Rroxscaffold_4G00305990

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000067
Physical Location & Seq
Forward (+)
26787222 .. 26789757
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00305990.1

Sequence Viewer

Length: 1251 bp
ATGACGGCGCCCTTTTCCTCGTGGCCAACATGGAACCACCAAAATCCTAGTTACTCTATTCTCACCGATCTTGATTTAAGTGACTGCAATCTCTTGGAATTATCGGATGGTATTGCTCATTTATCTTCATTGCAAGAATTAAGGCTGTACAGAAACGAGAATTTGGAAAGTTTACCTGCAGCAATGAATCGCCTGGGTCATTTAACACGGCTCTATCTGAGAGGTTGCAAGAGACTGAAATCAATACCAGAGCTTTCATCGAGTATACAAGAAATCGATGCCCAAGATTGCACATCTTTGGAGACAGTTTCAACACCACAGCCTCCGTACGCTGAGGACATTCGCTTCCAATTTTTTAATTGCTTCAAGTTGGTGATCAATACCAATATATTTATAGATATTGTGGAAAGTGCTACTGATAATCAGGATTATGAATGTCGTTACCATATGACTATGTCTCTTCCTGGAAGTGATATTCCAGATTGGTTCAACCATCAGAGTAGAGGGTCTTCCGTAACTGTGCAGTTACCGCCCAATTGGCTCGCAAACAACTTTCTGGGGTTCGCTATATGCGCCATCGGTAATTTGCGGGGTGCTGCAAATAGACAAACACTTGAAAGCAAATGTTATTGTACCTTAAAAGCAAATGATGGTCAGGACAATTTCTATTTTCATTTGCTCCTCCCTTTTCGAGGTGGAACTGACATGCCCCTTGAGTTGGATCATATGTTCATGGGATATACAAATCTCCGAAGTATAGGAATGCGGTCCTATAAACGCAAATACACCGAGGCTAGATTTAGGATAGTGGCAGCGGACTATGAAGATTGCACTTGGATCACAAGTTGCGGGGTTCGGTTATTCCACAAGTATCCACCATTCTCTGAGGACGTTATTTGCAATTTGGAAAATAGAGAAACAGAGATAAGGAGTAAGAGAAAGAGAGAGACACCAGAAAGAGGGAAAGAGAAGATGGGGGTGGAGGTGCAAGAAGAGGGGGAGGAGTGCTCGGGAGTAGGAATGAGCAAACGGGGAATTCCCCCGCCCCGCGCTCCTCGCCCCCGCTTCCAAATTCCCCCGCGCCCCCGTTCCCCGTCCGGGGATATTATCGATGGGGGATTCCCCGCCTGCTGCCCCCGCGGAAAGAAACAAAGAGAAAGAGAAGCAGAGGGTGTTGCTGGAGCCACAGGATTAGAGTCAGAGGAAGCGGATGTCTCAGGGGATGGGGGACTCCTCACATTGTCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

416

Amino Acids

46.95

Weight (kDa)

5.64

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 21 - 76 9.8e-07 Leucine rich repeat
LRR_14 PF23598 24 - 93 3e-06 Leucine-rich repeat region
C-JID PF20160 154 - 291 7.5e-23 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01690 FvH4_6g01690 FvH4_7g11151 FvH4_7g11160 FvH4_7g11570 FvH4_7g17700 FvH4_7g26071 FvH4_7g28510 FvH4_7g28520 FvH4_7g28530 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28540 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550 FvH4_7g28550
malus_domestica MD00G1020300.v1.1 MD00G1020400.v1.1 MD00G1020500.v1.1 MD00G1020700.v1.1 MD00G1021100.v1.1 MD00G1131100.v1.1 MD01G1188900.v1.1 MD01G1189000.v1.1 MD01G1189200.v1.1 MD01G1190100.v1.1 MD01G1190300.v1.1 MD01G1190500.v1.1 MD01G1190700.v1.1 MD01G1191400.v1.1 MD02G1260000.v1.1 MD02G1260200.v1.1 MD02G1260400.v1.1 MD03G1202400.v1.1 MD04G1022500.v1.1 MD04G1022700.v1.1 MD04G1200400.v1.1 MD07G1015300.v1.1 MD07G1015400.v1.1 MD07G1141800.v1.1 MD07G1242100.v1.1 MD07G1242500.v1.1 MD07G1243000.v1.1 MD07G1243500.v1.1 MD07G1244000.v1.1 MD07G1244600.v1.1 MD07G1245100.v1.1 MD07G1245600.v1.1 MD07G1246000.v1.1 MD07G1246200.v1.1 MD07G1260000.v1.1 MD07G1260700.v1.1 MD07G1261100.v1.1 MD08G1229600.v1.1 MD08G1229700.v1.1 MD08G1230200.v1.1 MD09G1186700.v1.1 MD09G1186800.v1.1 MD17G1208600.v1.1
pyrus_communis pycom01g20080 pycom01g20090 pycom01g20120 pycom01g20130 pycom01g20160 pycom01g20200 pycom01g20210 pycom01g20250 pycom02g22140 pycom02g22170 pycom02g22200 pycom02g22220 pycom02g22230 pycom03g15410 pycom03g15420 pycom04g01960 pycom04g01970 pycom07g21840 pycom07g21930 pycom07g21960 pycom07g22000 pycom07g23350 pycom07g23370 pycom07g23440 pycom07g23450 pycom07g23460 pycom07g23500 pycom07g23530 pycom07g23590 pycom07g23660 pycom07g23670 pycom07g23690 pycom07g23710 pycom07g23760 pycom07g23770 pycom07g23780 pycom07g23800 pycom07g23820 pycom08g19980 pycom08g19990 pycom08g20010 pycom08g20020 pycom17g04750 pycom17g21140 pycom17g21200 pycom17g21250 pycom17g21270 pycom17g21290 pycom17g21340 pycom17g21350
rosa_chinensis RchiOBHm_Chr1g0335971 RchiOBHm_Chr1g0349181 RchiOBHm_Chr1g0349211 RchiOBHm_Chr1g0349221 RchiOBHm_Chr1g0350001 RchiOBHm_Chr1g0372491 RchiOBHm_Chr1g0372501 RchiOBHm_Chr1g0372511 RchiOBHm_Chr1g0372541 RchiOBHm_Chr1g0375911 RchiOBHm_Chr1g0375921 RchiOBHm_Chr1g0375931 RchiOBHm_Chr1g0375941 RchiOBHm_Chr1g0375951 RchiOBHm_Chr3g0454321 RchiOBHm_Chr6g0266131 RchiOBHm_Chr6g0270371 RchiOBHm_Chr6g0270381 RchiOBHm_Chr6g0270391 RchiOBHm_Chr7g0232121 RchiOBHm_Chr7g0232831
rosa_laevigata RLG00000008620 RLG00000009600 RLG00000010114 RLG00000020933 RLG00000022777 RLG00000022778 RLG00000025461 RLG00000025462 RLG00000026641 RLG00000026642 RLG00000026643 RLG00000026894 RLG00000028442 RLG00000028506 RLG00000028510 RLG00000028563 RLG00000028564 RLG00000028570 RLG00000028574 RLG00000028577 RLG00000028579 RLG00000028580 RLG00000028582 RLG00000028584 RLG00000028588 RLG00000028591 RLG00000028592 RLG00000028596
rosa_multiflora Rmu_co8179714.1_g000001 Rmu_co8285207.1_g000001 Rmu_co8469031.1_g000001 Rmu_co8499245.1_g000002 Rmu_sc0000616.1_g000011 Rmu_sc0000827.1_g000022 Rmu_sc0000827.1_g000025 Rmu_sc0000827.1_g000034 Rmu_sc0000827.1_g000036 Rmu_sc0001340.1_g000001 Rmu_sc0001909.1_g000018 Rmu_sc0002863.1_g000018 Rmu_sc0002863.1_g000031 Rmu_sc0002914.1_g000028 Rmu_sc0002914.1_g000029 Rmu_sc0002914.1_g000032 Rmu_sc0003385.1_g000001 Rmu_sc0003385.1_g000008 Rmu_sc0003385.1_g000009 Rmu_sc0003385.1_g000013 Rmu_sc0003385.1_g000015 Rmu_sc0003385.1_g000025 Rmu_sc0003441.1_g000069 Rmu_sc0003674.1_g000007 Rmu_sc0003674.1_g000011 Rmu_sc0004618.1_g000001 Rmu_sc0005410.1_g000018 Rmu_sc0006415.1_g000005 Rmu_sc0006415.1_g000006 Rmu_sc0006415.1_g000014 Rmu_sc0006415.1_g000018 Rmu_sc0009606.1_g000011 Rmu_sc0011111.1_g000006 Rmu_sc0011709.1_g000003 Rmu_sc0011709.1_g000006 Rmu_sc0014584.1_g000002 Rmu_sc0015952.1_g000001 Rmu_sc0019347.1_g000001 Rmu_sc0019347.1_g000002 Rmu_sc0019347.1_g000003 Rmu_sc0023808.1_g000001 Rmu_sc0032581.1_g000001 Rmu_sc0034725.1_g000002 Rmu_sc0035038.1_g000001 Rmu_ssc0000018.1_g000005 Rmu_ssc0000018.1_g000006 Rmu_ssc0000116.1_g000002 Rmu_ssc0000150.1_g000009 Rmu_ssc0000150.1_g000011 Rmu_ssc0000472.1_g000013
rosa_roxburghii Rroxscaffold_165G00437140 Rroxscaffold_174G00435220 Rroxscaffold_3G00228770 Rroxscaffold_3G00228780 Rroxscaffold_4G00282480 Rroxscaffold_4G00282490 Rroxscaffold_4G00282510 Rroxscaffold_4G00282520 Rroxscaffold_4G00282540 Rroxscaffold_4G00284870 Rroxscaffold_4G00295380 Rroxscaffold_4G00305140 Rroxscaffold_4G00305150 Rroxscaffold_4G00305210 Rroxscaffold_4G00305760 Rroxscaffold_4G00305810 Rroxscaffold_4G00305840 Rroxscaffold_4G00305900 Rroxscaffold_4G00305920 Rroxscaffold_4G00305960 Rroxscaffold_4G00305980 Rroxscaffold_4G00305990 Rroxscaffold_4G00306020 Rroxscaffold_4G00325020 Rroxscaffold_5G00352760 Rroxscaffold_6G00425210 Rroxscaffold_7G00201950 Rroxscaffold_7G00214940
rosa_rugosa Rorug01G0048900 Rorug01G0049000 Rorug01G0201400 Rorug01G0201700 Rorug01G0202000 Rorug01G0207700 Rorug01G0207800 Rorug01G0207900 Rorug01G0286300 Rorug01G0286400 Rorug01G0286500 Rorug01G0372500 Rorug01G0372600 Rorug01G0392300 Rorug01G0392400 Rorug01G0392500 Rorug01G0392600 Rorug01G0392700 Rorug01G0392800 Rorug01G0392800 Rorug01G0392900 Rorug01G0393000 Rorug02G0654200 Rorug02G0654200 Rorug04G0027700 Rorug05G0351300 Rorug05G0351400 Rorug05G0351600 Rorug05G0406600 Rorug07G0269500 Rorug07G0276200 Rorug07G0276200
rosa_samantha Rh1AG224200 Rh1AG229900 Rh1AG297600 Rh1AG297700 Rh1AG381000 Rh1AG404200 Rh1AG404300 Rh1AG404400 Rh1BG184300 Rh1BG367600 Rh1BG367900 Rh1BG368000 Rh1CG203700 Rh1CG208900 Rh1CG279000 Rh1CG279100 Rh1CG357900 Rh1CG380500 Rh1CG380700 Rh1CG380800 Rh1CG380900 Rh1DG214000 Rh3AG058200 Rh3BG059900 Rh6BG145500 Rh6BG292400 Rh6DG129800 Rh7AG423900 Rh7AG431300 Rh7BG249300 Rh7BG404200 Rh7CG049400 Rh7CG444300 Rh7CG450000 Rh7DG420600
rosa_wichuraiana Rw0G000410 Rw0G007570 Rw0G011870 Rw1G018580 Rw1G018590 Rw1G018610 Rw1G018620 Rw1G018640 Rw1G019140 Rw1G019150 Rw1G019260 Rw1G019900 Rw1G026290 Rw1G026300 Rw1G026870 Rw1G026890 Rw1G033510 Rw1G035810 Rw1G035830 Rw1G035840 Rw1G035850 Rw1G035860 Rw3G004460 Rw5G038750 Rw7G035060 Rw7G035610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 265
AccII CGCG 3 cut(s) 1050, 1081, 1140
AclWI GGATC 2 cut(s) 729, 845
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 3 cut(s) 160, 1035, 1071
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 3 cut(s) 149, 329, 634
AfiI CCNNNNNNNGG 5 cut(s) 692, 718, 959, 1098, 1099
AgsI TTSAA 4 cut(s) 312, 367, 490, 617
AjnI CCWGG 2 cut(s) 192, 463
AloI GAACNNNNNNTCC 2 cut(s) 713, 745
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 1010
Alw26I GTCTC 5 cut(s) 226, 296, 462, 941, 1219
AlwI GGATC 2 cut(s) 729, 845
Ama87I CYCGRG 1 cut(s) 1009
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 4 cut(s) 179, 596, 812, 1131
ApoI RAATTY 3 cut(s) 160, 1035, 1071
AspLEI GCGC 4 cut(s) 10, 575, 1052, 1083
AspS9I GGNCC 1 cut(s) 768
AsuC2I CCSGG 1 cut(s) 1099
AsuHPI GGTGA 2 cut(s) 55, 385
AvaI CYCGRG 1 cut(s) 1009
AvaII GGWCC 1 cut(s) 768
BalI TGGCCA 1 cut(s) 25
BanI GGYRCC 1 cut(s) 7
BarI GAAGNNNNNNTAC 2 cut(s) 493, 525
BauI CACGAG 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 1010
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 4 cut(s) 191, 583, 824, 1118
BccI CCATC 7 cut(s) 101, 501, 584, 644, 967, 1106, 1217
BceAI ACGGC 2 cut(s) 21, 224
BciT130I CCWGG 2 cut(s) 194, 465
BciVI GTATCC 1 cut(s) 882
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 1 cut(s) 1099
BcoDI GTCTC 5 cut(s) 226, 296, 462, 941, 1219
BfaI CTAG 3 cut(s) 48, 795, 1249
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 184
BfuI GTATCC 1 cut(s) 882
BglI GCCNNNNNGGC 1 cut(s) 538
BisI GCNGC 4 cut(s) 180, 597, 813, 1132
BlsI GCNGC 4 cut(s) 181, 598, 814, 1133
Bme1390I CCNGG 3 cut(s) 194, 465, 1099
Bme18I GGWCC 1 cut(s) 768
BmeT110I CYCGRG 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 768
BmiI GGNNCC 3 cut(s) 9, 35, 1183
BmrFI CCNGG 3 cut(s) 194, 465, 1099
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 501
BplI GAGNNNNNCTC 2 cut(s) 992, 1024
BpmI CTGGAG 1 cut(s) 1200
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 734
BpuMI CCSGG 1 cut(s) 1099
Bsa29I ATCGAT 2 cut(s) 276, 1110
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 4 cut(s) 193, 789, 1098, 1138
Bsc4I CCNNNNNNNGG 5 cut(s) 692, 718, 959, 1098, 1099
Bse3DI GCAATG 2 cut(s) 128, 189
BseBI CCWGG 2 cut(s) 194, 465
BseCI ATCGAT 2 cut(s) 276, 1110
BseDI CCNNGG 4 cut(s) 193, 789, 1098, 1138
BseGI GGATG 3 cut(s) 112, 1216, 1228
BseLI CCNNNNNNNGG 5 cut(s) 692, 718, 959, 1098, 1099
BseMI GCAATG 2 cut(s) 128, 189
BseMII CTCAG 4 cut(s) 209, 324, 876, 1230
BseRI GAGGAG 4 cut(s) 671, 1016, 1044, 1223
BseXI GCAGC 4 cut(s) 191, 583, 824, 1118
BsgI GTGCAG 1 cut(s) 542
Bsh1236I CGCG 3 cut(s) 1050, 1081, 1140
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 7
BshVI ATCGAT 2 cut(s) 276, 1110
BsiHKAI GWGCWC 1 cut(s) 1010
BsiHKCI CYCGRG 1 cut(s) 1009
BsiSI CCGG 1 cut(s) 1098
BsiWI CGTACG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 1242
BslI CCNNNNNNNGG 5 cut(s) 692, 718, 959, 1098, 1099
BsmAI GTCTC 5 cut(s) 226, 296, 462, 941, 1219
BsmFI GGGAC 1 cut(s) 1242
BsmI GAATGC 1 cut(s) 768
BsnI GGCC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 1009
Bsp1286I GDGCHC 1 cut(s) 1010
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 4 cut(s) 67, 375, 721, 837
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 4 cut(s) 210, 325, 877, 1229
BspDI ATCGAT 2 cut(s) 276, 1110
BspFNI CGCG 3 cut(s) 1050, 1081, 1140
BspLI GGNNCC 3 cut(s) 9, 35, 1183
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 2 cut(s) 729, 845
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 2 cut(s) 128, 189
BsrGI TGTACA 1 cut(s) 147
BssECI CCNNGG 4 cut(s) 193, 789, 1098, 1138
BssMI GATC 4 cut(s) 67, 375, 721, 837
BssNAI GTATAC 1 cut(s) 266
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 19
Bst2UI CCWGG 2 cut(s) 194, 465
Bst4CI ACNGT 2 cut(s) 307, 520
Bst6I CTCTTC 2 cut(s) 465, 987
BstACI GRCGYC 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 543, 1129
BstDEI CTNAG 4 cut(s) 218, 333, 885, 1216
BstDSI CCRYGG 1 cut(s) 1138
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 3 cut(s) 112, 1216, 1228
BstFNI CGCG 3 cut(s) 1050, 1081, 1140
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 4 cut(s) 10, 575, 1052, 1083
BstKTI GATC 4 cut(s) 70, 378, 724, 840
BstMAI GTCTC 5 cut(s) 226, 296, 462, 941, 1219
BstMBI GATC 4 cut(s) 67, 375, 721, 837
BstMWI GCNNNNNNNGC 5 cut(s) 529, 538, 572, 1056, 1137
BstNI CCWGG 2 cut(s) 194, 465
BstNSI RCATGY 1 cut(s) 709
BstSCI CCNGG 3 cut(s) 192, 463, 1097
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 3 cut(s) 1050, 1081, 1140
BstV1I GCAGC 4 cut(s) 191, 583, 824, 1118
BstV2I GAAGAC 1 cut(s) 501
BstZ17I GTATAC 1 cut(s) 266
Bsu15I ATCGAT 2 cut(s) 276, 1110
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 1 cut(s) 25
BsuTUI ATCGAT 2 cut(s) 276, 1110
BtgI CCRYGG 1 cut(s) 1138
BtsCI GGATG 3 cut(s) 112, 1216, 1228
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 543, 1129
CfoI GCGC 4 cut(s) 10, 575, 1052, 1083
Cfr13I GGNCC 1 cut(s) 768
Cfr42I CCGCGG 1 cut(s) 1141
ClaI ATCGAT 2 cut(s) 276, 1110
Csp6I GTAC 3 cut(s) 148, 328, 633
CviAII CATG 3 cut(s) 30, 706, 733
CviJI RGCY 8 cut(s) 25, 145, 211, 253, 322, 541, 794, 1184
CviKI_1 RGCY 8 cut(s) 25, 145, 211, 253, 322, 541, 794, 1184
CviQI GTAC 3 cut(s) 148, 328, 633
DdeI CTNAG 4 cut(s) 218, 333, 885, 1216
DinI GGCGCC 1 cut(s) 9
DpnI GATC 4 cut(s) 69, 377, 723, 839
DpnII GATC 4 cut(s) 67, 375, 721, 837
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 2 cut(s) 465, 987
EarI CTCTTC 2 cut(s) 465, 987
Eco47I GGWCC 1 cut(s) 768
Eco88I CYCGRG 1 cut(s) 1009
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 1035
EcoRII CCWGG 2 cut(s) 192, 463
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
FaeI CATG 3 cut(s) 33, 709, 736
FaqI GGGAC 1 cut(s) 1242
FatI CATG 3 cut(s) 29, 705, 732
FauI CCCGC 8 cut(s) 582, 842, 1050, 1055, 1070, 1086, 1132, 1145
FauNDI CATATG 2 cut(s) 447, 726
FbaI TGATCA 1 cut(s) 375
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 4 cut(s) 180, 597, 813, 1132
FokI GGATG 3 cut(s) 119, 1223, 1235
Fsp4HI GCNGC 4 cut(s) 180, 597, 813, 1132
FspBI CTAG 3 cut(s) 48, 795, 1249
GlaI GCGC 4 cut(s) 9, 574, 1051, 1082
GluI GCNGC 4 cut(s) 180, 597, 813, 1132
GsuI CTGGAG 1 cut(s) 1200
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 1 cut(s) 25
HapII CCGG 1 cut(s) 1098
HhaI GCGC 4 cut(s) 10, 575, 1052, 1083
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 3 cut(s) 33, 709, 736
Hin6I GCGC 4 cut(s) 8, 573, 1050, 1081
HinP1I GCGC 4 cut(s) 8, 573, 1050, 1081
HinfI GANTC 4 cut(s) 187, 1119, 1196, 1230
HpaII CCGG 1 cut(s) 1098
HphI GGTGA 2 cut(s) 55, 385
Hpy166II GTNNAC 2 cut(s) 173, 266
Hpy188I TCNGA 6 cut(s) 106, 219, 498, 752, 886, 1201
Hpy188III TCNNGA 5 cut(s) 71, 425, 479, 656, 1011
Hpy8I GTNNAC 2 cut(s) 173, 266
HpyCH4III ACNGT 2 cut(s) 307, 520
HpyCH4IV ACGT 1 cut(s) 891
HpyF10VI GCNNNNNNNGC 5 cut(s) 529, 538, 572, 1056, 1137
HpyF3I CTNAG 4 cut(s) 218, 333, 885, 1216
HpySE526I ACGT 1 cut(s) 891
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 3 cut(s) 33, 709, 736
HspAI GCGC 4 cut(s) 8, 573, 1050, 1081
KasI GGCGCC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 375
KspI CCGCGG 1 cut(s) 1141
Kzo9I GATC 4 cut(s) 67, 375, 721, 837
LmnI GCTCC 3 cut(s) 684, 1057, 1181
Lsp1109I GCAGC 4 cut(s) 191, 583, 824, 1118
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 48, 795, 1249
MaeII ACGT 1 cut(s) 891
MaeIII GTNAC 5 cut(s) 50, 80, 440, 514, 525
MalI GATC 4 cut(s) 69, 377, 723, 839
MboI GATC 4 cut(s) 67, 375, 721, 837
MboII GAAGA 6 cut(s) 117, 452, 501, 836, 982, 1004
MfeI CAATTG 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 1010
MlsI TGGCCA 1 cut(s) 25
MluNI TGGCCA 1 cut(s) 25
Mly113I GGCGCC 1 cut(s) 8
MlyI GAGTC 2 cut(s) 1205, 1224
MmeI TCCRAC 1 cut(s) 699
Mox20I TGGCCA 1 cut(s) 25
MscI TGGCCA 1 cut(s) 25
MseI TTAA 5 cut(s) 77, 140, 203, 357, 638
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 2 cut(s) 815, 1140
MspI CCGG 1 cut(s) 1098
MspR9I CCNGG 3 cut(s) 194, 465, 1099
MunI CAATTG 1 cut(s) 535
Mva1269I GAATGC 1 cut(s) 768
MvaI CCWGG 2 cut(s) 194, 465
MvnI CGCG 3 cut(s) 1050, 1081, 1140
MwoI GCNNNNNNNGC 5 cut(s) 529, 538, 572, 1056, 1137
NarI GGCGCC 1 cut(s) 8
NciI CCSGG 1 cut(s) 1099
NdeI CATATG 2 cut(s) 447, 726
NdeII GATC 4 cut(s) 67, 375, 721, 837
NlaIII CATG 3 cut(s) 33, 709, 736
NlaIV GGNNCC 3 cut(s) 9, 35, 1183
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 709
PctI GAATGC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 187, 1119
Pfl23II CGTACG 1 cut(s) 327
PflFI GACNNNGTC 1 cut(s) 454
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 4 cut(s) 181, 598, 814, 1133
PleI GAGTC 2 cut(s) 1204, 1224
PluTI GGCGCC 1 cut(s) 11
PpsI GAGTC 2 cut(s) 1204, 1224
Psp6I CCWGG 2 cut(s) 192, 463
PspGI CCWGG 2 cut(s) 192, 463
PspLI CGTACG 1 cut(s) 327
PspN4I GGNNCC 3 cut(s) 9, 35, 1183
PspPI GGNCC 1 cut(s) 768
PstI CTGCAG 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 454
RsaI GTAC 3 cut(s) 149, 329, 634
RsaNI GTAC 3 cut(s) 148, 328, 633
SacII CCGCGG 1 cut(s) 1141
SaqAI TTAA 5 cut(s) 77, 140, 203, 357, 638
SatI GCNGC 4 cut(s) 180, 597, 813, 1132
Sau3AI GATC 4 cut(s) 67, 375, 721, 837
Sau96I GGNCC 1 cut(s) 768
SchI GAGTC 2 cut(s) 1205, 1224
ScrFI CCNGG 3 cut(s) 194, 465, 1099
SduI GDGCHC 1 cut(s) 1010
SetI ASST 7 cut(s) 178, 226, 255, 638, 697, 894, 987
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 177
SfoI GGCGCC 1 cut(s) 9
Sfr303I CCGCGG 1 cut(s) 1141
SgrBI CCGCGG 1 cut(s) 1141
SinI GGWCC 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 713
SmoI CTYRAG 1 cut(s) 713
SspDI GGCGCC 1 cut(s) 7
SspMI CTAG 3 cut(s) 48, 795, 1249
StyD4I CCNGG 3 cut(s) 192, 463, 1097
TaaI ACNGT 2 cut(s) 307, 520
TaiI ACGT 1 cut(s) 894
TaqI TCGA 4 cut(s) 260, 276, 691, 1110
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 2 cut(s) 187, 1119
Tru1I TTAA 5 cut(s) 77, 140, 203, 357, 638
Tru9I TTAA 5 cut(s) 77, 140, 203, 357, 638
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 4 cut(s) 179, 596, 812, 1131
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 7 cut(s) 117, 200, 246, 447, 662, 721, 837
TspGWI ACGGA 2 cut(s) 315, 502
Tth111I GACNNNGTC 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 768
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 3 cut(s) 160, 1035, 1071
XceI RCATGY 1 cut(s) 709
XmiI GTMKAC 1 cut(s) 265
XspI CTAG 3 cut(s) 48, 795, 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.