Rmu_sc0011709.1_g000006

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011709.1
OG0000067
Physical Location & Seq
Reverse (-)
33264 .. 40947
7684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011709.1_g000006.1.cds

Sequence Viewer

Length: 4404 bp
atggctgcttcttcatctctttcatctggtggccgttggaactatgatgtgttcctcagttttagaggtcaggacactcgcaagatctttgtaggccatctccacaaagctcttgatctgaaagcaatcaacgcattcatagactctgaagatctctgcaaaggcaacgacctttcagaattgctcagggctattgaagactctaggctttctatcgtagttttctcgcaacattatgcttcttccacatggtgtttgaaagaactggttaagatacttgaatgcgtggctgtgaagaagcagctagtggtgcccattttctatgaagtagatccatctgatatccgcaaactgaagggaagctttgccgaggcttttgcgaaacatgagcaggattctaatcccgacatggaagaggtgaataggtggaagattgctctaactgaagccagcaatctatctggatgggattcacgaaattacgcggatgacgctaagtttattgaaaaaattgtagaagatatttctgaaaaattggtccacatctcatctaataaagtcaatgacttggttggaatggattcccacgtagaaaaaatgtgttcgctattatgtcttggtgaggatgatgttcgtgttgttggagtatgtggaatgcctggtataggaaaaacaaccattgctagagctgtttatgacgaaattgtttgtcaatttgaacactattgctttcttgaaaatgtcaaggatggtttcaagaacaatggtgcaatacagatgcaggaagaactcctatctagaatatttgagaaaagagtgcgctgtctaggcactttgagtaagggatccaagatgataatggaaaggctgagtaagaaaaaagttctgcttgttcttgatgatgtagaaaacttcgcacaaattgaagcgttacttggaaaccagcattcatttggtggtggaagtagaatcattgtaaccactagagatatacaatcactcagtggagttgatgcgagatatagtcccatgtttctaagtgatgatgaagctcttgagctctttatgcagtatgccttcagaacaaaccaaccttcaagagagtatgatcctctctctaggcgtgccatagaatatgctcatggtctgcctctagcactcaaagttttgggagcttttcttgataacaaaagtatatgtgagtggaaagatgagctagagaaaataaaggaaatcccacatgtagaaattcagggtgtgcttaaaaaaagttttgatggcctggatccttcacagaaggacatattcctagatattgcatgcttctttagaggaatggacaaaggctatgtcaccaaaattctggaaagttgtggcttctatccccatagtggattgcgagtgctaattgatagagctcttgtaactatttcagatgacaataggttggaaatgcatgatttaataaaggatatgggttgggagattatccgccaacagtctattaaagagcctgggaagcgcagtaggttgtgggtttatgaagatgttgctcgtgtattaactcaaaatatggctacagatgcagttgaatgcataatgctagacttgtcgaagtcaaaagacgtctacatagatgctgaagcttttgttagaatgacgaaattaagactgctcagaattggttataaccactccacagacttgaatgcaaaagattttcaatcgaatcagttggaccatccaagaggtgagtgtaaacaacatgtaagcggggacgtaaagtttctttctcatgacttgaggtatctaatgtggtatggatgccccctgaagtctttgccatccaattttcacccgaagaatcttgttgaccttgacatgcgttgtagccatattgaacaactttgggaagaaatcaagcccttcaaaaagttgaaattcatcaatttgagtcattctcattaccttaccacaactcccaacttcactgaagcaacaaatgttgaaacactagttcttgaaggttgttcgagtttacttgatgttaactcaaccatttcagctcttaaaaaccttgtattcttgtgtctaagagggtgcaaagaacttaagagtcttccaagcagcatttgtttgaagtctcttaaaacccttgatctttctggctgctcaagtctcgtaaagtttccagagatttcagggatcatggaggacctatcagaaatttatttaaatgatactgcaattgaagaattgccatcatcaattgaacgacttcaggggcttgtattactacatttgagaaactgtagaagccttgtccatcttccagacaatatatgtaagttggtatatcttaaagatctcactatctctgggtgctcaaagctctatcatttgcctgagaacttgggtaatttagaatctttgatatgccttgaagtagaaggaagcggtataagagaactcccagtttctatcttatgcttgaaaaggctgaaaacattatcatgtgatggatgcagagaaatgacgatgcccttttcatcatggtcatcatcaattgaagaatataattgtagatactctggcctgctacatcttgatttaagtgacagtaatctgtgggaattatcggatggtattgctcaattgtcctcattgaaaaccttagagctgcgcggaaccaacttggagagcttacctgcaacgatgaatcaactgcgctgtttgacgcgtcttgaattggaagcttgcaagagactgaaatcagtaccagagcttccatcaactataaattacatagatgctcatgactgcagcgcattggaaaccgttgcaaaaccaaatactcgttgctctatgaatctttgcttcacattttctaattgcctccaactggtacaaacgaatctattcagagatattgtggaaactcattctcattaccagggtaattatcaacgtccactttcccttaatatgtctcttcccggaagtgaaattcctgattggttcaattatcaatgtaggggatcctcactaactgtacagctacccccaaattggttcgatgataagtttttggggttcgctatatgtgctgttagcgacttcaagggttctcagaatgatgcatctgatctatccgctctatgtcattgtggcttaaaaggaaatcatggtgagagcagtttcagttttactttgcttgattggggtttcactactgacagaatcctcgaggcggatcatatgttcctggcatatgtgccatggtctgaatatcgcttcactgaagagggaaagctggtcaatgaacggtatttcactgaggccacatttgagattgtagtagaaaatagagttgatagacatgttttcgggacagtaatgaaccgccattgcatcactagttgtggagttcgtttctttcatagtaattacatggaggagcataatgtaagcatcacggaaaccaaatctcatcatgacagctgtgacatcctttccgtcagtaggacaggaaaggagggcgctggggtgcagttggaggagtctctggcactggtgatgcttcctggggtagaagcattctcgaggtgggaatggccccagaaagtggaccggagctctgccagcgagagcaagaagaggccaggtttgaaggatcagagcaattcctacaagagaagaaagaattcagagtcatggacagtggtctcacctgaactaactgacgatggtcaggcttggagaaaatatggccagaagatgattctgaattctcgacatcctagatgttacttcaggtgtacccacaagtatgatcagggttgcaacgcaaccaaacatgttcaacaactccaagacaccatgtacaaaaccacctattatggaaaccacacatgcagagacataatcaagggtccacagcttatcatgggcgcctccgagtctcgtaaatattggtggatacctaatcatcaaactactgttagctcagaagctggaagaaacaaagtaaaagagttcgaatcaggtgatcatcgactacgaggtttatgcctagttttcaaattcaagagtcgaatccacaacgacaaaggtagtttatggcctctttcttcgattgatccatcgcttaatatcatcaaatcctcaagtcttcggtcggaatctataccaggagttccctcctctgctgtggcaagttgtgacaaacctattcaagttggtgcatttgtgcagggtgcagtcccaagaatgctaaagttgctacaggggcggttgtacgtgatagagaagacattgtacaattatttgctaaatcccaagaaggagaaagatctgttgcagttcagaccaagagagacgagagcaataatttgttttcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

1467

Amino Acids

166.64

Weight (kDa)

6.49

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1689
AatII GACGTC 1 cut(s) 1629
AbsI CCTCGAGG 1 cut(s) 3245
Acc36I ACCTGC 1 cut(s) 2716
AccB1I GGYRCC 2 cut(s) 310, 3950
AccB7I CCANNNNNTGG 1 cut(s) 3625
AccBSI CCGCTC 1 cut(s) 3155
AccI GTMKAC 1 cut(s) 1629
AccII CGCG 3 cut(s) 485, 2685, 2740
AcoI YGGCCR 2 cut(s) 31, 3769
AcsI RAATTY 8 cut(s) 1248, 1359, 1940, 2226, 3006, 3703, 3787, 4082
AcyI GRCGYC 2 cut(s) 1626, 3951
AdeI CACNNNGTG 2 cut(s) 252, 1004
AfaI GTAC 7 cut(s) 2778, 2907, 3054, 3820, 3884, 4298, 4319
AfiI CCNNNNNNNGG 7 cut(s) 665, 1391, 2902, 3069, 3250, 3522, 3625
AflII CTTAAG 1 cut(s) 2111
AflIII ACRYGT 5 cut(s) 1240, 1765, 2738, 3379, 3856
AhlI ACTAGT 2 cut(s) 2014, 3416
AjnI CCWGG 8 cut(s) 658, 1281, 1513, 2952, 3264, 3583, 3661, 4189
AjuI GAANNNNNNNTTGG 2 cut(s) 918, 950
AloI GAACNNNNNNTCC 2 cut(s) 3245, 3277
Alw21I GWGCWC 4 cut(s) 1062, 1420, 2387, 3638
Alw26I GTCTC 9 cut(s) 2148, 2183, 2758, 2994, 3567, 3730, 3912, 3966, 4370
AlwNI CAGNNNCTG 1 cut(s) 4013
Ama87I CYCGRG 2 cut(s) 3245, 3601
AoxI GGCC 9 cut(s) 31, 94, 1279, 2593, 3339, 3614, 3659, 3769, 4121
ApeKI GCWGC 6 cut(s) 5, 301, 2127, 2169, 2680, 2823
ApoI RAATTY 8 cut(s) 1248, 1359, 1940, 2226, 3006, 3703, 3787, 4082
ArsI GACNNNNNNTTYG 2 cut(s) 1335, 1367
Asp700I GAANNNNTTC 4 cut(s) 580, 2277, 2918, 3703
AspLEI GCGC 7 cut(s) 822, 1524, 2685, 2730, 2828, 3542, 3953
AspS9I GGNCC 6 cut(s) 538, 1738, 2215, 3615, 3628, 3932
AsuC2I CCSGG 1 cut(s) 2997
AsuHPI GGTGA 9 cut(s) 430, 632, 1345, 1763, 1847, 3200, 3586, 3720, 4058
AsuII TTCGAA 1 cut(s) 4038
AvaI CYCGRG 2 cut(s) 3245, 3601
AvaII GGWCC 5 cut(s) 538, 1738, 2215, 3628, 3932
BaeGI GKGCMC 1 cut(s) 315
BalI TGGCCA 1 cut(s) 3771
BamHI GGATCC 3 cut(s) 845, 1285, 3038
BanI GGYRCC 2 cut(s) 310, 3950
BanII GRGCYC 3 cut(s) 1062, 1420, 3638
BarI GAAGNNNNNNTAC 4 cut(s) 2769, 2801, 4301, 4333
BauI CACGAG 1 cut(s) 1554
BbsI GAAGAC 4 cut(s) 204, 2111, 4163, 4316
Bbv12I GWGCWC 4 cut(s) 1062, 1420, 2387, 3638
BbvI GCAGC 5 cut(s) 313, 2139, 2156, 2667, 2835
BceAI ACGGC 1 cut(s) 18
BcgI CGANNNNNNTGC 4 cut(s) 359, 393, 4050, 4084
BciT130I CCWGG 8 cut(s) 660, 1283, 1515, 2954, 3266, 3585, 3663, 4191
BciVI GTATCC 1 cut(s) 3972
BclI TGATCA 2 cut(s) 3832, 4048
BcnI CCSGG 1 cut(s) 2997
BcoDI GTCTC 9 cut(s) 2148, 2183, 2758, 2994, 3567, 3730, 3912, 3966, 4370
BcuI ACTAGT 2 cut(s) 2014, 3416
BfmI CTRYAG 4 cut(s) 1578, 2311, 2821, 4283
BfoI RGCGCY 2 cut(s) 3543, 3954
BfrI CTTAAG 1 cut(s) 2111
BfuAI ACCTGC 1 cut(s) 2716
BfuI GTATCC 1 cut(s) 3972
BglII AGATCT 4 cut(s) 84, 151, 2365, 4351
BisI GCNGC 6 cut(s) 6, 302, 2128, 2170, 2681, 2824
BlsI GCNGC 6 cut(s) 7, 303, 2129, 2171, 2682, 2825
Bme1390I CCNGG 9 cut(s) 660, 1283, 1515, 2954, 2997, 3266, 3585, 3663, 4191
Bme18I GGWCC 5 cut(s) 538, 1738, 2215, 3628, 3932
BmeT110I CYCGRG 2 cut(s) 3245, 3601
BmgT120I GGNCC 6 cut(s) 538, 1738, 2215, 3615, 3628, 3932
BmiI GGNNCC 8 cut(s) 312, 847, 1287, 2689, 3040, 3617, 3933, 3952
BmrFI CCNGG 9 cut(s) 660, 1283, 1515, 2954, 2997, 3266, 3585, 3663, 4191
BmrI ACTGGG 1 cut(s) 2468
BmuI ACTGGG 1 cut(s) 2468
BoxI GACNNNNGTC 2 cut(s) 3722, 3747
BpiI GAAGAC 4 cut(s) 204, 2111, 4163, 4316
BplI GAGNNNNNCTC 2 cut(s) 1945, 1977
Bpu10I CCTNAGC 1 cut(s) 185
Bpu14I TTCGAA 1 cut(s) 4038
BpuEI CTTGAG 4 cut(s) 1076, 1822, 2158, 4150
BpuMI CCSGG 1 cut(s) 2997
BsaAI YACGTR 2 cut(s) 589, 4300
BsaBI GATNNNNATC 1 cut(s) 399
BsaHI GRCGYC 2 cut(s) 1626, 3951
BsaI GGTCTC 1 cut(s) 3730
BsaJI CCNNGG 5 cut(s) 369, 1514, 2953, 3278, 3584
BsaWI WCCGGW 1 cut(s) 3630
BsaXI ACNNNNNCTCC 2 cut(s) 1963, 1993
Bsc4I CCNNNNNNNGG 7 cut(s) 665, 1391, 2902, 3069, 3250, 3522, 3625
Bse1I ACTGG 4 cut(s) 270, 2474, 2907, 3576
Bse3DI GCAATG 2 cut(s) 678, 3406
Bse8I GATNNNNATC 1 cut(s) 399
BseBI CCWGG 8 cut(s) 660, 1283, 1515, 2954, 3266, 3585, 3663, 4191
BseDI CCNNGG 5 cut(s) 369, 1514, 2953, 3278, 3584
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 7 cut(s) 665, 1391, 2902, 3069, 3250, 3522, 3625
BseMI GCAATG 2 cut(s) 678, 3406
BseMII CTCAG 9 cut(s) 70, 199, 860, 1015, 1690, 2397, 3143, 3327, 4020
BseNI ACTGG 4 cut(s) 270, 2474, 2907, 3576
BseRI GAGGAG 3 cut(s) 3470, 3572, 4192
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 5 cut(s) 313, 2139, 2156, 2667, 2835
BseYI CCCAGC 1 cut(s) 3542
BsgI GTGCAG 3 cut(s) 3569, 4271, 4278
Bsh1236I CGCG 3 cut(s) 485, 2685, 2740
Bsh1285I CGRYCG 1 cut(s) 4178
BshFI GGCC 9 cut(s) 33, 96, 1281, 2595, 3341, 3616, 3661, 3771, 4123
BshNI GGYRCC 2 cut(s) 310, 3950
BsiEI CGRYCG 1 cut(s) 4178
BsiHKAI GWGCWC 4 cut(s) 1062, 1420, 2387, 3638
BsiHKCI CYCGRG 2 cut(s) 3245, 3601
BsiSI CCGG 2 cut(s) 2997, 3631
BslFI GGGAC 4 cut(s) 1011, 1790, 3403, 4247
BslI CCNNNNNNNGG 7 cut(s) 665, 1391, 2902, 3069, 3250, 3522, 3625
BsmAI GTCTC 9 cut(s) 2148, 2183, 2758, 2994, 3567, 3730, 3912, 3966, 4370
BsmBI CGTCTC 1 cut(s) 4370
BsmFI GGGAC 4 cut(s) 1011, 1790, 3403, 4247
BsmI GAATGC 8 cut(s) 134, 287, 660, 946, 1598, 1714, 3596, 4275
BsnI GGCC 9 cut(s) 33, 96, 1281, 2595, 3341, 3616, 3661, 3771, 4123
Bso31I GGTCTC 1 cut(s) 3730
BsoBI CYCGRG 2 cut(s) 3245, 3601
Bsp119I TTCGAA 1 cut(s) 4038
Bsp1286I GDGCHC 5 cut(s) 315, 1062, 1420, 2387, 3638
Bsp1407I TGTACA 3 cut(s) 3052, 3882, 4317
Bsp19I CCATGG 1 cut(s) 3278
BspANI GGCC 9 cut(s) 33, 96, 1281, 2595, 3341, 3616, 3661, 3771, 4123
BspCNI CTCAG 9 cut(s) 69, 198, 861, 1014, 1689, 2398, 3142, 3328, 4019
BspFNI CGCG 3 cut(s) 485, 2685, 2740
BspHI TCATGA 3 cut(s) 1795, 2815, 3493
BspLI GGNNCC 8 cut(s) 312, 847, 1287, 2689, 3040, 3617, 3933, 3952
BspMAI CTGCAG 1 cut(s) 2825
BspMI ACCTGC 1 cut(s) 2716
BspT104I TTCGAA 1 cut(s) 4038
BspT107I GGYRCC 2 cut(s) 310, 3950
BspTI CTTAAG 1 cut(s) 2111
BspTNI GGTCTC 1 cut(s) 3730
BsrBI CCGCTC 1 cut(s) 3155
BsrDI GCAATG 2 cut(s) 678, 3406
BsrGI TGTACA 3 cut(s) 3052, 3882, 4317
BsrI ACTGG 4 cut(s) 270, 2474, 2907, 3576
BssECI CCNNGG 5 cut(s) 369, 1514, 2953, 3278, 3584
BssNI GRCGYC 2 cut(s) 1626, 3951
BssSI CACGAG 1 cut(s) 1554
BssT1I CCWWGG 1 cut(s) 3278
Bst2BI CACGAG 1 cut(s) 1554
Bst2UI CCWGG 8 cut(s) 660, 1283, 1515, 2954, 3266, 3585, 3663, 4191
Bst4CI ACNGT 9 cut(s) 1500, 2312, 2621, 2839, 3052, 3327, 3394, 3721, 4000
Bst6I CTCTTC 4 cut(s) 408, 2997, 3297, 3650
BstACI GRCGYC 2 cut(s) 1626, 3951
BstAFI CTTAAG 1 cut(s) 2111
BstAUI TGTACA 3 cut(s) 3052, 3882, 4317
BstBAI YACGTR 2 cut(s) 589, 4300
BstBI TTCGAA 1 cut(s) 4038
BstC8I GCNNGC 6 cut(s) 451, 1125, 1321, 2597, 2758, 3643
BstDSI CCRYGG 1 cut(s) 3278
BstENI CCTNNNNNAGG 1 cut(s) 663
BstFNI CGCG 3 cut(s) 485, 2685, 2740
BstH2I RGCGCY 2 cut(s) 3543, 3954
BstHHI GCGC 7 cut(s) 822, 1524, 2685, 2730, 2828, 3542, 3953
BstMAI GTCTC 9 cut(s) 2148, 2183, 2758, 2994, 3567, 3730, 3912, 3966, 4370
BstMCI CGRYCG 1 cut(s) 4178
BstNI CCWGG 8 cut(s) 660, 1283, 1515, 2954, 3266, 3585, 3663, 4191
BstNSI RCATGY 7 cut(s) 1244, 1323, 1769, 1885, 3383, 3860, 3915
BstPAI GACNNNNGTC 2 cut(s) 3722, 3747
BstSCI CCNGG 9 cut(s) 658, 1281, 1513, 2952, 2995, 3264, 3583, 3661, 4189
BstSFI CTRYAG 4 cut(s) 1578, 2311, 2821, 4283
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 3 cut(s) 485, 2685, 2740
BstV1I GCAGC 5 cut(s) 313, 2139, 2156, 2667, 2835
BstV2I GAAGAC 4 cut(s) 204, 2111, 4163, 4316
BstX2I RGATCY 8 cut(s) 84, 151, 331, 845, 1285, 2365, 3038, 4351
BstXI CCANNNNNNTGG 1 cut(s) 1363
BstYI RGATCY 8 cut(s) 84, 151, 331, 845, 1285, 2365, 3038, 4351
BsuI GTATCC 1 cut(s) 3972
BsuRI GGCC 9 cut(s) 33, 96, 1281, 2595, 3341, 3616, 3661, 3771, 4123
BtgI CCRYGG 1 cut(s) 3278
BtgZI GCGATG 1 cut(s) 4128
BtsIMutI CAGTG 6 cut(s) 1009, 1989, 3297, 3333, 3569, 3726
BveI ACCTGC 1 cut(s) 2716
Cac8I GCNNGC 6 cut(s) 451, 1125, 1321, 2597, 2758, 3643
CaiI CAGNNNCTG 1 cut(s) 4013
CciI TCATGA 3 cut(s) 1795, 2815, 3493
CfoI GCGC 7 cut(s) 822, 1524, 2685, 2730, 2828, 3542, 3953
Cfr13I GGNCC 6 cut(s) 538, 1738, 2215, 3615, 3628, 3932
CseI GACGC 3 cut(s) 500, 2729, 2746
Csp6I GTAC 7 cut(s) 2777, 2906, 3053, 3819, 3883, 4297, 4318
CviQI GTAC 7 cut(s) 2777, 2906, 3053, 3819, 3883, 4297, 4318
DinI GGCGCC 1 cut(s) 3952
DraI TTTAAA 1 cut(s) 2235
DraIII CACNNNGTG 2 cut(s) 252, 1004
EaeI YGGCCR 2 cut(s) 31, 3769
Eam1104I CTCTTC 4 cut(s) 408, 2997, 3297, 3650
EarI CTCTTC 4 cut(s) 408, 2997, 3297, 3650
EciI GGCGGA 2 cut(s) 1481, 3266
Ecl136II GAGCTC 3 cut(s) 1060, 1418, 3636
Eco130I CCWWGG 1 cut(s) 3278
Eco24I GRGCYC 3 cut(s) 1062, 1420, 3638
Eco31I GGTCTC 1 cut(s) 3730
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 5 cut(s) 538, 1738, 2215, 3628, 3932
Eco53kI GAGCTC 3 cut(s) 1060, 1418, 3636
Eco88I CYCGRG 2 cut(s) 3245, 3601
EcoICRI GAGCTC 3 cut(s) 1060, 1418, 3636
EcoNI CCTNNNNNAGG 1 cut(s) 663
EcoO109I RGGNCCY 1 cut(s) 2215
EcoRI GAATTC 2 cut(s) 3703, 3787
EcoRII CCWGG 8 cut(s) 658, 1281, 1513, 2952, 3264, 3583, 3661, 4189
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 3278
EcoT22I ATGCAT 3 cut(s) 1458, 1598, 3142
EcoT38I GRGCYC 3 cut(s) 1062, 1420, 3638
EgeI GGCGCC 1 cut(s) 3952
EheI GGCGCC 1 cut(s) 3952
ErhI CCWWGG 1 cut(s) 3278
Esp3I CGTCTC 1 cut(s) 4370
FalI AAGNNNNNCTT 6 cut(s) 347, 379, 873, 905, 918, 950
FaqI GGGAC 4 cut(s) 1011, 1790, 3403, 4247
FauI CCCGC 1 cut(s) 1766
FauNDI CATATG 2 cut(s) 3258, 3271
FbaI TGATCA 2 cut(s) 3832, 4048
FblI GTMKAC 1 cut(s) 1629
Fnu4HI GCNGC 6 cut(s) 6, 302, 2128, 2170, 2681, 2824
FriOI GRGCYC 3 cut(s) 1062, 1420, 3638
Fsp4HI GCNGC 6 cut(s) 6, 302, 2128, 2170, 2681, 2824
GlaI GCGC 7 cut(s) 821, 1523, 2684, 2729, 2827, 3541, 3952
GluI GCNGC 6 cut(s) 6, 302, 2128, 2170, 2681, 2824
GsaI CCCAGC 1 cut(s) 3546
HaeII RGCGCY 2 cut(s) 3543, 3954
HaeIII GGCC 9 cut(s) 33, 96, 1281, 2595, 3341, 3616, 3661, 3771, 4123
HapII CCGG 2 cut(s) 2997, 3631
HgaI GACGC 3 cut(s) 500, 2729, 2746
HhaI GCGC 7 cut(s) 822, 1524, 2685, 2730, 2828, 3542, 3953
Hin1I GRCGYC 2 cut(s) 1626, 3951
Hin6I GCGC 7 cut(s) 820, 1522, 2683, 2728, 2826, 3540, 3951
HinP1I GCGC 7 cut(s) 820, 1522, 2683, 2728, 2826, 3540, 3951
HincII GTYRAC 2 cut(s) 1873, 2050
HindII GTYRAC 2 cut(s) 1873, 2050
HindIII AAGCTT 3 cut(s) 361, 1644, 2754
HpaI GTTAAC 1 cut(s) 2050
HpaII CCGG 2 cut(s) 2997, 3631
HphI GGTGA 9 cut(s) 430, 632, 1345, 1763, 1847, 3200, 3586, 3720, 4058
HpyCH4III ACNGT 9 cut(s) 1500, 2312, 2621, 2839, 3052, 3327, 3394, 3721, 4000
HpyCH4IV ACGT 5 cut(s) 588, 1626, 1779, 2968, 4299
HpySE526I ACGT 5 cut(s) 588, 1626, 1779, 2968, 4299
Hsp92I GRCGYC 2 cut(s) 1626, 3951
HspAI GCGC 7 cut(s) 820, 1522, 2683, 2728, 2826, 3540, 3951
KasI GGCGCC 1 cut(s) 3950
Ksp22I TGATCA 2 cut(s) 3832, 4048
KspAI GTTAAC 1 cut(s) 2050
LmnI GCTCC 3 cut(s) 1172, 3457, 3633
Lsp1109I GCAGC 5 cut(s) 313, 2139, 2156, 2667, 2835
MaeII ACGT 5 cut(s) 588, 1626, 1779, 2968, 4299
MaeIII GTNAC 8 cut(s) 930, 976, 1351, 1423, 2615, 3503, 3806, 4220
MbiI CCGCTC 1 cut(s) 3155
MfeI CAATTG 4 cut(s) 2247, 2268, 2565, 2654
MflI RGATCY 8 cut(s) 84, 151, 331, 845, 1285, 2365, 3038, 4351
MhlI GDGCHC 5 cut(s) 315, 1062, 1420, 2387, 3638
MlsI TGGCCA 1 cut(s) 3771
MluI ACGCGT 1 cut(s) 2738
MluNI TGGCCA 1 cut(s) 3771
Mly113I GGCGCC 1 cut(s) 3951
MlyI GAGTC 8 cut(s) 137, 194, 1963, 2125, 3569, 3719, 3968, 4099
MmeI TCCRAC 8 cut(s) 17, 553, 622, 1428, 1716, 2923, 3534, 4158
Mox20I TGGCCA 1 cut(s) 3771
Mph1103I ATGCAT 3 cut(s) 1458, 1598, 3142
MroXI GAANNNNTTC 4 cut(s) 580, 2277, 2918, 3703
MscI TGGCCA 1 cut(s) 3771
MslI CAYNNNNRTG 2 cut(s) 2512, 3828
Msp20I TGGCCA 1 cut(s) 3771
MspA1I CMGCKG 1 cut(s) 3501
MspCI CTTAAG 1 cut(s) 2111
MspI CCGG 2 cut(s) 2997, 3631
MspR9I CCNGG 9 cut(s) 660, 1283, 1515, 2954, 2997, 3266, 3585, 3663, 4191
MunI CAATTG 4 cut(s) 2247, 2268, 2565, 2654
Mva1269I GAATGC 8 cut(s) 134, 287, 660, 946, 1598, 1714, 3596, 4275
MvaI CCWGG 8 cut(s) 660, 1283, 1515, 2954, 3266, 3585, 3663, 4191
MvnI CGCG 3 cut(s) 485, 2685, 2740
NarI GGCGCC 1 cut(s) 3951
NciI CCSGG 1 cut(s) 2997
NcoI CCATGG 1 cut(s) 3278
NdeI CATATG 2 cut(s) 3258, 3271
NlaIV GGNNCC 8 cut(s) 312, 847, 1287, 2689, 3040, 3617, 3933, 3952
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 4 cut(s) 1351, 2615, 3503, 4220
NsiI ATGCAT 3 cut(s) 1458, 1598, 3142
NspI RCATGY 7 cut(s) 1244, 1323, 1769, 1885, 3383, 3860, 3915
NspV TTCGAA 1 cut(s) 4038
PaeI GCATGC 1 cut(s) 1323
PaeR7I CTCGAG 2 cut(s) 3245, 3601
PagI TCATGA 3 cut(s) 1795, 2815, 3493
PciI ACATGT 4 cut(s) 1240, 1765, 3379, 3856
PctI GAATGC 8 cut(s) 134, 287, 660, 946, 1598, 1714, 3596, 4275
PdmI GAANNNNTTC 4 cut(s) 580, 2277, 2918, 3703
PflMI CCANNNNNTGG 1 cut(s) 3625
PfoI TCCNGGA 1 cut(s) 2995
PkrI GCNGC 6 cut(s) 7, 303, 2129, 2171, 2682, 2825
PleI GAGTC 8 cut(s) 137, 194, 1962, 2124, 3568, 3718, 3967, 4098
PluTI GGCGCC 1 cut(s) 3954
PpsI GAGTC 8 cut(s) 137, 194, 1962, 2124, 3568, 3718, 3967, 4098
Ppu21I YACGTR 2 cut(s) 589, 4300
PpuMI RGGWCCY 1 cut(s) 2215
PscI ACATGT 4 cut(s) 1240, 1765, 3379, 3856
PshAI GACNNNNGTC 2 cut(s) 3722, 3747
PsiI TTATAA 1 cut(s) 1689
Psp124BI GAGCTC 3 cut(s) 1062, 1420, 3638
Psp5II RGGWCCY 1 cut(s) 2215
Psp6I CCWGG 8 cut(s) 658, 1281, 1513, 2952, 3264, 3583, 3661, 4189
PspFI CCCAGC 1 cut(s) 3542
PspGI CCWGG 8 cut(s) 658, 1281, 1513, 2952, 3264, 3583, 3661, 4189
PspN4I GGNNCC 8 cut(s) 312, 847, 1287, 2689, 3040, 3617, 3933, 3952
PspPI GGNCC 6 cut(s) 538, 1738, 2215, 3615, 3628, 3932
PspPPI RGGWCCY 1 cut(s) 2215
PspXI VCTCGAGB 1 cut(s) 3245
PstI CTGCAG 1 cut(s) 2825
PstNI CAGNNNCTG 1 cut(s) 4013
PsuI RGATCY 8 cut(s) 84, 151, 331, 845, 1285, 2365, 3038, 4351
PvuII CAGCTG 1 cut(s) 3501
RsaI GTAC 7 cut(s) 2778, 2907, 3054, 3820, 3884, 4298, 4319
RsaNI GTAC 7 cut(s) 2777, 2906, 3053, 3819, 3883, 4297, 4318
RseI CAYNNNNRTG 2 cut(s) 2512, 3828
SacI GAGCTC 3 cut(s) 1062, 1420, 3638
SatI GCNGC 6 cut(s) 6, 302, 2128, 2170, 2681, 2824
Sau96I GGNCC 6 cut(s) 538, 1738, 2215, 3615, 3628, 3932
SchI GAGTC 8 cut(s) 137, 194, 1963, 2125, 3569, 3719, 3968, 4099
ScrFI CCNGG 9 cut(s) 660, 1283, 1515, 2954, 2997, 3266, 3585, 3663, 4191
SduI GDGCHC 5 cut(s) 315, 1062, 1420, 2387, 3638
SfcI CTRYAG 4 cut(s) 1578, 2311, 2821, 4283
SfoI GGCGCC 1 cut(s) 3952
Sfr274I CTCGAG 2 cut(s) 3245, 3601
SfuI TTCGAA 1 cut(s) 4038
SinI GGWCC 5 cut(s) 538, 1738, 2215, 3628, 3932
SlaI CTCGAG 2 cut(s) 3245, 3601
SmiI ATTTAAAT 1 cut(s) 2235
SmiMI CAYNNNNRTG 2 cut(s) 2512, 3828
SmlI CTYRAG 7 cut(s) 1055, 1801, 2111, 2173, 3245, 3601, 4165
SmoI CTYRAG 7 cut(s) 1055, 1801, 2111, 2173, 3245, 3601, 4165
SpeI ACTAGT 2 cut(s) 2014, 3416
SphI GCATGC 1 cut(s) 1323
SspDI GGCGCC 1 cut(s) 3950
SspI AATATT 2 cut(s) 804, 3971
SstI GAGCTC 3 cut(s) 1062, 1420, 3638
StyD4I CCNGG 9 cut(s) 658, 1281, 1513, 2952, 2995, 3264, 3583, 3661, 4189
StyI CCWWGG 1 cut(s) 3278
SwaI ATTTAAAT 1 cut(s) 2235
TaaI ACNGT 9 cut(s) 1500, 2312, 2621, 2839, 3052, 3327, 3394, 3721, 4000
TaiI ACGT 5 cut(s) 591, 1629, 1782, 2971, 4302
TaqII GACCGA 1 cut(s) 4164
TatI WGTACW 3 cut(s) 3052, 3882, 4317
TscAI CASTG 6 cut(s) 1009, 1996, 3304, 3340, 3576, 3726
TseFI GTSAC 4 cut(s) 1351, 2615, 3503, 4220
TseI GCWGC 6 cut(s) 5, 301, 2127, 2169, 2680, 2823
Tsp45I GTSAC 4 cut(s) 1351, 2615, 3503, 4220
TspGWI ACGGA 2 cut(s) 3491, 3505
TspRI CASTG 6 cut(s) 1009, 1996, 3304, 3340, 3576, 3726
Van91I CCANNNNNTGG 1 cut(s) 3625
Vha464I CTTAAG 1 cut(s) 2111
VpaK11BI GGWCC 5 cut(s) 538, 1738, 2215, 3628, 3932
XagI CCTNNNNNAGG 1 cut(s) 663
XapI RAATTY 8 cut(s) 1248, 1359, 1940, 2226, 3006, 3703, 3787, 4082
XbaI TCTAGA 1 cut(s) 797
XceI RCATGY 7 cut(s) 1244, 1323, 1769, 1885, 3383, 3860, 3915
XcmI CCANNNNNNNNNTGG 2 cut(s) 856, 950
XhoI CTCGAG 2 cut(s) 3245, 3601
XmiI GTMKAC 1 cut(s) 1629
XmnI GAANNNNTTC 4 cut(s) 580, 2277, 2918, 3703
ZraI GACGTC 1 cut(s) 1627
Zsp2I ATGCAT 3 cut(s) 1458, 1598, 3142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.