyCH4IV | ACGT | 2 cut(s) | 378, 1626 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 23, 191, 913, 1123, 1183, 1405, 1465 |
| HpyF3I | CTNAG | 6 cut(s) | 278, 882, 1567, 1587, 1603, 1612 |
| HpySE526I | ACGT | 2 cut(s) | 378, 1626 |
| Kpn2I | TCCGGA | 2 cut(s) | 1090, 1372 |
| Ksp22I | TGATCA | 1 cut(s) | 1171 |
| KspAI | GTTAAC | 1 cut(s) | 1908 |
| Kzo9I | GATC | 7 cut(s) | 778, 840, 988, 1050, 1171, 1270, 1453 |
| LguI | GCTCTTC | 1 cut(s) | 762 |
| LmnI | GCTCC | 3 cut(s) | 254, 1114, 1396 |
| Lsp1109I | GCAGC | 3 cut(s) | 803, 1055, 1337 |
| LweI | GCATC | 4 cut(s) | 181, 503, 1921, 1972 |
| MaeI | CTAG | 5 cut(s) | 14, 104, 212, 1400, 2028 |
| MaeII | ACGT | 2 cut(s) | 378, 1626 |
| MaeIII | GTNAC | 8 cut(s) | 356, 581, 644, 979, 1757, 1787, 1840, 1882 |
| MalI | GATC | 7 cut(s) | 780, 842, 990, 1052, 1173, 1272, 1455 |
| MboI | GATC | 7 cut(s) | 778, 840, 988, 1050, 1171, 1270, 1453 |
| MfeI | CAATTG | 2 cut(s) | 1167, 1449 |
| MflI | RGATCY | 5 cut(s) | 778, 840, 988, 1050, 1270 |
| MhlI | GDGCHC | 2 cut(s) | 28, 1568 |
| MlsI | TGGCCA | 1 cut(s) | 1732 |
| MluNI | TGGCCA | 1 cut(s) | 1732 |
| MlyI | GAGTC | 3 cut(s) | 166, 1009, 1291 |
| MmeI | TCCRAC | 3 cut(s) | 244, 395, 1782 |
| Mox20I | TGGCCA | 1 cut(s) | 1732 |
| Mph1103I | ATGCAT | 1 cut(s) | 245 |
| MroI | TCCGGA | 2 cut(s) | 1090, 1372 |
| MroXI | GAANNNNTTC | 5 cut(s) | 704, 876, 1086, 1227, 1368 |
| MscI | TGGCCA | 1 cut(s) | 1732 |
| MslI | CAYNNNNRTG | 3 cut(s) | 824, 1034, 1316 |
| Msp20I | TGGCCA | 1 cut(s) | 1732 |
| MspCI | CTTAAG | 4 cut(s) | 800, 1010, 1195, 1292 |
| MspI | CCGG | 3 cut(s) | 1091, 1373, 2062 |
| MspR9I | CCNGG | 3 cut(s) | 123, 1622, 2258 |
| MunI | CAATTG | 2 cut(s) | 1167, 1449 |
| Mva1269I | GAATGC | 4 cut(s) | 206, 819, 1029, 1311 |
| MvaI | CCWGG | 3 cut(s) | 123, 1622, 2258 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 23, 191, 913, 1123, 1183, 1405, 1465 |
| NdeI | CATATG | 2 cut(s) | 825, 1317 |
| NdeII | GATC | 7 cut(s) | 778, 840, 988, 1050, 1171, 1270, 1453 |
| NlaIV | GGNNCC | 3 cut(s) | 842, 1716, 2187 |
| NmuCI | GTSAC | 5 cut(s) | 356, 581, 644, 1787, 1882 |
| NsiI | ATGCAT | 1 cut(s) | 245 |
| NspI | RCATGY | 2 cut(s) | 574, 2250 |
| PagI | TCATGA | 3 cut(s) | 484, 1107, 1389 |
| PciI | ACATGT | 1 cut(s) | 2246 |
| PciSI | GCTCTTC | 1 cut(s) | 762 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 844 |
| PctI | GAATGC | 4 cut(s) | 206, 819, 1029, 1311 |
| PdmI | GAANNNNTTC | 5 cut(s) | 704, 876, 1086, 1227, 1368 |
| PfeI | GAWTC | 9 cut(s) | 107, 320, 553, 606, 805, 1104, 1386, 1607, 1891 |
| PfoI | TCCNGGA | 1 cut(s) | 2256 |
| PkrI | GCNGC | 3 cut(s) | 818, 1070, 1352 |
| PleI | GAGTC | 3 cut(s) | 166, 1009, 1291 |
| PpsI | GAGTC | 3 cut(s) | 166, 1009, 1291 |
| PpuMI | RGGWCCY | 2 cut(s) | 1618, 2185 |
| PscI | ACATGT | 1 cut(s) | 2246 |
| Psp5II | RGGWCCY | 2 cut(s) | 1618, 2185 |
| Psp6I | CCWGG | 3 cut(s) | 121, 1620, 2256 |
| PspGI | CCWGG | 3 cut(s) | 121, 1620, 2256 |
| PspN4I | GGNNCC | 3 cut(s) | 842, 1716, 2187 |
| PspPI | GGNCC | 2 cut(s) | 1618, 2185 |
| PspPPI | RGGWCCY | 2 cut(s) | 1618, 2185 |
| PstI | CTGCAG | 1 cut(s) | 699 |
| PstNI | CAGNNNCTG | 3 cut(s) | 616, 1242, 1524 |
| PsuI | RGATCY | 5 cut(s) | 778, 840, 988, 1050, 1270 |
| RsaI | GTAC | 2 cut(s) | 181, 2070 |
| RsaNI | GTAC | 2 cut(s) | 180, 2069 |
| RseI | CAYNNNNRTG | 3 cut(s) | 824, 1034, 1316 |
| SapI | GCTCTTC | 1 cut(s) | 762 |
| SatI | GCNGC | 3 cut(s) | 817, 1069, 1351 |
| Sau3AI | GATC | 7 cut(s) | 778, 840, 988, 1050, 1171, 1270, 1453 |
| Sau96I | GGNCC | 2 cut(s) | 1618, 2185 |
| SchI | GAGTC | 3 cut(s) | 166, 1009, 1291 |
| ScrFI | CCNGG | 3 cut(s) | 123, 1622, 2258 |
| SduI | GDGCHC | 2 cut(s) | 28, 1568 |
| SfaNI | GCATC | 4 cut(s) | 181, 503, 1921, 1972 |
| SfcI | CTRYAG | 1 cut(s) | 695 |
| SinI | GGWCC | 2 cut(s) | 1618, 2185 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 824, 1034, 1316 |
| SmlI | CTYRAG | 6 cut(s) | 800, 1010, 1178, 1195, 1292, 2160 |
| SmoI | CTYRAG | 6 cut(s) | 800, 1010, 1178, 1195, 1292, 2160 |
| SsiI | CCGC | 4 cut(s) | 100, 1204, 1425, 1486 |
| SspI | AATATT | 1 cut(s) | 1751 |
| SspMI | CTAG | 5 cut(s) | 14, 104, 212, 1400, 2028 |
| StyD4I | CCNGG | 3 cut(s) | 121, 1620, 2256 |
| TaaI | ACNGT | 4 cut(s) | 356, 1238, 1520, 2011 |
| TaiI | ACGT | 2 cut(s) | 381, 1629 |
| TaqI | TCGA | 6 cut(s) | 221, 327, 870, 1062, 1344, 1964 |
| TfiI | GAWTC | 9 cut(s) | 107, 320, 553, 606, 805, 1104, 1386, 1607, 1891 |
| TscAI | CASTG | 4 cut(s) | 394, 653, 976, 1746 |
| TseFI | GTSAC | 5 cut(s) | 356, 581, 644, 1787, 1882 |
| TseI | GCWGC | 3 cut(s) | 816, 1068, 1350 |
| Tsp45I | GTSAC | 5 cut(s) | 356, 581, 644, 1787, 1882 |
| TspGWI | ACGGA | 3 cut(s) | 203, 853, 1669 |
| TspRI | CASTG | 4 cut(s) | 394, 653, 976, 1746 |
| Vha464I | CTTAAG | 4 cut(s) | 800, 1010, 1195, 1292 |
| VpaK11BI | GGWCC | 2 cut(s) | 1618, 2185 |
| XapI | RAATTY | 3 cut(s) | 622, 1223, 2077 |
| XceI | RCATGY | 2 cut(s) | 574, 2250 |
| XmnI | GAANNNNTTC | 5 cut(s) | 704, 876, 1086, 1227, 1368 |
| XspI | CTAG | 5 cut(s) | 14, 104, 212, 1400, 2028 |
| Zsp2I | ATGCAT | 1 cut(s) | 245 |